Wall clock time and date at job start Mon Mar 30 2020 01:28:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.59816 * 2 1 4 4 C 1.53172 * 109.60405 * 239.67204 * 2 1 3 5 5 N 1.46472 * 109.90056 * 177.44013 * 4 2 1 6 6 C 1.46896 * 111.00305 * 196.99724 * 5 4 2 7 7 C 1.52996 * 109.47256 * 170.00053 * 6 5 4 8 8 H 1.09004 * 109.47066 * 60.00378 * 7 6 5 9 9 O 1.42903 * 109.47446 * 300.00254 * 7 6 5 10 10 C 1.50702 * 109.47159 * 180.02562 * 7 6 5 11 11 H 1.08002 * 120.00299 * 0.02562 * 10 7 6 12 12 C 1.37884 * 119.99942 * 179.72211 * 10 7 6 13 13 N 1.31514 * 119.99698 * 0.28408 * 12 10 7 14 14 Si 1.86794 * 119.99837 * 180.27476 * 12 10 7 15 15 H 1.48496 * 109.47341 * 0.02562 * 14 12 10 16 16 H 1.48508 * 109.46983 * 120.00379 * 14 12 10 17 17 H 1.48503 * 109.47491 * 240.00192 * 14 12 10 18 18 C 1.46477 * 112.46092 * 71.96682 * 5 4 2 19 19 C 1.53182 * 109.89731 * 288.03733 * 18 5 4 20 20 H 1.09002 * 109.60259 * 182.39510 * 19 18 5 21 21 C 1.53006 * 109.73762 * 302.80049 * 19 18 5 22 22 S 1.81818 * 108.68119 * 62.63653 * 19 18 5 23 23 O 1.42100 * 108.70494 * 193.42969 * 22 19 18 24 24 O 1.42098 * 108.70108 * 61.93467 * 22 19 18 25 25 H 1.09005 * 109.47110 * 180.32317 * 1 2 3 26 26 H 1.08999 * 109.47571 * 300.32799 * 1 2 3 27 27 H 1.09004 * 109.47236 * 60.33039 * 1 2 3 28 28 H 1.09007 * 109.39905 * 57.31127 * 4 2 1 29 29 H 1.08999 * 109.40242 * 297.57676 * 4 2 1 30 30 H 1.09004 * 109.46774 * 50.00253 * 6 5 4 31 31 H 1.09000 * 109.47723 * 290.00641 * 6 5 4 32 32 H 0.96697 * 113.99557 * 300.00558 * 9 7 6 33 33 H 0.97005 * 119.99651 * 179.97438 * 13 12 10 34 34 H 1.08997 * 109.39775 * 48.16312 * 18 5 4 35 35 H 1.08998 * 109.39885 * 167.90340 * 18 5 4 36 36 H 1.08996 * 109.47274 * 179.27254 * 21 19 18 37 37 H 1.09000 * 109.46622 * 299.27185 * 21 19 18 38 38 H 1.08999 * 109.46940 * 59.26675 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8956 1.0269 0.0000 4 6 2.0439 -0.7286 -1.2455 5 7 3.5073 -0.6796 -1.2835 6 6 4.0101 -0.9987 -2.6263 7 6 5.5085 -0.6974 -2.6948 8 1 6.0349 -1.3024 -1.9565 9 8 5.7291 0.6876 -2.4202 10 6 6.0242 -1.0241 -4.0726 11 1 5.3505 -1.4079 -4.8244 12 6 7.3549 -0.8273 -4.3753 13 7 8.1753 -0.3596 -3.4599 14 14 7.9925 -1.2250 -6.0854 15 1 6.8770 -1.7328 -6.9239 16 1 8.5552 0.0032 -6.7020 17 1 9.0521 -2.2612 -5.9902 18 6 4.1226 -1.5439 -0.2736 19 6 3.9254 -0.9395 1.1201 20 1 4.4214 -1.5641 1.8631 21 6 4.5153 0.4717 1.1595 22 16 2.1439 -0.8660 1.4762 23 8 1.9398 -0.0344 2.6102 24 8 1.6246 -2.1887 1.4773 25 1 -0.3633 -1.0277 0.0058 26 1 -0.3634 0.5189 0.8870 27 1 -0.3634 0.5087 -0.8930 28 1 1.6423 -0.2480 -2.1376 29 1 1.7170 -1.7681 -1.2176 30 1 3.4837 -0.3936 -3.3646 31 1 3.8419 -2.0550 -2.8359 32 1 5.2890 1.2861 -3.0392 33 1 9.1115 -0.2215 -3.6728 34 1 3.6588 -2.5297 -0.3096 35 1 5.1887 -1.6390 -0.4795 36 1 4.3612 0.9024 2.1488 37 1 5.5832 0.4251 0.9458 38 1 4.0220 1.0927 0.4119 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930523827.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:03 Heat of formation + Delta-G solvation = -115.855104 kcal Electronic energy + Delta-G solvation = -21165.227354 eV Core-core repulsion = 17942.196015 eV Total energy + Delta-G solvation = -3223.031339 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -38.71874 -36.95060 -35.98240 -35.53872 -34.09560 -32.52681 -32.13605 -28.53623 -26.89018 -25.75989 -23.63815 -22.64112 -21.47318 -20.04452 -18.46317 -17.30323 -16.68800 -16.49123 -15.71037 -15.35032 -15.20847 -14.64686 -14.41788 -14.03412 -13.87351 -13.46158 -13.06591 -12.87534 -12.67722 -12.50067 -12.14207 -12.07966 -11.92250 -11.87897 -11.70037 -11.33781 -11.23440 -11.12315 -11.00045 -10.82720 -10.69274 -10.39891 -10.11109 -9.80367 -9.08960 -8.64256 -8.27035 -7.92196 -6.09193 -4.27706 0.09329 2.69785 3.21234 3.30218 3.32510 3.63519 3.79641 4.17530 4.34598 4.45874 4.63633 4.70973 4.96215 5.03961 5.18554 5.20280 5.29219 5.41762 5.60726 5.71282 5.77185 5.82797 5.85110 5.96486 6.02898 6.10516 6.18711 6.37504 6.54610 6.64829 7.20901 7.27244 7.65189 7.76302 8.09223 8.75847 9.36812 9.52664 10.94847 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.035770 B = 0.004869 C = 0.004635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.580866 B = 5748.874360 C = 6039.862890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.556 4.556 3 H 0.146 0.854 4 C 0.068 3.932 5 N -0.540 5.540 6 C 0.034 3.966 7 C 0.235 3.765 8 H 0.057 0.943 9 O -0.552 6.552 10 C -0.576 4.576 11 H 0.056 0.944 12 C 0.081 3.919 13 N -0.857 5.857 14 Si 0.889 3.111 15 H -0.273 1.273 16 H -0.283 1.283 17 H -0.283 1.283 18 C 0.064 3.936 19 C -0.546 4.546 20 H 0.134 0.866 21 C -0.127 4.127 22 S 2.404 3.596 23 O -0.947 6.947 24 O -0.947 6.947 25 H 0.071 0.929 26 H 0.069 0.931 27 H 0.081 0.919 28 H 0.094 0.906 29 H 0.049 0.951 30 H 0.070 0.930 31 H 0.034 0.966 32 H 0.343 0.657 33 H 0.260 0.740 34 H 0.048 0.952 35 H 0.112 0.888 36 H 0.061 0.939 37 H 0.083 0.917 38 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.548 0.643 6.271 13.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.666 4.666 3 H 0.164 0.836 4 C -0.062 4.062 5 N -0.265 5.265 6 C -0.092 4.092 7 C 0.177 3.823 8 H 0.074 0.926 9 O -0.354 6.354 10 C -0.615 4.615 11 H 0.074 0.926 12 C -0.125 4.125 13 N -0.493 5.493 14 Si 0.716 3.284 15 H -0.198 1.198 16 H -0.209 1.209 17 H -0.209 1.209 18 C -0.065 4.065 19 C -0.658 4.658 20 H 0.152 0.848 21 C -0.185 4.185 22 S 2.588 3.412 23 O -0.944 6.944 24 O -0.944 6.944 25 H 0.090 0.910 26 H 0.088 0.912 27 H 0.100 0.900 28 H 0.112 0.888 29 H 0.067 0.933 30 H 0.089 0.911 31 H 0.052 0.948 32 H 0.186 0.814 33 H 0.070 0.930 34 H 0.066 0.934 35 H 0.130 0.870 36 H 0.080 0.920 37 H 0.102 0.898 38 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -11.353 0.572 7.679 13.718 hybrid contribution 0.353 -0.612 -2.269 2.377 sum -11.000 -0.040 5.410 12.259 Atomic orbital electron populations 1.21571 0.90244 1.03684 1.04256 1.29968 1.05581 1.14241 1.16843 0.83560 1.21882 0.89201 0.98551 0.96529 1.61194 1.03702 1.54662 1.06912 1.23106 1.01398 0.98734 0.85963 1.19379 0.85832 0.81400 0.95664 0.92594 1.86557 1.76132 1.17016 1.55707 1.21660 0.94661 1.46988 0.98148 0.92623 1.25007 0.96866 0.93836 0.96835 1.70079 1.04229 1.42007 1.32968 0.86620 0.78968 0.78136 0.84651 1.19751 1.20852 1.20894 1.21911 1.04372 0.92794 0.87418 1.29935 1.22584 1.07198 1.06058 0.84782 1.21498 1.04123 0.90693 1.02184 1.08658 0.79208 0.75967 0.77415 1.93543 1.84801 1.69309 1.46712 1.93544 1.77702 1.36145 1.86975 0.91035 0.91155 0.90024 0.88766 0.93305 0.91106 0.94800 0.81370 0.92981 0.93400 0.86979 0.92024 0.89816 0.89869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.34 9.21 37.16 0.34 -0.99 16 2 C -0.56 -6.36 2.83 -26.64 -0.08 -6.43 16 3 H 0.15 1.53 7.39 -51.93 -0.38 1.15 16 4 C 0.07 0.86 4.69 -3.97 -0.02 0.84 16 5 N -0.54 -8.29 3.45 -235.12 -0.81 -9.10 16 6 C 0.03 0.62 4.56 -3.83 -0.02 0.61 16 7 C 0.24 5.39 2.70 -27.88 -0.08 5.31 16 8 H 0.06 1.41 6.20 -51.93 -0.32 1.08 16 9 O -0.55 -12.96 12.59 -35.23 -0.44 -13.41 16 10 C -0.58 -14.79 8.76 -34.44 -0.30 -15.09 16 11 H 0.06 1.40 7.74 -52.49 -0.41 0.99 16 12 C 0.08 2.16 5.40 -17.82 -0.10 2.06 16 13 N -0.86 -24.22 12.83 55.43 0.71 -23.51 16 14 Si 0.89 20.34 29.54 -169.99 -5.02 15.32 16 15 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 16 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 17 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 18 C 0.06 0.97 4.76 -3.96 -0.02 0.95 16 19 C -0.55 -7.27 3.40 -26.63 -0.09 -7.37 16 20 H 0.13 1.53 8.14 -51.93 -0.42 1.11 16 21 C -0.13 -1.73 8.81 37.16 0.33 -1.40 16 22 S 2.40 32.55 4.29 -107.50 -0.46 32.09 16 23 O -0.95 -14.92 17.68 -57.79 -1.02 -15.94 16 24 O -0.95 -15.16 18.06 -57.79 -1.04 -16.21 16 25 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 28 H 0.09 1.09 7.77 -51.92 -0.40 0.68 16 29 H 0.05 0.61 7.93 -51.93 -0.41 0.20 16 30 H 0.07 1.22 7.84 -51.93 -0.41 0.82 16 31 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.34 7.27 9.04 45.56 0.41 7.68 16 33 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 34 H 0.05 0.69 7.93 -51.93 -0.41 0.27 16 35 H 0.11 1.92 5.79 -51.93 -0.30 1.62 16 36 H 0.06 0.75 7.93 -51.93 -0.41 0.34 16 37 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 38 H 0.08 1.14 6.48 -51.93 -0.34 0.80 16 LS Contribution 314.10 15.07 4.73 4.73 Total: -1.00 -31.88 314.10 -8.44 -40.32 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: -5.06 Total: 7.22 kcal Atomic # 6 Polarization: -21.49 SS G_CDS: -0.02 Total: -21.52 kcal Atomic # 7 Polarization: -32.50 SS G_CDS: -0.10 Total: -32.60 kcal Atomic # 8 Polarization: -43.05 SS G_CDS: -2.51 Total: -45.56 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.32 kcal Atomic # 16 Polarization: 32.55 SS G_CDS: -0.46 Total: 32.09 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -31.88 -8.44 -40.32 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930523827.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.537 kcal (2) G-P(sol) polarization free energy of solvation -31.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds