Wall clock time and date at job start Mon Mar 30 2020 01:29:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09006 * 110.45548 * 2 1 4 4 C 1.54477 * 110.62349 * 122.67715 * 2 1 3 5 5 O 1.44425 * 104.80278 * 142.68648 * 4 2 1 6 6 C 1.44430 * 105.27470 * 319.48700 * 5 4 2 7 7 C 1.54489 * 104.80163 * 40.50984 * 6 5 4 8 8 H 1.09000 * 110.62236 * 94.72519 * 7 6 5 9 9 N 1.46499 * 110.51307 * 217.37935 * 7 6 5 10 10 S 1.65597 * 119.99926 * 259.92071 * 9 7 6 11 11 O 1.42100 * 104.27735 * 180.79571 * 10 9 7 12 12 O 1.42101 * 104.27674 * 308.65500 * 10 9 7 13 13 C 1.81402 * 104.45066 * 64.71997 * 10 9 7 14 14 C 1.53002 * 109.47127 * 180.02562 * 13 10 9 15 15 C 1.52995 * 109.47263 * 180.02562 * 14 13 10 16 16 C 1.50703 * 109.47551 * 180.02562 * 15 14 13 17 17 H 1.08003 * 119.99614 * 359.97438 * 16 15 14 18 18 C 1.37870 * 120.00253 * 179.97438 * 16 15 14 19 19 N 1.31517 * 119.99972 * 359.97438 * 18 16 15 20 20 Si 1.86795 * 120.00000 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47164 * 0.02562 * 20 18 16 22 22 H 1.48499 * 109.47466 * 119.99957 * 20 18 16 23 23 H 1.48499 * 109.47423 * 240.00177 * 20 18 16 24 24 H 1.08997 * 109.47198 * 182.60958 * 1 2 3 25 25 H 1.09004 * 109.47351 * 302.61314 * 1 2 3 26 26 H 1.09004 * 109.46889 * 62.60960 * 1 2 3 27 27 H 1.09008 * 110.37338 * 261.51125 * 4 2 1 28 28 H 1.08996 * 110.37775 * 23.74450 * 4 2 1 29 29 H 1.08998 * 110.37118 * 281.68735 * 6 5 4 30 30 H 1.09002 * 110.37573 * 159.34321 * 6 5 4 31 31 H 0.97001 * 119.99790 * 79.63860 * 9 7 6 32 32 H 1.08990 * 109.47555 * 300.00369 * 13 10 9 33 33 H 1.09004 * 109.46533 * 60.00490 * 13 10 9 34 34 H 1.09004 * 109.47124 * 300.00530 * 14 13 10 35 35 H 1.08998 * 109.47317 * 60.00145 * 14 13 10 36 36 H 1.09004 * 109.47140 * 300.00100 * 15 14 13 37 37 H 1.09006 * 109.47528 * 59.99646 * 15 14 13 38 38 H 0.97003 * 119.99598 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9110 1.0213 0.0000 4 6 2.0741 -0.7806 1.2169 5 8 3.2435 -1.4683 0.7214 6 6 2.8788 -1.9394 -0.5943 7 6 2.0714 -0.7798 -1.2190 8 1 2.7182 -0.1434 -1.8230 9 7 0.9662 -1.3008 -2.0272 10 16 1.1135 -1.3859 -3.6744 11 8 -0.1328 -1.9108 -4.1110 12 8 1.5341 -0.0835 -4.0564 13 6 2.4425 -2.5898 -3.9485 14 6 2.6767 -2.7576 -5.4511 15 6 3.7971 -3.7735 -5.6823 16 6 4.0283 -3.9384 -7.1624 17 1 3.4350 -3.3753 -7.8676 18 6 4.9971 -4.8081 -7.6161 19 7 5.7199 -5.4934 -6.7573 20 14 5.2840 -5.0119 -9.4506 21 1 4.3487 -4.1339 -10.1985 22 1 6.6830 -4.6363 -9.7776 23 1 5.0489 -6.4271 -9.8343 24 1 -0.3633 -1.0266 0.0468 25 1 -0.3634 0.5539 0.8656 26 1 -0.3633 0.4728 -0.9125 27 1 2.3490 -0.0929 2.0169 28 1 1.3325 -1.4965 1.5711 29 1 2.2611 -2.8343 -0.5191 30 1 3.7716 -2.1420 -1.1858 31 1 0.1497 -1.5997 -1.5971 32 1 3.3580 -2.2342 -3.4760 33 1 2.1588 -3.5490 -3.5152 34 1 1.7611 -3.1131 -5.9241 35 1 2.9604 -1.7984 -5.8841 36 1 4.7128 -3.4184 -5.2093 37 1 3.5130 -4.7327 -5.2495 38 1 6.4013 -6.1055 -7.0767 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000921496783.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:07 Heat of formation + Delta-G solvation = -132.613047 kcal Electronic energy + Delta-G solvation = -20139.520042 eV Core-core repulsion = 16915.762024 eV Total energy + Delta-G solvation = -3223.758018 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.08624 -36.95809 -35.85162 -35.44286 -34.71056 -32.42016 -32.19081 -28.66180 -27.81627 -26.61635 -23.78998 -23.07837 -20.79742 -20.53526 -19.37108 -17.92335 -16.86975 -16.57403 -16.34651 -15.80171 -15.62317 -15.49877 -14.80895 -14.49077 -14.28095 -13.99863 -13.30633 -12.75438 -12.67852 -12.62172 -12.31730 -12.00602 -11.89415 -11.84761 -11.79527 -11.49168 -11.35743 -11.26346 -11.03707 -10.94925 -10.85790 -10.43916 -10.17583 -9.98219 -9.75051 -9.35841 -9.10636 -8.42549 -6.07228 -4.10337 0.38452 2.71443 3.28619 3.36299 3.41046 3.69399 3.86147 4.05217 4.34468 4.38613 4.41404 4.54568 4.77494 4.86251 4.94934 5.07468 5.10783 5.20911 5.24321 5.29442 5.34218 5.47723 5.58969 5.65677 5.77388 5.83827 5.88049 6.22883 6.40607 6.44328 6.78681 6.84403 7.54952 7.64378 7.90716 8.30971 8.96093 9.54675 11.03983 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.028538 B = 0.004010 C = 0.003640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.927168 B = 6981.657488 C = 7689.722570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.130 4.130 3 H 0.094 0.906 4 C 0.047 3.953 5 O -0.368 6.368 6 C 0.022 3.978 7 C 0.117 3.883 8 H 0.111 0.889 9 N -1.115 6.115 10 S 2.596 3.404 11 O -0.962 6.962 12 O -0.960 6.960 13 C -0.610 4.610 14 C -0.105 4.105 15 C 0.030 3.970 16 C -0.526 4.526 17 H 0.059 0.941 18 C 0.058 3.942 19 N -0.895 5.895 20 Si 0.894 3.106 21 H -0.272 1.272 22 H -0.283 1.283 23 H -0.283 1.283 24 H 0.059 0.941 25 H 0.061 0.939 26 H 0.067 0.933 27 H 0.093 0.907 28 H 0.062 0.938 29 H 0.072 0.928 30 H 0.103 0.897 31 H 0.416 0.584 32 H 0.126 0.874 33 H 0.130 0.870 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.021 0.979 37 H 0.021 0.979 38 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.088 9.257 16.668 21.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.150 4.150 3 H 0.113 0.887 4 C -0.030 4.030 5 O -0.286 6.286 6 C -0.057 4.057 7 C 0.008 3.992 8 H 0.129 0.871 9 N -0.874 5.874 10 S 2.693 3.307 11 O -0.952 6.952 12 O -0.950 6.950 13 C -0.742 4.742 14 C -0.145 4.145 15 C -0.008 4.008 16 C -0.565 4.565 17 H 0.077 0.923 18 C -0.144 4.144 19 N -0.534 5.534 20 Si 0.722 3.278 21 H -0.196 1.196 22 H -0.209 1.209 23 H -0.209 1.209 24 H 0.078 0.922 25 H 0.080 0.920 26 H 0.086 0.914 27 H 0.111 0.889 28 H 0.080 0.920 29 H 0.090 0.910 30 H 0.121 0.879 31 H 0.253 0.747 32 H 0.145 0.855 33 H 0.148 0.852 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.039 0.961 37 H 0.039 0.961 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -9.125 9.685 16.099 20.886 hybrid contribution 0.230 -0.820 -0.568 1.024 sum -8.894 8.865 15.531 19.973 Atomic orbital electron populations 1.21750 0.93668 1.02058 1.02741 1.22734 0.97347 1.00784 0.94130 0.88720 1.23551 0.88126 0.95109 0.96261 1.89180 1.34814 1.73941 1.30689 1.24145 1.00465 0.96602 0.84446 1.22234 0.88014 0.95098 0.93835 0.87071 1.55922 1.24816 1.79908 1.26741 1.05441 0.76504 0.76417 0.72384 1.93585 1.40528 1.81689 1.79384 1.93576 1.84132 1.36413 1.80891 1.30604 1.17794 1.16851 1.08915 1.21503 1.03007 1.02948 0.87032 1.19072 0.91784 0.92880 0.97085 1.21286 1.18846 1.24292 0.92026 0.92320 1.25017 0.95796 0.95597 0.97957 1.69968 1.22598 1.26978 1.33834 0.86501 0.78087 0.77951 0.85289 1.19603 1.20934 1.20941 0.92241 0.91960 0.91369 0.88859 0.91953 0.91022 0.87865 0.74729 0.85524 0.85156 0.91549 0.91529 0.96079 0.96090 0.92939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.96 7.91 37.16 0.29 -0.67 16 2 C -0.13 -0.99 3.71 -89.05 -0.33 -1.32 16 3 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 4 C 0.05 0.35 7.19 37.93 0.27 0.63 16 5 O -0.37 -3.92 11.65 -35.23 -0.41 -4.33 16 6 C 0.02 0.21 7.35 37.94 0.28 0.49 16 7 C 0.12 1.09 3.66 -66.36 -0.24 0.85 16 8 H 0.11 1.08 7.56 -51.93 -0.39 0.68 16 9 N -1.11 -11.04 4.66 -3.56 -0.02 -11.05 16 10 S 2.60 36.07 5.43 -107.50 -0.58 35.49 16 11 O -0.96 -16.20 18.08 -57.54 -1.04 -17.24 16 12 O -0.96 -16.18 17.45 -57.54 -1.00 -17.19 16 13 C -0.61 -8.89 6.07 37.16 0.23 -8.67 16 14 C -0.11 -2.08 5.16 -26.73 -0.14 -2.22 16 15 C 0.03 0.75 4.97 -27.88 -0.14 0.61 16 16 C -0.53 -14.70 9.11 -34.44 -0.31 -15.02 16 17 H 0.06 1.60 7.74 -52.48 -0.41 1.19 16 18 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 19 N -0.89 -26.40 13.29 55.43 0.74 -25.66 16 20 Si 0.89 21.48 29.54 -169.99 -5.02 16.46 16 21 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 22 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 23 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 24 H 0.06 0.35 6.88 -51.93 -0.36 -0.01 16 25 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.07 0.52 7.86 -51.93 -0.41 0.11 16 27 H 0.09 0.58 8.14 -51.92 -0.42 0.16 16 28 H 0.06 0.42 7.83 -51.93 -0.41 0.01 16 29 H 0.07 0.61 8.06 -51.93 -0.42 0.19 16 30 H 0.10 0.95 7.87 -51.93 -0.41 0.54 16 31 H 0.42 3.37 6.51 -34.47 -0.22 3.15 16 32 H 0.13 1.61 7.87 -51.93 -0.41 1.20 16 33 H 0.13 1.68 8.14 -51.92 -0.42 1.25 16 34 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 35 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 36 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 323.64 15.07 4.88 4.88 Total: -1.00 -34.95 323.64 -8.60 -43.55 By element: Atomic # 1 Polarization: 4.82 SS G_CDS: -5.95 Total: -1.13 kcal Atomic # 6 Polarization: -23.59 SS G_CDS: -0.19 Total: -23.78 kcal Atomic # 7 Polarization: -37.44 SS G_CDS: 0.72 Total: -36.72 kcal Atomic # 8 Polarization: -36.30 SS G_CDS: -2.45 Total: -38.76 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 16 Polarization: 36.07 SS G_CDS: -0.58 Total: 35.49 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -34.95 -8.60 -43.55 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000921496783.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.060 kcal (2) G-P(sol) polarization free energy of solvation -34.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds