Wall clock time and date at job start Mon Mar 30 2020 01:53:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42897 * 109.47584 * 2 1 4 4 C 1.42900 * 114.00385 * 180.02562 * 3 2 1 5 5 H 1.09004 * 110.88444 * 333.87604 * 4 3 2 6 6 C 1.55405 * 111.03994 * 97.68092 * 4 3 2 7 7 C 1.54325 * 102.82616 * 153.47156 * 6 4 3 8 8 N 1.47018 * 107.40412 * 337.97548 * 7 6 4 9 9 S 1.65606 * 125.64862 * 178.82599 * 8 7 6 10 10 O 1.42101 * 104.27728 * 206.09745 * 9 8 7 11 11 O 1.42097 * 104.27581 * 333.95374 * 9 8 7 12 12 C 1.81396 * 104.44863 * 90.02703 * 9 8 7 13 13 C 1.52994 * 109.47414 * 180.02562 * 12 9 8 14 14 C 1.50702 * 109.47404 * 179.97438 * 13 12 9 15 15 H 1.07993 * 119.99804 * 0.02562 * 14 13 12 16 16 C 1.37881 * 120.00028 * 179.97438 * 14 13 12 17 17 N 1.31518 * 119.99903 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 119.99886 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.46910 * 90.00054 * 18 16 14 20 20 H 1.48496 * 109.47308 * 210.00034 * 18 16 14 21 21 H 1.48497 * 109.47310 * 330.00172 * 18 16 14 22 22 C 1.47426 * 108.70517 * 358.86539 * 8 7 6 23 23 H 1.08999 * 109.47023 * 59.99795 * 1 2 3 24 24 H 1.09002 * 109.47148 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.46804 * 299.99940 * 1 2 3 26 26 H 1.09005 * 109.47545 * 240.00026 * 2 1 3 27 27 H 1.09004 * 109.47222 * 119.99751 * 2 1 3 28 28 H 1.09000 * 110.69068 * 35.18415 * 6 4 3 29 29 H 1.09002 * 110.85092 * 271.83409 * 6 4 3 30 30 H 1.09002 * 109.88192 * 218.47989 * 7 6 4 31 31 H 1.09000 * 109.88128 * 97.46841 * 7 6 4 32 32 H 1.09002 * 109.47237 * 300.00181 * 12 9 8 33 33 H 1.09007 * 109.47529 * 59.99899 * 12 9 8 34 34 H 1.09005 * 109.46752 * 299.99702 * 13 12 9 35 35 H 1.08998 * 109.47169 * 59.99995 * 13 12 9 36 36 H 0.96999 * 119.99549 * 180.02562 * 17 16 14 37 37 H 1.08999 * 110.36956 * 142.96999 * 22 8 7 38 38 H 1.09001 * 110.36709 * 265.18192 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4600 -0.0006 5 1 3.8907 0.5791 0.4475 6 6 3.9712 1.6975 -1.4382 7 6 5.2957 2.4486 -1.1867 8 7 5.2072 3.0618 0.1466 9 16 6.3954 3.9519 0.8804 10 8 6.1444 3.7933 2.2700 11 8 7.6003 3.4781 0.2948 12 6 6.0655 5.6594 0.3647 13 6 7.1094 6.5902 0.9849 14 6 6.8357 8.0087 0.5560 15 1 6.0005 8.2248 -0.0935 16 6 7.6511 9.0308 0.9938 17 7 8.6680 8.7677 1.7853 18 14 7.3114 10.7892 0.4627 19 1 6.3975 11.4336 1.4399 20 1 8.5885 11.5448 0.4066 21 1 6.6781 10.7871 -0.8804 22 6 3.8858 2.7523 0.7225 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 3.2805 2.3154 -2.0120 29 1 4.1552 0.7502 -1.9450 30 1 5.4324 3.2223 -1.9422 31 1 6.1305 1.7485 -1.2180 32 1 6.1184 5.7275 -0.7219 33 1 5.0708 5.9543 0.6992 34 1 7.0569 6.5222 2.0716 35 1 8.1039 6.2952 0.6500 36 1 9.2413 9.4868 2.0935 37 1 3.9710 2.5771 1.7950 38 1 3.1866 3.5651 0.5261 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000921833559.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:45 Heat of formation + Delta-G solvation = -152.003990 kcal Electronic energy + Delta-G solvation = -19879.911286 eV Core-core repulsion = 16655.312414 eV Total energy + Delta-G solvation = -3224.598872 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.10611 -38.23729 -37.73251 -37.06681 -35.91321 -33.14689 -32.43447 -30.99143 -29.32414 -27.60312 -23.94987 -23.69697 -23.12896 -22.21037 -19.98884 -19.19229 -18.44886 -18.09597 -17.14305 -17.03557 -16.55523 -16.34495 -15.92153 -15.58558 -15.26185 -14.63168 -14.49557 -14.38406 -13.82464 -13.75203 -13.58466 -13.36353 -13.25632 -13.19406 -12.94361 -12.81303 -12.72375 -12.47002 -12.27765 -12.23451 -12.14892 -12.01538 -11.76759 -11.57360 -11.18925 -10.65962 -10.46421 -9.97316 -8.27422 -6.41782 -0.80196 1.40362 1.42385 1.53566 1.64602 2.37311 2.63799 2.80553 3.05839 3.11545 3.46298 3.69122 3.98441 4.02620 4.07831 4.23568 4.27457 4.33651 4.47129 4.54467 4.56364 4.71569 4.75280 4.81149 4.92278 4.96001 5.04319 5.10060 5.18072 5.23593 5.25228 5.33798 5.39126 5.66748 6.04536 6.29099 6.71678 7.28493 8.84936 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.029279 B = 0.003774 C = 0.003578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.077244 B = 7416.656215 C = 7823.238936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.048 3.952 3 O -0.390 6.390 4 C 0.083 3.917 5 H 0.088 0.912 6 C -0.136 4.136 7 C 0.108 3.892 8 N -1.013 6.013 9 S 2.635 3.365 10 O -0.991 6.991 11 O -0.988 6.988 12 C -0.586 4.586 13 C 0.020 3.980 14 C -0.541 4.541 15 H 0.075 0.925 16 C -0.004 4.004 17 N -0.934 5.934 18 Si 0.976 3.024 19 H -0.270 1.270 20 H -0.282 1.282 21 H -0.258 1.258 22 C 0.109 3.891 23 H 0.060 0.940 24 H 0.089 0.911 25 H 0.055 0.945 26 H 0.063 0.937 27 H 0.055 0.945 28 H 0.092 0.908 29 H 0.105 0.895 30 H 0.081 0.919 31 H 0.074 0.926 32 H 0.141 0.859 33 H 0.139 0.861 34 H 0.007 0.993 35 H 0.008 0.992 36 H 0.268 0.732 37 H 0.080 0.920 38 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.512 -17.572 -7.805 24.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.028 4.028 3 O -0.309 6.309 4 C 0.023 3.977 5 H 0.106 0.894 6 C -0.175 4.175 7 C -0.017 4.017 8 N -0.853 5.853 9 S 2.734 3.266 10 O -0.982 6.982 11 O -0.979 6.979 12 C -0.719 4.719 13 C -0.019 4.019 14 C -0.580 4.580 15 H 0.093 0.907 16 C -0.202 4.202 17 N -0.574 5.574 18 Si 0.799 3.201 19 H -0.196 1.196 20 H -0.207 1.207 21 H -0.182 1.182 22 C -0.016 4.016 23 H 0.079 0.921 24 H 0.108 0.892 25 H 0.075 0.925 26 H 0.081 0.919 27 H 0.073 0.927 28 H 0.110 0.890 29 H 0.124 0.876 30 H 0.100 0.900 31 H 0.092 0.908 32 H 0.159 0.841 33 H 0.157 0.843 34 H 0.025 0.975 35 H 0.026 0.974 36 H 0.077 0.923 37 H 0.098 0.902 38 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -14.755 -17.695 -7.121 24.115 hybrid contribution 0.193 1.251 -0.130 1.273 sum -14.561 -16.444 -7.251 23.130 Atomic orbital electron populations 1.21769 0.92965 1.03326 1.02704 1.22756 0.96245 0.82613 1.01145 1.87874 1.19767 1.28312 1.94974 1.23209 0.81509 0.97215 0.95788 0.89408 1.23127 0.95209 1.02128 0.97058 1.21945 0.99527 0.97798 0.82397 1.58391 1.29680 1.67652 1.29530 1.04128 0.72469 0.76934 0.73079 1.93488 1.85326 1.86426 1.32927 1.93491 1.45357 1.79859 1.79154 1.30380 1.09776 1.19416 1.12291 1.18834 0.92470 0.95332 0.95249 1.21515 1.13875 0.91788 1.30804 0.90678 1.26135 0.94557 1.04739 0.94812 1.70103 1.17732 1.34599 1.34930 0.85286 0.77774 0.77751 0.79285 1.19570 1.20724 1.18152 1.22073 0.82876 0.98386 0.98264 0.92100 0.89230 0.92550 0.91867 0.92674 0.88969 0.87635 0.90033 0.90803 0.84051 0.84251 0.97483 0.97352 0.92326 0.90169 0.89694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 10.28 71.98 0.74 -0.89 16 2 C 0.05 0.62 6.49 71.98 0.47 1.09 16 3 O -0.39 -7.25 10.16 -148.98 -1.51 -8.76 16 4 C 0.08 1.51 3.54 32.08 0.11 1.62 16 5 H 0.09 1.43 7.83 -2.39 -0.02 1.41 16 6 C -0.14 -2.08 6.71 31.87 0.21 -1.87 16 7 C 0.11 2.25 6.89 86.73 0.60 2.85 16 8 N -1.01 -27.46 3.62 -506.42 -1.83 -29.29 16 9 S 2.63 97.73 5.65 -56.49 -0.32 97.41 16 10 O -0.99 -42.60 17.28 -127.65 -2.21 -44.80 16 11 O -0.99 -41.93 17.60 -127.65 -2.25 -44.17 16 12 C -0.59 -22.83 6.11 71.98 0.44 -22.39 16 13 C 0.02 1.07 4.98 29.85 0.15 1.22 16 14 C -0.54 -30.40 9.11 25.60 0.23 -30.16 16 15 H 0.08 3.90 7.74 -2.91 -0.02 3.88 16 16 C 0.00 -0.23 5.46 84.66 0.46 0.23 16 17 N -0.93 -57.30 13.29 21.45 0.28 -57.01 16 18 Si 0.98 43.60 29.54 68.60 2.03 45.62 16 19 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 20 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 21 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 22 C 0.11 2.58 6.81 86.86 0.59 3.17 16 23 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 24 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 25 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 26 H 0.06 0.63 8.14 -2.38 -0.02 0.61 16 27 H 0.05 0.65 8.12 -2.39 -0.02 0.63 16 28 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 29 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.14 4.82 8.14 -2.39 -0.02 4.80 16 33 H 0.14 4.83 8.14 -2.39 -0.02 4.81 16 34 H 0.01 0.39 8.14 -2.38 -0.02 0.37 16 35 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 36 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 37 H 0.08 2.02 7.67 -2.39 -0.02 2.00 16 38 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 Total: -1.00 -75.30 330.36 -0.78 -76.08 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: 1.02 Total: 10.05 kcal Atomic # 6 Polarization: -49.13 SS G_CDS: 4.01 Total: -45.12 kcal Atomic # 7 Polarization: -84.76 SS G_CDS: -1.55 Total: -86.30 kcal Atomic # 8 Polarization: -91.77 SS G_CDS: -5.97 Total: -97.74 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.62 kcal Atomic # 16 Polarization: 97.73 SS G_CDS: -0.32 Total: 97.41 kcal Total: -75.30 -0.78 -76.08 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000921833559.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.922 kcal (2) G-P(sol) polarization free energy of solvation -75.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds