Wall clock time and date at job start Mon Mar 30 2020 01:29:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 110.82870 * 2 1 4 4 C 1.54999 * 110.90805 * 123.64593 * 2 1 3 5 5 O 1.44380 * 103.49012 * 155.22423 * 4 2 1 6 6 C 1.43740 * 106.97504 * 319.93440 * 5 4 2 7 7 C 1.54107 * 107.29341 * 26.51818 * 6 5 4 8 8 H 1.08998 * 110.48426 * 239.16125 * 7 6 5 9 9 N 1.46500 * 110.48841 * 116.64197 * 7 6 5 10 10 S 1.65603 * 119.99490 * 96.45640 * 9 7 6 11 11 O 1.42102 * 104.27965 * 308.92411 * 10 9 7 12 12 O 1.42104 * 104.27544 * 181.07037 * 10 9 7 13 13 C 1.81396 * 104.45253 * 64.99880 * 10 9 7 14 14 C 1.53001 * 109.47186 * 179.97438 * 13 10 9 15 15 C 1.53000 * 109.46886 * 179.97438 * 14 13 10 16 16 C 1.50703 * 109.46912 * 180.02562 * 15 14 13 17 17 H 1.07996 * 119.99751 * 0.02562 * 16 15 14 18 18 C 1.37877 * 120.00001 * 180.02562 * 16 15 14 19 19 N 1.31512 * 119.99923 * 180.02562 * 18 16 15 20 20 Si 1.86804 * 120.00006 * 359.97438 * 18 16 15 21 21 H 1.48497 * 109.47093 * 90.00088 * 20 18 16 22 22 H 1.48500 * 109.47049 * 210.00797 * 20 18 16 23 23 H 1.48504 * 109.47189 * 330.00185 * 20 18 16 24 24 H 1.09003 * 109.46878 * 183.65258 * 1 2 3 25 25 H 1.09001 * 109.46815 * 303.64735 * 1 2 3 26 26 H 1.08999 * 109.47001 * 63.64850 * 1 2 3 27 27 H 1.08994 * 110.61821 * 36.71780 * 4 2 1 28 28 H 1.09006 * 110.74885 * 273.78415 * 4 2 1 29 29 H 1.08996 * 109.88160 * 267.09529 * 6 5 4 30 30 H 1.09001 * 109.87879 * 145.93548 * 6 5 4 31 31 H 0.96997 * 120.00082 * 276.45502 * 9 7 6 32 32 H 1.09001 * 109.46704 * 59.99668 * 13 10 9 33 33 H 1.09002 * 109.47134 * 299.99954 * 13 10 9 34 34 H 1.09001 * 109.46652 * 60.00206 * 14 13 10 35 35 H 1.08992 * 109.47514 * 300.00295 * 14 13 10 36 36 H 1.09002 * 109.47398 * 300.00496 * 15 14 13 37 37 H 1.09001 * 109.47194 * 60.00677 * 15 14 13 38 38 H 0.97000 * 119.99684 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9176 1.0188 0.0000 4 6 2.0832 -0.8022 1.2054 5 8 3.3942 -1.2143 0.7626 6 6 3.2719 -1.5883 -0.6199 7 6 2.0825 -0.8013 -1.2039 8 1 1.3257 -1.4844 -1.5896 9 7 2.5374 0.1072 -2.2592 10 16 2.4407 -0.3537 -3.8469 11 8 3.0644 -1.6301 -3.8799 12 8 2.9839 0.7459 -4.5647 13 6 0.6617 -0.5061 -4.1666 14 6 0.4391 -0.9317 -5.6192 15 6 -1.0614 -1.0608 -5.8886 16 6 -1.2806 -1.4806 -7.3193 17 1 -0.4343 -1.6398 -7.9710 18 6 -2.5616 -1.6615 -7.7962 19 7 -2.7529 -2.0283 -9.0445 20 14 -4.0254 -1.3868 -6.6686 21 1 -4.4591 0.0307 -6.7569 22 1 -5.1426 -2.2731 -7.0830 23 1 -3.6382 -1.6998 -5.2695 24 1 -0.3633 -1.0256 0.0655 25 1 -0.3633 0.5694 0.8555 26 1 -0.3633 0.4562 -0.9209 27 1 1.4562 -1.6703 1.4089 28 1 2.1581 -0.1687 2.0892 29 1 3.0826 -2.6588 -0.6990 30 1 4.1855 -1.3307 -1.1557 31 1 2.8951 0.9787 -2.0281 32 1 0.1775 0.4547 -3.9915 33 1 0.2353 -1.2548 -3.4988 34 1 0.9234 -1.8923 -5.7946 35 1 0.8653 -0.1828 -6.2867 36 1 -1.4873 -1.8100 -5.2211 37 1 -1.5461 -0.1004 -5.7132 38 1 -3.6541 -2.1551 -9.3801 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000921496782.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:05 Heat of formation + Delta-G solvation = -134.409205 kcal Electronic energy + Delta-G solvation = -20123.823084 eV Core-core repulsion = 16899.987179 eV Total energy + Delta-G solvation = -3223.835905 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.03477 -37.01747 -35.89338 -35.28204 -34.87415 -32.89280 -32.25753 -28.58033 -28.44015 -26.56207 -23.68458 -22.81785 -21.24520 -20.54167 -19.31638 -17.56028 -17.34486 -16.95429 -16.40517 -15.91458 -15.78225 -15.48798 -14.78324 -14.30395 -14.22615 -13.76347 -13.55359 -13.06139 -12.95958 -12.55053 -12.41996 -12.22061 -12.03964 -11.99789 -11.93730 -11.66923 -11.57960 -11.32448 -11.25584 -11.02170 -10.98256 -10.26297 -10.13809 -9.91656 -9.78515 -9.42881 -9.29299 -8.62282 -6.11712 -4.11284 0.29522 2.65133 3.23275 3.30860 3.32315 3.57534 3.76467 4.01659 4.20556 4.36777 4.40092 4.50838 4.59141 4.77910 4.87553 4.97162 5.02035 5.10445 5.20366 5.22007 5.34684 5.40654 5.60327 5.64506 5.67371 5.73638 5.87937 6.08071 6.20162 6.49817 6.61264 6.73368 7.07413 7.21496 7.67200 8.44046 8.92679 9.49184 11.01605 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.023072 B = 0.004448 C = 0.003956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.300125 B = 6293.019771 C = 7076.199176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.131 4.131 3 H 0.095 0.905 4 C 0.049 3.951 5 O -0.376 6.376 6 C 0.032 3.968 7 C 0.121 3.879 8 H 0.102 0.898 9 N -1.114 6.114 10 S 2.599 3.401 11 O -0.956 6.956 12 O -0.958 6.958 13 C -0.616 4.616 14 C -0.098 4.098 15 C -0.004 4.004 16 C -0.528 4.528 17 H 0.075 0.925 18 C 0.068 3.932 19 N -0.900 5.900 20 Si 0.880 3.120 21 H -0.276 1.276 22 H -0.286 1.286 23 H -0.266 1.266 24 H 0.062 0.938 25 H 0.064 0.936 26 H 0.065 0.935 27 H 0.065 0.935 28 H 0.095 0.905 29 H 0.072 0.928 30 H 0.096 0.904 31 H 0.417 0.583 32 H 0.130 0.870 33 H 0.125 0.875 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.020 0.980 37 H 0.016 0.984 38 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.247 4.494 21.741 23.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.151 4.151 3 H 0.114 0.886 4 C -0.028 4.028 5 O -0.295 6.295 6 C -0.046 4.046 7 C 0.013 3.987 8 H 0.120 0.880 9 N -0.871 5.871 10 S 2.694 3.306 11 O -0.946 6.946 12 O -0.948 6.948 13 C -0.747 4.747 14 C -0.137 4.137 15 C -0.043 4.043 16 C -0.566 4.566 17 H 0.093 0.907 18 C -0.134 4.134 19 N -0.538 5.538 20 Si 0.708 3.292 21 H -0.202 1.202 22 H -0.212 1.212 23 H -0.191 1.191 24 H 0.081 0.919 25 H 0.083 0.917 26 H 0.085 0.915 27 H 0.084 0.916 28 H 0.113 0.887 29 H 0.090 0.910 30 H 0.114 0.886 31 H 0.252 0.748 32 H 0.148 0.852 33 H 0.144 0.856 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.038 0.962 37 H 0.034 0.966 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 8.000 4.116 21.114 22.951 hybrid contribution -1.658 0.566 0.649 1.868 sum 6.343 4.682 21.763 23.147 Atomic orbital electron populations 1.21791 0.93052 1.02788 1.02971 1.23050 0.97278 1.00687 0.94117 0.88628 1.23647 0.84503 0.97758 0.96915 1.88902 1.28842 1.86446 1.25298 1.23766 0.99606 0.98983 0.82252 1.22246 0.96105 0.91299 0.89062 0.87978 1.55864 1.79456 1.27957 1.23856 1.05404 0.78369 0.74435 0.72386 1.93593 1.73096 1.42805 1.85109 1.93598 1.77060 1.53750 1.70440 1.30612 1.24097 1.11050 1.08944 1.21319 1.02647 1.01616 0.88120 1.19528 0.89998 0.96688 0.98047 1.21129 0.94113 1.46646 0.94720 0.90714 1.25024 0.98938 0.94471 0.94936 1.69909 1.21944 1.47249 1.14702 0.86777 0.82469 0.78388 0.81610 1.20215 1.21236 1.19105 0.91856 0.91742 0.91546 0.91645 0.88684 0.90987 0.88557 0.74845 0.85185 0.85615 0.90894 0.90925 0.96203 0.96617 0.92589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.19 37.16 0.34 -0.55 16 2 C -0.13 -0.90 3.44 -88.61 -0.30 -1.20 16 3 H 0.10 0.60 7.83 -51.93 -0.41 0.20 16 4 C 0.05 0.35 7.17 38.21 0.27 0.62 16 5 O -0.38 -3.90 11.52 -35.23 -0.41 -4.30 16 6 C 0.03 0.32 7.50 37.74 0.28 0.61 16 7 C 0.12 1.06 3.05 -66.40 -0.20 0.86 16 8 H 0.10 0.79 6.96 -51.93 -0.36 0.43 16 9 N -1.11 -10.59 5.35 -3.59 -0.02 -10.61 16 10 S 2.60 34.70 5.40 -107.50 -0.58 34.11 16 11 O -0.96 -15.49 17.82 -57.54 -1.03 -16.52 16 12 O -0.96 -15.86 18.08 -57.54 -1.04 -16.90 16 13 C -0.62 -8.28 5.97 37.16 0.22 -8.06 16 14 C -0.10 -1.84 5.16 -26.73 -0.14 -1.97 16 15 C 0.00 -0.09 4.04 -27.88 -0.11 -0.20 16 16 C -0.53 -14.83 9.66 -34.44 -0.33 -15.16 16 17 H 0.07 2.26 7.99 -52.49 -0.42 1.84 16 18 C 0.07 1.95 5.47 -17.82 -0.10 1.86 16 19 N -0.90 -27.44 13.96 55.43 0.77 -26.66 16 20 Si 0.88 21.07 27.47 -169.99 -4.67 16.40 16 21 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 22 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 23 H -0.27 -6.01 6.54 56.52 0.37 -5.64 16 24 H 0.06 0.36 8.09 -51.93 -0.42 -0.06 16 25 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 26 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 27 H 0.07 0.41 8.01 -51.93 -0.42 -0.01 16 28 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.10 1.03 7.93 -51.93 -0.41 0.62 16 31 H 0.42 3.25 8.58 -34.48 -0.30 2.95 16 32 H 0.13 1.49 8.14 -51.92 -0.42 1.07 16 33 H 0.13 1.41 7.47 -51.92 -0.39 1.02 16 34 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 35 H 0.07 1.37 8.14 -51.93 -0.42 0.94 16 36 H 0.02 0.44 7.20 -51.93 -0.37 0.07 16 37 H 0.02 0.34 7.57 -51.93 -0.39 -0.05 16 38 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 323.94 15.07 4.88 4.88 Total: -1.00 -35.37 323.94 -8.16 -43.53 By element: Atomic # 1 Polarization: 5.28 SS G_CDS: -6.01 Total: -0.73 kcal Atomic # 6 Polarization: -23.14 SS G_CDS: -0.07 Total: -23.20 kcal Atomic # 7 Polarization: -38.03 SS G_CDS: 0.75 Total: -37.28 kcal Atomic # 8 Polarization: -35.25 SS G_CDS: -2.47 Total: -37.72 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -4.67 Total: 16.40 kcal Atomic # 16 Polarization: 34.70 SS G_CDS: -0.58 Total: 34.11 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -35.37 -8.16 -43.53 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000921496782.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.878 kcal (2) G-P(sol) polarization free energy of solvation -35.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds