Wall clock time and date at job start Mon Mar 30 2020 01:29:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 110.56209 * 2 1 4 4 C 1.54472 * 110.51483 * 237.31974 * 2 1 3 5 5 O 1.44427 * 104.80102 * 265.33372 * 4 2 1 6 6 C 1.44420 * 105.27787 * 319.48649 * 5 4 2 7 7 C 1.54482 * 104.80370 * 40.51021 * 6 5 4 8 8 H 1.09005 * 110.62616 * 94.72190 * 7 6 5 9 9 N 1.46496 * 110.51598 * 217.37960 * 7 6 5 10 10 S 1.65601 * 120.00005 * 259.64430 * 9 7 6 11 11 O 1.42099 * 104.27614 * 308.92528 * 10 9 7 12 12 O 1.42098 * 104.27658 * 181.06900 * 10 9 7 13 13 C 1.81402 * 104.45063 * 64.99501 * 10 9 7 14 14 C 1.52992 * 109.47209 * 179.97438 * 13 10 9 15 15 C 1.53004 * 109.47319 * 180.02562 * 14 13 10 16 16 C 1.50700 * 109.47208 * 180.02562 * 15 14 13 17 17 H 1.08002 * 119.99770 * 0.02562 * 16 15 14 18 18 C 1.37871 * 120.00083 * 180.02562 * 16 15 14 19 19 N 1.31514 * 120.00147 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 120.00278 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47228 * 179.97438 * 20 18 16 22 22 H 1.48501 * 109.46793 * 300.00001 * 20 18 16 23 23 H 1.48500 * 109.47000 * 60.00094 * 20 18 16 24 24 H 1.09004 * 109.47306 * 297.32497 * 1 2 3 25 25 H 1.08997 * 109.47125 * 57.32837 * 1 2 3 26 26 H 1.09001 * 109.47017 * 177.32528 * 1 2 3 27 27 H 1.09002 * 110.37442 * 24.16080 * 4 2 1 28 28 H 1.08993 * 110.37776 * 146.39335 * 4 2 1 29 29 H 1.09004 * 110.37419 * 281.68238 * 6 5 4 30 30 H 1.08999 * 110.37875 * 159.34375 * 6 5 4 31 31 H 0.97001 * 120.00162 * 79.63635 * 9 7 6 32 32 H 1.09009 * 109.46681 * 59.99982 * 13 10 9 33 33 H 1.08998 * 109.47443 * 300.00153 * 13 10 9 34 34 H 1.09000 * 109.47364 * 60.00146 * 14 13 10 35 35 H 1.08998 * 109.47610 * 300.00208 * 14 13 10 36 36 H 1.08994 * 109.47074 * 60.00408 * 15 14 13 37 37 H 1.08998 * 109.47285 * 300.00244 * 15 14 13 38 38 H 0.97005 * 119.99661 * 359.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9129 1.0206 0.0000 4 6 2.0714 -0.7812 -1.2177 5 8 2.3071 -2.1177 -0.7236 6 6 2.8757 -1.9421 0.5922 7 6 2.0714 -0.7812 1.2182 8 1 1.2490 -1.1655 1.8217 9 7 2.9457 0.0713 2.0275 10 16 2.9687 -0.0936 3.6751 11 8 1.6000 -0.0347 4.0524 12 8 3.8925 0.8933 4.1132 13 6 3.6349 -1.7576 3.9542 14 6 3.7070 -2.0326 5.4575 15 6 4.2695 -3.4359 5.6929 16 6 4.3400 -3.7070 7.1736 17 1 4.0156 -2.9538 7.8765 18 6 4.8185 -4.9163 7.6311 19 7 5.2140 -5.8333 6.7752 20 14 4.9052 -5.2527 9.4665 21 1 5.4512 -6.6146 9.6950 22 1 5.7895 -4.2495 10.1123 23 1 3.5432 -5.1614 10.0514 24 1 -0.3634 0.4717 0.9130 25 1 -0.3633 0.5547 -0.8650 26 1 -0.3633 -1.0266 -0.0480 27 1 1.3312 -0.7975 -2.0177 28 1 3.0013 -0.3361 -1.5713 29 1 3.9302 -1.6762 0.5176 30 1 2.7535 -2.8501 1.1828 31 1 3.5111 0.7324 1.5983 32 1 4.6343 -1.8257 3.5243 33 1 2.9849 -2.4934 3.4807 34 1 2.7079 -1.9644 5.8877 35 1 4.3573 -1.2969 5.9307 36 1 5.2687 -3.5037 5.2629 37 1 3.6196 -4.1720 5.2197 38 1 5.1686 -5.6588 5.8221 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000921496781.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:03 Heat of formation + Delta-G solvation = -169.884932 kcal Electronic energy + Delta-G solvation = -20090.678996 eV Core-core repulsion = 16865.304748 eV Total energy + Delta-G solvation = -3225.374248 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.76859 -38.28932 -37.17352 -36.79244 -36.04783 -34.25852 -33.47847 -29.47841 -29.18898 -27.20172 -25.49128 -23.65276 -22.74819 -21.68673 -20.52516 -19.17846 -18.65783 -18.07851 -17.26462 -16.90098 -16.84908 -16.16185 -15.95760 -15.66736 -15.57017 -15.31039 -14.53309 -13.95979 -13.94252 -13.68413 -13.53937 -13.32942 -13.30846 -13.23640 -13.11673 -13.06919 -12.61029 -12.53557 -12.34461 -11.95346 -11.91449 -11.87973 -11.79132 -11.52474 -10.91493 -10.70483 -10.56446 -10.37989 -8.71351 -6.42562 -0.86469 1.52711 1.60463 1.62026 1.80104 2.54571 2.63979 2.94636 3.13259 3.15401 3.35340 3.60098 3.71644 3.78699 3.86413 4.03453 4.20080 4.21232 4.25226 4.49023 4.51390 4.69996 4.76730 4.80077 4.80357 4.86937 4.90839 5.00110 5.11843 5.25726 5.32821 5.36726 5.75284 5.94866 6.01671 6.15663 6.55147 7.38462 8.70197 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.026859 B = 0.003984 C = 0.003671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.247610 B = 7026.468342 C = 7626.380333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.126 4.126 3 H 0.109 0.891 4 C 0.044 3.956 5 O -0.390 6.390 6 C 0.018 3.982 7 C 0.108 3.892 8 H 0.104 0.896 9 N -1.095 6.095 10 S 2.631 3.369 11 O -0.987 6.987 12 O -0.988 6.988 13 C -0.614 4.614 14 C -0.099 4.099 15 C 0.014 3.986 16 C -0.630 4.630 17 H 0.051 0.949 18 C -0.036 4.036 19 N -0.935 5.935 20 Si 1.115 2.885 21 H -0.282 1.282 22 H -0.269 1.269 23 H -0.269 1.269 24 H 0.054 0.946 25 H 0.079 0.921 26 H 0.057 0.943 27 H 0.108 0.892 28 H 0.076 0.924 29 H 0.084 0.916 30 H 0.099 0.901 31 H 0.429 0.571 32 H 0.150 0.850 33 H 0.145 0.855 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.001 0.999 37 H 0.001 0.999 38 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.602 12.726 -17.413 22.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.146 4.146 3 H 0.127 0.873 4 C -0.033 4.033 5 O -0.308 6.308 6 C -0.060 4.060 7 C 0.000 4.000 8 H 0.122 0.878 9 N -0.856 5.856 10 S 2.725 3.275 11 O -0.977 6.977 12 O -0.978 6.978 13 C -0.745 4.745 14 C -0.139 4.139 15 C -0.024 4.024 16 C -0.668 4.668 17 H 0.070 0.930 18 C -0.234 4.234 19 N -0.573 5.573 20 Si 0.936 3.064 21 H -0.207 1.207 22 H -0.194 1.194 23 H -0.194 1.194 24 H 0.073 0.927 25 H 0.098 0.902 26 H 0.077 0.923 27 H 0.126 0.874 28 H 0.094 0.906 29 H 0.102 0.898 30 H 0.118 0.882 31 H 0.267 0.733 32 H 0.168 0.832 33 H 0.163 0.837 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.019 0.981 37 H 0.019 0.981 38 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -6.631 11.955 -15.726 20.837 hybrid contribution 0.215 0.765 -1.440 1.645 sum -6.417 12.719 -17.166 22.307 Atomic orbital electron populations 1.21860 0.93080 1.02627 1.02894 1.22816 0.97830 1.00968 0.93033 0.87293 1.23712 1.01420 0.81747 0.96377 1.89157 1.83296 1.27498 1.30852 1.24185 0.98350 0.99101 0.84404 1.22497 0.92451 0.90793 0.94221 0.87802 1.55338 1.55577 1.49583 1.25108 1.04217 0.73714 0.76527 0.72996 1.93546 1.34970 1.86992 1.82153 1.93549 1.66174 1.57452 1.80624 1.30602 1.15049 1.23619 1.05223 1.21175 1.01821 0.99827 0.91032 1.19135 0.94825 0.92411 0.96029 1.22569 1.47034 1.03671 0.93510 0.93047 1.27396 0.92526 0.92626 1.10821 1.70926 1.46207 1.36493 1.03635 0.82961 0.77814 0.76461 0.69155 1.20722 1.19429 1.19449 0.92694 0.90217 0.92349 0.87375 0.90553 0.89806 0.88232 0.73290 0.83189 0.83730 0.91556 0.91544 0.98085 0.98096 0.93297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 8.94 71.98 0.64 -1.29 16 2 C -0.13 -1.64 3.48 -9.78 -0.03 -1.68 16 3 H 0.11 1.09 7.83 -2.39 -0.02 1.07 16 4 C 0.04 0.55 7.18 72.48 0.52 1.07 16 5 O -0.39 -7.52 11.65 -148.98 -1.74 -9.26 16 6 C 0.02 0.31 7.35 72.49 0.53 0.85 16 7 C 0.11 1.84 3.33 46.01 0.15 2.00 16 8 H 0.10 1.96 7.14 -2.38 -0.02 1.95 16 9 N -1.09 -19.16 5.35 -165.16 -0.88 -20.05 16 10 S 2.63 69.86 5.44 -56.49 -0.31 69.55 16 11 O -0.99 -32.44 17.44 -127.65 -2.23 -34.67 16 12 O -0.99 -32.16 18.08 -127.65 -2.31 -34.47 16 13 C -0.61 -17.29 6.07 71.98 0.44 -16.85 16 14 C -0.10 -3.96 5.16 30.59 0.16 -3.80 16 15 C 0.01 0.72 4.28 29.85 0.13 0.85 16 16 C -0.63 -36.06 9.11 25.60 0.23 -35.83 16 17 H 0.05 2.87 7.74 -2.91 -0.02 2.85 16 18 C -0.04 -2.08 5.46 84.65 0.46 -1.61 16 19 N -0.94 -57.47 13.65 21.45 0.29 -57.18 16 20 Si 1.12 50.24 29.90 68.60 2.05 52.29 16 21 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 22 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16 23 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 24 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 25 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 26 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 27 H 0.11 1.06 7.87 -2.39 -0.02 1.05 16 28 H 0.08 0.74 8.14 -2.39 -0.02 0.73 16 29 H 0.08 1.22 8.06 -2.39 -0.02 1.20 16 30 H 0.10 1.71 7.90 -2.39 -0.02 1.69 16 31 H 0.43 5.43 8.68 -96.74 -0.84 4.59 16 32 H 0.15 3.60 8.14 -2.39 -0.02 3.58 16 33 H 0.14 3.51 7.90 -2.39 -0.02 3.49 16 34 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 35 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 36 H 0.00 0.04 8.01 -2.39 -0.02 0.02 16 37 H 0.00 0.04 8.01 -2.39 -0.02 0.02 16 38 H 0.26 15.81 7.22 -92.70 -0.67 15.14 16 Total: -1.00 -76.63 326.57 -1.58 -78.21 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: 0.30 Total: 11.86 kcal Atomic # 6 Polarization: -59.53 SS G_CDS: 3.23 Total: -56.29 kcal Atomic # 7 Polarization: -76.64 SS G_CDS: -0.59 Total: -77.23 kcal Atomic # 8 Polarization: -72.12 SS G_CDS: -6.27 Total: -78.39 kcal Atomic # 14 Polarization: 50.24 SS G_CDS: 2.05 Total: 52.29 kcal Atomic # 16 Polarization: 69.86 SS G_CDS: -0.31 Total: 69.55 kcal Total: -76.63 -1.58 -78.21 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000921496781.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.678 kcal (2) G-P(sol) polarization free energy of solvation -76.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds