Wall clock time and date at job start Mon Mar 30 2020 01:29:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 110.56209 * 2 1 4 4 C 1.54472 * 110.51483 * 237.31974 * 2 1 3 5 5 O 1.44427 * 104.80102 * 265.33372 * 4 2 1 6 6 C 1.44420 * 105.27787 * 319.48649 * 5 4 2 7 7 C 1.54482 * 104.80370 * 40.51021 * 6 5 4 8 8 H 1.09005 * 110.62616 * 94.72190 * 7 6 5 9 9 N 1.46496 * 110.51598 * 217.37960 * 7 6 5 10 10 S 1.65601 * 120.00005 * 259.64430 * 9 7 6 11 11 O 1.42099 * 104.27614 * 308.92528 * 10 9 7 12 12 O 1.42098 * 104.27658 * 181.06900 * 10 9 7 13 13 C 1.81402 * 104.45063 * 64.99501 * 10 9 7 14 14 C 1.52992 * 109.47209 * 179.97438 * 13 10 9 15 15 C 1.53004 * 109.47319 * 180.02562 * 14 13 10 16 16 C 1.50700 * 109.47208 * 180.02562 * 15 14 13 17 17 H 1.08002 * 119.99770 * 0.02562 * 16 15 14 18 18 C 1.37871 * 120.00083 * 180.02562 * 16 15 14 19 19 N 1.31514 * 120.00147 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 120.00278 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47228 * 179.97438 * 20 18 16 22 22 H 1.48501 * 109.46793 * 300.00001 * 20 18 16 23 23 H 1.48500 * 109.47000 * 60.00094 * 20 18 16 24 24 H 1.09004 * 109.47306 * 297.32497 * 1 2 3 25 25 H 1.08997 * 109.47125 * 57.32837 * 1 2 3 26 26 H 1.09001 * 109.47017 * 177.32528 * 1 2 3 27 27 H 1.09002 * 110.37442 * 24.16080 * 4 2 1 28 28 H 1.08993 * 110.37776 * 146.39335 * 4 2 1 29 29 H 1.09004 * 110.37419 * 281.68238 * 6 5 4 30 30 H 1.08999 * 110.37875 * 159.34375 * 6 5 4 31 31 H 0.97001 * 120.00162 * 79.63635 * 9 7 6 32 32 H 1.09009 * 109.46681 * 59.99982 * 13 10 9 33 33 H 1.08998 * 109.47443 * 300.00153 * 13 10 9 34 34 H 1.09000 * 109.47364 * 60.00146 * 14 13 10 35 35 H 1.08998 * 109.47610 * 300.00208 * 14 13 10 36 36 H 1.08994 * 109.47074 * 60.00408 * 15 14 13 37 37 H 1.08998 * 109.47285 * 300.00244 * 15 14 13 38 38 H 0.97005 * 119.99661 * 359.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9129 1.0206 0.0000 4 6 2.0714 -0.7812 -1.2177 5 8 2.3071 -2.1177 -0.7236 6 6 2.8757 -1.9421 0.5922 7 6 2.0714 -0.7812 1.2182 8 1 1.2490 -1.1655 1.8217 9 7 2.9457 0.0713 2.0275 10 16 2.9687 -0.0936 3.6751 11 8 1.6000 -0.0347 4.0524 12 8 3.8925 0.8933 4.1132 13 6 3.6349 -1.7576 3.9542 14 6 3.7070 -2.0326 5.4575 15 6 4.2695 -3.4359 5.6929 16 6 4.3400 -3.7070 7.1736 17 1 4.0156 -2.9538 7.8765 18 6 4.8185 -4.9163 7.6311 19 7 5.2140 -5.8333 6.7752 20 14 4.9052 -5.2527 9.4665 21 1 5.4512 -6.6146 9.6950 22 1 5.7895 -4.2495 10.1123 23 1 3.5432 -5.1614 10.0514 24 1 -0.3634 0.4717 0.9130 25 1 -0.3633 0.5547 -0.8650 26 1 -0.3633 -1.0266 -0.0480 27 1 1.3312 -0.7975 -2.0177 28 1 3.0013 -0.3361 -1.5713 29 1 3.9302 -1.6762 0.5176 30 1 2.7535 -2.8501 1.1828 31 1 3.5111 0.7324 1.5983 32 1 4.6343 -1.8257 3.5243 33 1 2.9849 -2.4934 3.4807 34 1 2.7079 -1.9644 5.8877 35 1 4.3573 -1.2969 5.9307 36 1 5.2687 -3.5037 5.2629 37 1 3.6196 -4.1720 5.2197 38 1 5.1686 -5.6588 5.8221 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000921496781.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:04 Heat of formation + Delta-G solvation = -142.240793 kcal Electronic energy + Delta-G solvation = -20089.480256 eV Core-core repulsion = 16865.304748 eV Total energy + Delta-G solvation = -3224.175508 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.07721 -37.03665 -35.91429 -35.23178 -34.97415 -32.81124 -32.32235 -28.60056 -27.51457 -26.60313 -23.54979 -22.86046 -21.19556 -20.87678 -19.43321 -17.77778 -17.30412 -16.90740 -16.17395 -15.95176 -15.74263 -15.41942 -14.95528 -14.36043 -13.87393 -13.76299 -13.37459 -13.06792 -12.87735 -12.61129 -12.33806 -12.11769 -12.09827 -11.97634 -11.94540 -11.54692 -11.50932 -11.25570 -11.19531 -10.83595 -10.82296 -10.24436 -10.14638 -10.13117 -9.88200 -9.52647 -8.61088 -8.38709 -6.42441 -4.12594 0.29566 2.63414 3.42854 3.44466 3.63144 3.63677 3.78276 4.00000 4.26477 4.38426 4.49800 4.50608 4.66488 4.83631 4.86448 5.00459 5.07836 5.13970 5.28629 5.35232 5.35497 5.42801 5.53637 5.60140 5.71837 5.75796 5.91261 6.10011 6.25943 6.40098 6.67136 6.73096 7.23429 7.35459 8.10951 8.39238 8.81100 9.59714 10.98266 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.026859 B = 0.003984 C = 0.003671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.247610 B = 7026.468342 C = 7626.380333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.129 4.129 3 H 0.093 0.907 4 C 0.046 3.954 5 O -0.367 6.367 6 C 0.022 3.978 7 C 0.116 3.884 8 H 0.112 0.888 9 N -1.114 6.114 10 S 2.600 3.400 11 O -0.958 6.958 12 O -0.960 6.960 13 C -0.613 4.613 14 C -0.098 4.098 15 C 0.017 3.983 16 C -0.608 4.608 17 H 0.052 0.948 18 C 0.016 3.984 19 N -0.911 5.911 20 Si 1.069 2.931 21 H -0.282 1.282 22 H -0.287 1.287 23 H -0.287 1.287 24 H 0.065 0.935 25 H 0.060 0.940 26 H 0.064 0.936 27 H 0.095 0.905 28 H 0.061 0.939 29 H 0.072 0.928 30 H 0.102 0.898 31 H 0.416 0.584 32 H 0.130 0.870 33 H 0.126 0.874 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.012 0.988 37 H 0.012 0.988 38 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.421 11.702 -16.635 21.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.150 4.150 3 H 0.111 0.889 4 C -0.031 4.031 5 O -0.285 6.285 6 C -0.057 4.057 7 C 0.007 3.993 8 H 0.130 0.870 9 N -0.871 5.871 10 S 2.695 3.305 11 O -0.948 6.948 12 O -0.950 6.950 13 C -0.745 4.745 14 C -0.137 4.137 15 C -0.021 4.021 16 C -0.646 4.646 17 H 0.070 0.930 18 C -0.188 4.188 19 N -0.547 5.547 20 Si 0.897 3.103 21 H -0.207 1.207 22 H -0.213 1.213 23 H -0.213 1.213 24 H 0.084 0.916 25 H 0.079 0.921 26 H 0.083 0.917 27 H 0.113 0.887 28 H 0.080 0.920 29 H 0.090 0.910 30 H 0.120 0.880 31 H 0.250 0.750 32 H 0.148 0.852 33 H 0.144 0.856 34 H 0.087 0.913 35 H 0.086 0.914 36 H 0.030 0.970 37 H 0.030 0.970 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -6.453 10.907 -14.933 19.586 hybrid contribution 0.184 1.063 -1.577 1.911 sum -6.270 11.970 -16.510 21.335 Atomic orbital electron populations 1.21845 0.93146 1.02803 1.02570 1.22787 0.97794 1.00381 0.94004 0.88858 1.23528 1.00252 0.82984 0.96305 1.89177 1.83073 1.25700 1.30547 1.24130 0.97757 0.99250 0.84550 1.22351 0.92710 0.90420 0.93782 0.87030 1.55808 1.55291 1.49270 1.26763 1.05360 0.75028 0.77733 0.72349 1.93580 1.33439 1.86856 1.80949 1.93590 1.65525 1.56578 1.79322 1.30634 1.13021 1.22003 1.08816 1.21359 1.02416 1.02924 0.87047 1.19186 0.95386 0.89628 0.97898 1.22062 1.47503 1.03549 0.91526 0.93003 1.25884 0.93354 0.92591 1.06938 1.70803 1.44361 1.35643 1.03890 0.83536 0.76586 0.76247 0.73909 1.20713 1.21326 1.21320 0.91637 0.92065 0.91722 0.88668 0.92036 0.90996 0.87993 0.74995 0.85194 0.85586 0.91347 0.91359 0.97002 0.96999 0.92162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 8.94 37.16 0.33 -0.76 16 2 C -0.13 -1.00 3.48 -89.05 -0.31 -1.31 16 3 H 0.09 0.62 7.83 -51.93 -0.41 0.21 16 4 C 0.05 0.35 7.18 37.93 0.27 0.62 16 5 O -0.37 -3.86 11.65 -35.23 -0.41 -4.27 16 6 C 0.02 0.21 7.35 37.94 0.28 0.49 16 7 C 0.12 1.09 3.33 -66.36 -0.22 0.87 16 8 H 0.11 1.12 7.14 -51.93 -0.37 0.75 16 9 N -1.11 -10.91 5.35 -3.55 -0.02 -10.93 16 10 S 2.60 36.15 5.44 -107.50 -0.58 35.56 16 11 O -0.96 -16.16 17.44 -57.54 -1.00 -17.16 16 12 O -0.96 -16.21 18.08 -57.54 -1.04 -17.25 16 13 C -0.61 -8.95 6.07 37.15 0.23 -8.73 16 14 C -0.10 -1.96 5.16 -26.73 -0.14 -2.10 16 15 C 0.02 0.43 4.28 -27.88 -0.12 0.31 16 16 C -0.61 -17.26 9.11 -34.44 -0.31 -17.58 16 17 H 0.05 1.44 7.74 -52.49 -0.41 1.04 16 18 C 0.02 0.47 5.46 -17.82 -0.10 0.37 16 19 N -0.91 -27.65 13.65 55.43 0.76 -26.89 16 20 Si 1.07 25.21 29.90 -169.99 -5.08 20.12 16 21 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 22 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 23 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 24 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.10 0.59 7.87 -51.93 -0.41 0.19 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.07 0.61 8.06 -51.93 -0.42 0.19 16 30 H 0.10 0.93 7.90 -51.93 -0.41 0.52 16 31 H 0.42 3.19 8.68 -34.47 -0.30 2.89 16 32 H 0.13 1.66 8.14 -51.92 -0.42 1.24 16 33 H 0.13 1.60 7.90 -51.93 -0.41 1.19 16 34 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 35 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 36 H 0.01 0.30 8.01 -51.93 -0.42 -0.12 16 37 H 0.01 0.30 8.01 -51.93 -0.42 -0.12 16 38 H 0.27 8.03 7.22 -40.82 -0.29 7.73 16 LS Contribution 326.57 15.07 4.92 4.92 Total: -1.00 -35.80 326.57 -8.57 -44.36 By element: Atomic # 1 Polarization: 5.35 SS G_CDS: -6.01 Total: -0.66 kcal Atomic # 6 Polarization: -27.72 SS G_CDS: -0.09 Total: -27.81 kcal Atomic # 7 Polarization: -38.56 SS G_CDS: 0.74 Total: -37.82 kcal Atomic # 8 Polarization: -36.23 SS G_CDS: -2.45 Total: -38.68 kcal Atomic # 14 Polarization: 25.21 SS G_CDS: -5.08 Total: 20.12 kcal Atomic # 16 Polarization: 36.15 SS G_CDS: -0.58 Total: 35.56 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -35.80 -8.57 -44.36 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000921496781.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.879 kcal (2) G-P(sol) polarization free energy of solvation -35.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds