Wall clock time and date at job start Mon Mar 30 2020 01:29:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 110.82870 * 2 1 4 4 C 1.54999 * 110.90805 * 123.64593 * 2 1 3 5 5 O 1.44380 * 103.49012 * 155.22423 * 4 2 1 6 6 C 1.43740 * 106.97504 * 319.93440 * 5 4 2 7 7 C 1.54107 * 107.29341 * 26.51818 * 6 5 4 8 8 H 1.08998 * 110.48426 * 239.16125 * 7 6 5 9 9 N 1.46500 * 110.48841 * 116.64197 * 7 6 5 10 10 S 1.65603 * 119.99490 * 96.45640 * 9 7 6 11 11 O 1.42102 * 104.27965 * 308.92411 * 10 9 7 12 12 O 1.42104 * 104.27544 * 181.07037 * 10 9 7 13 13 C 1.81396 * 104.45253 * 64.99880 * 10 9 7 14 14 C 1.53001 * 109.47186 * 179.97438 * 13 10 9 15 15 C 1.53000 * 109.46886 * 179.97438 * 14 13 10 16 16 C 1.50703 * 109.46912 * 180.02562 * 15 14 13 17 17 H 1.07996 * 119.99751 * 0.02562 * 16 15 14 18 18 C 1.37877 * 120.00001 * 180.02562 * 16 15 14 19 19 N 1.31512 * 119.99923 * 180.02562 * 18 16 15 20 20 Si 1.86804 * 120.00006 * 359.97438 * 18 16 15 21 21 H 1.48497 * 109.47093 * 90.00088 * 20 18 16 22 22 H 1.48500 * 109.47049 * 210.00797 * 20 18 16 23 23 H 1.48504 * 109.47189 * 330.00185 * 20 18 16 24 24 H 1.09003 * 109.46878 * 183.65258 * 1 2 3 25 25 H 1.09001 * 109.46815 * 303.64735 * 1 2 3 26 26 H 1.08999 * 109.47001 * 63.64850 * 1 2 3 27 27 H 1.08994 * 110.61821 * 36.71780 * 4 2 1 28 28 H 1.09006 * 110.74885 * 273.78415 * 4 2 1 29 29 H 1.08996 * 109.88160 * 267.09529 * 6 5 4 30 30 H 1.09001 * 109.87879 * 145.93548 * 6 5 4 31 31 H 0.96997 * 120.00082 * 276.45502 * 9 7 6 32 32 H 1.09001 * 109.46704 * 59.99668 * 13 10 9 33 33 H 1.09002 * 109.47134 * 299.99954 * 13 10 9 34 34 H 1.09001 * 109.46652 * 60.00206 * 14 13 10 35 35 H 1.08992 * 109.47514 * 300.00295 * 14 13 10 36 36 H 1.09002 * 109.47398 * 300.00496 * 15 14 13 37 37 H 1.09001 * 109.47194 * 60.00677 * 15 14 13 38 38 H 0.97000 * 119.99684 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9176 1.0188 0.0000 4 6 2.0832 -0.8022 1.2054 5 8 3.3942 -1.2143 0.7626 6 6 3.2719 -1.5883 -0.6199 7 6 2.0825 -0.8013 -1.2039 8 1 1.3257 -1.4844 -1.5896 9 7 2.5374 0.1072 -2.2592 10 16 2.4407 -0.3537 -3.8469 11 8 3.0644 -1.6301 -3.8799 12 8 2.9839 0.7459 -4.5647 13 6 0.6617 -0.5061 -4.1666 14 6 0.4391 -0.9317 -5.6192 15 6 -1.0614 -1.0608 -5.8886 16 6 -1.2806 -1.4806 -7.3193 17 1 -0.4343 -1.6398 -7.9710 18 6 -2.5616 -1.6615 -7.7962 19 7 -2.7529 -2.0283 -9.0445 20 14 -4.0254 -1.3868 -6.6686 21 1 -4.4591 0.0307 -6.7569 22 1 -5.1426 -2.2731 -7.0830 23 1 -3.6382 -1.6998 -5.2695 24 1 -0.3633 -1.0256 0.0655 25 1 -0.3633 0.5694 0.8555 26 1 -0.3633 0.4562 -0.9209 27 1 1.4562 -1.6703 1.4089 28 1 2.1581 -0.1687 2.0892 29 1 3.0826 -2.6588 -0.6990 30 1 4.1855 -1.3307 -1.1557 31 1 2.8951 0.9787 -2.0281 32 1 0.1775 0.4547 -3.9915 33 1 0.2353 -1.2548 -3.4988 34 1 0.9234 -1.8923 -5.7946 35 1 0.8653 -0.1828 -6.2867 36 1 -1.4873 -1.8100 -5.2211 37 1 -1.5461 -0.1004 -5.7132 38 1 -3.6541 -2.1551 -9.3801 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000921496782.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:05 Heat of formation + Delta-G solvation = -162.845949 kcal Electronic energy + Delta-G solvation = -20125.056194 eV Core-core repulsion = 16899.987179 eV Total energy + Delta-G solvation = -3225.069015 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.68531 -38.20547 -37.08097 -36.51163 -36.03283 -34.25291 -33.47820 -30.16896 -29.30351 -27.05010 -25.41297 -23.49410 -22.31121 -21.75585 -20.34790 -18.97088 -18.57221 -18.07430 -17.39961 -16.96266 -16.65298 -16.34311 -16.18999 -15.81872 -15.24637 -14.87443 -14.38471 -14.18182 -14.02091 -13.76351 -13.65155 -13.26144 -13.22770 -13.16982 -13.13771 -12.72061 -12.66137 -12.56427 -12.32259 -11.86269 -11.83362 -11.81312 -11.63609 -11.40625 -11.28447 -10.85140 -10.77208 -10.27865 -8.29500 -6.35741 -0.78764 1.37412 1.40211 1.51603 1.70724 2.36895 2.71453 2.97339 3.05902 3.19347 3.39017 3.67673 3.80638 3.87096 3.90618 4.04496 4.19724 4.32277 4.34131 4.54077 4.61078 4.75635 4.81169 4.83478 4.87468 4.95397 5.00883 5.07877 5.24555 5.34307 5.41917 5.46477 5.63021 5.86333 6.03901 6.25509 6.72930 7.29098 8.87621 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.023072 B = 0.004448 C = 0.003956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.300125 B = 6293.019771 C = 7076.199176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.122 4.122 3 H 0.102 0.898 4 C 0.043 3.957 5 O -0.398 6.398 6 C 0.027 3.973 7 C 0.113 3.887 8 H 0.117 0.883 9 N -1.098 6.098 10 S 2.619 3.381 11 O -0.988 6.988 12 O -0.994 6.994 13 C -0.608 4.608 14 C -0.104 4.104 15 C -0.005 4.005 16 C -0.545 4.545 17 H 0.028 0.972 18 C 0.000 4.000 19 N -0.954 5.954 20 Si 0.956 3.044 21 H -0.265 1.265 22 H -0.287 1.287 23 H -0.235 1.235 24 H 0.067 0.933 25 H 0.075 0.925 26 H 0.066 0.934 27 H 0.076 0.924 28 H 0.110 0.890 29 H 0.073 0.927 30 H 0.081 0.919 31 H 0.427 0.573 32 H 0.159 0.841 33 H 0.157 0.843 34 H 0.063 0.937 35 H 0.061 0.939 36 H 0.035 0.965 37 H 0.032 0.968 38 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.635 5.415 25.037 26.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.142 4.142 3 H 0.120 0.880 4 C -0.034 4.034 5 O -0.317 6.317 6 C -0.052 4.052 7 C 0.005 3.995 8 H 0.135 0.865 9 N -0.858 5.858 10 S 2.715 3.285 11 O -0.978 6.978 12 O -0.984 6.984 13 C -0.739 4.739 14 C -0.144 4.144 15 C -0.043 4.043 16 C -0.583 4.583 17 H 0.046 0.954 18 C -0.196 4.196 19 N -0.594 5.594 20 Si 0.778 3.222 21 H -0.190 1.190 22 H -0.213 1.213 23 H -0.158 1.158 24 H 0.086 0.914 25 H 0.094 0.906 26 H 0.085 0.915 27 H 0.094 0.906 28 H 0.128 0.872 29 H 0.092 0.908 30 H 0.100 0.900 31 H 0.264 0.736 32 H 0.177 0.823 33 H 0.175 0.825 34 H 0.082 0.918 35 H 0.080 0.920 36 H 0.053 0.947 37 H 0.050 0.950 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 6.422 5.051 24.425 25.755 hybrid contribution -1.065 0.253 -0.395 1.164 sum 5.357 5.304 24.031 25.185 Atomic orbital electron populations 1.21828 0.91960 1.03370 1.03555 1.23023 0.98018 1.00578 0.92601 0.87965 1.23883 0.83364 0.98565 0.97548 1.88880 1.30840 1.86669 1.25308 1.23773 0.99594 0.99381 0.82434 1.22502 0.95991 0.91633 0.89384 0.86542 1.55433 1.79351 1.28605 1.22420 1.04535 0.78052 0.73098 0.72810 1.93555 1.74025 1.44320 1.85915 1.93549 1.77980 1.54775 1.72098 1.30500 1.24339 1.13527 1.05579 1.21181 1.00097 1.01267 0.91832 1.19506 0.92817 0.97457 0.94533 1.21575 0.92998 1.46502 0.97259 0.95354 1.26134 1.02789 0.94025 0.96698 1.70090 1.22917 1.49078 1.17317 0.85583 0.77443 0.78703 0.80459 1.19001 1.21279 1.15804 0.91401 0.90579 0.91507 0.90578 0.87178 0.90843 0.90026 0.73602 0.82331 0.82549 0.91840 0.92033 0.94718 0.95002 0.92457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.19 71.98 0.66 -0.52 16 2 C -0.12 -1.26 3.44 -9.49 -0.03 -1.29 16 3 H 0.10 0.93 7.83 -2.39 -0.02 0.92 16 4 C 0.04 0.49 7.17 72.67 0.52 1.01 16 5 O -0.40 -7.61 11.52 -148.98 -1.72 -9.32 16 6 C 0.03 0.50 7.50 72.36 0.54 1.04 16 7 C 0.11 1.67 3.05 45.98 0.14 1.81 16 8 H 0.12 1.39 6.96 -2.39 -0.02 1.38 16 9 N -1.10 -18.37 5.35 -165.27 -0.88 -19.25 16 10 S 2.62 66.21 5.40 -56.49 -0.31 65.91 16 11 O -0.99 -31.46 17.82 -127.65 -2.27 -33.73 16 12 O -0.99 -32.27 18.08 -127.65 -2.31 -34.58 16 13 C -0.61 -14.46 5.97 71.98 0.43 -14.03 16 14 C -0.10 -3.82 5.16 30.59 0.16 -3.66 16 15 C 0.00 -0.20 4.04 29.85 0.12 -0.08 16 16 C -0.55 -31.15 9.66 25.60 0.25 -30.90 16 17 H 0.03 1.80 7.99 -2.91 -0.02 1.78 16 18 C 0.00 0.01 5.47 84.65 0.46 0.47 16 19 N -0.95 -59.78 13.96 21.45 0.30 -59.48 16 20 Si 0.96 42.21 27.47 68.60 1.88 44.09 16 21 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 22 H -0.29 -12.60 7.11 99.48 0.71 -11.89 16 23 H -0.24 -9.14 6.54 99.48 0.65 -8.49 16 24 H 0.07 0.49 8.09 -2.39 -0.02 0.47 16 25 H 0.08 0.45 8.14 -2.39 -0.02 0.43 16 26 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 27 H 0.08 0.71 8.01 -2.39 -0.02 0.69 16 28 H 0.11 0.92 8.14 -2.38 -0.02 0.90 16 29 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.08 1.72 7.93 -2.39 -0.02 1.71 16 31 H 0.43 5.68 8.58 -96.75 -0.83 4.85 16 32 H 0.16 2.92 8.14 -2.39 -0.02 2.90 16 33 H 0.16 2.78 7.47 -2.39 -0.02 2.77 16 34 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 35 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 36 H 0.03 1.41 7.20 -2.39 -0.02 1.40 16 37 H 0.03 1.29 7.57 -2.39 -0.02 1.27 16 38 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 Total: -1.00 -78.77 323.94 -1.89 -80.66 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: 0.16 Total: 11.86 kcal Atomic # 6 Polarization: -49.40 SS G_CDS: 3.25 Total: -46.15 kcal Atomic # 7 Polarization: -78.15 SS G_CDS: -0.58 Total: -78.74 kcal Atomic # 8 Polarization: -71.34 SS G_CDS: -6.30 Total: -77.64 kcal Atomic # 14 Polarization: 42.21 SS G_CDS: 1.88 Total: 44.09 kcal Atomic # 16 Polarization: 66.21 SS G_CDS: -0.31 Total: 65.91 kcal Total: -78.77 -1.89 -80.66 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000921496782.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.188 kcal (2) G-P(sol) polarization free energy of solvation -78.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds