Wall clock time and date at job start Mon Mar 30 2020 01:28:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.59816 * 2 1 4 4 C 1.53172 * 109.60405 * 239.67204 * 2 1 3 5 5 N 1.46472 * 109.90056 * 177.44013 * 4 2 1 6 6 C 1.46896 * 111.00305 * 196.99724 * 5 4 2 7 7 C 1.52996 * 109.47256 * 170.00053 * 6 5 4 8 8 H 1.09004 * 109.47066 * 60.00378 * 7 6 5 9 9 O 1.42903 * 109.47446 * 300.00254 * 7 6 5 10 10 C 1.50702 * 109.47159 * 180.02562 * 7 6 5 11 11 H 1.08002 * 120.00299 * 0.02562 * 10 7 6 12 12 C 1.37884 * 119.99942 * 179.72211 * 10 7 6 13 13 N 1.31514 * 119.99698 * 0.28408 * 12 10 7 14 14 Si 1.86794 * 119.99837 * 180.27476 * 12 10 7 15 15 H 1.48496 * 109.47341 * 0.02562 * 14 12 10 16 16 H 1.48508 * 109.46983 * 120.00379 * 14 12 10 17 17 H 1.48503 * 109.47491 * 240.00192 * 14 12 10 18 18 C 1.46477 * 112.46092 * 71.96682 * 5 4 2 19 19 C 1.53182 * 109.89731 * 288.03733 * 18 5 4 20 20 H 1.09002 * 109.60259 * 182.39510 * 19 18 5 21 21 C 1.53006 * 109.73762 * 302.80049 * 19 18 5 22 22 S 1.81818 * 108.68119 * 62.63653 * 19 18 5 23 23 O 1.42100 * 108.70494 * 193.42969 * 22 19 18 24 24 O 1.42098 * 108.70108 * 61.93467 * 22 19 18 25 25 H 1.09005 * 109.47110 * 180.32317 * 1 2 3 26 26 H 1.08999 * 109.47571 * 300.32799 * 1 2 3 27 27 H 1.09004 * 109.47236 * 60.33039 * 1 2 3 28 28 H 1.09007 * 109.39905 * 57.31127 * 4 2 1 29 29 H 1.08999 * 109.40242 * 297.57676 * 4 2 1 30 30 H 1.09004 * 109.46774 * 50.00253 * 6 5 4 31 31 H 1.09000 * 109.47723 * 290.00641 * 6 5 4 32 32 H 0.96697 * 113.99557 * 300.00558 * 9 7 6 33 33 H 0.97005 * 119.99651 * 179.97438 * 13 12 10 34 34 H 1.08997 * 109.39775 * 48.16312 * 18 5 4 35 35 H 1.08998 * 109.39885 * 167.90340 * 18 5 4 36 36 H 1.08996 * 109.47274 * 179.27254 * 21 19 18 37 37 H 1.09000 * 109.46622 * 299.27185 * 21 19 18 38 38 H 1.08999 * 109.46940 * 59.26675 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8956 1.0269 0.0000 4 6 2.0439 -0.7286 -1.2455 5 7 3.5073 -0.6796 -1.2835 6 6 4.0101 -0.9987 -2.6263 7 6 5.5085 -0.6974 -2.6948 8 1 6.0349 -1.3024 -1.9565 9 8 5.7291 0.6876 -2.4202 10 6 6.0242 -1.0241 -4.0726 11 1 5.3505 -1.4079 -4.8244 12 6 7.3549 -0.8273 -4.3753 13 7 8.1753 -0.3596 -3.4599 14 14 7.9925 -1.2250 -6.0854 15 1 6.8770 -1.7328 -6.9239 16 1 8.5552 0.0032 -6.7020 17 1 9.0521 -2.2612 -5.9902 18 6 4.1226 -1.5439 -0.2736 19 6 3.9254 -0.9395 1.1201 20 1 4.4214 -1.5641 1.8631 21 6 4.5153 0.4717 1.1595 22 16 2.1439 -0.8660 1.4762 23 8 1.9398 -0.0344 2.6102 24 8 1.6246 -2.1887 1.4773 25 1 -0.3633 -1.0277 0.0058 26 1 -0.3634 0.5189 0.8870 27 1 -0.3634 0.5087 -0.8930 28 1 1.6423 -0.2480 -2.1376 29 1 1.7170 -1.7681 -1.2176 30 1 3.4837 -0.3936 -3.3646 31 1 3.8419 -2.0550 -2.8359 32 1 5.2890 1.2861 -3.0392 33 1 9.1115 -0.2215 -3.6728 34 1 3.6588 -2.5297 -0.3096 35 1 5.1887 -1.6390 -0.4795 36 1 4.3612 0.9024 2.1488 37 1 5.5832 0.4251 0.9458 38 1 4.0220 1.0927 0.4119 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930523827.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:03 Heat of formation + Delta-G solvation = -141.724689 kcal Electronic energy + Delta-G solvation = -21166.349143 eV Core-core repulsion = 17942.196015 eV Total energy + Delta-G solvation = -3224.153129 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.96666 -38.12986 -37.22350 -37.14653 -35.09978 -34.19032 -33.72001 -30.12964 -27.98028 -27.28908 -25.05843 -23.70132 -22.78823 -21.49482 -19.55209 -19.08946 -17.86639 -17.62989 -16.88660 -16.62553 -16.57266 -16.49231 -15.81859 -15.49810 -15.31752 -14.58889 -14.42378 -14.01785 -13.83645 -13.65279 -13.29961 -13.27722 -13.20337 -13.09297 -12.92881 -12.81545 -12.76008 -12.62344 -12.38187 -12.24606 -12.06701 -11.95243 -11.50159 -10.97836 -10.81573 -10.60943 -10.04639 -9.24198 -8.10833 -6.35027 -0.97859 1.40638 1.43710 1.53822 1.64385 2.38805 2.58494 2.66552 3.06099 3.16825 3.42176 3.58807 3.74203 3.92877 4.03193 4.13725 4.38913 4.40716 4.51092 4.55119 4.60585 4.70993 4.75685 4.82290 4.88999 4.95175 4.99276 5.09408 5.15496 5.41409 5.64377 5.79091 5.87523 6.14904 6.17056 6.78443 7.39704 7.70723 8.93217 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.035770 B = 0.004869 C = 0.004635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.580866 B = 5748.874360 C = 6039.862890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.537 4.537 3 H 0.162 0.838 4 C 0.064 3.936 5 N -0.543 5.543 6 C 0.050 3.950 7 C 0.235 3.765 8 H 0.026 0.974 9 O -0.565 6.565 10 C -0.585 4.585 11 H 0.060 0.940 12 C 0.029 3.971 13 N -0.898 5.898 14 Si 0.953 3.047 15 H -0.263 1.263 16 H -0.282 1.282 17 H -0.284 1.284 18 C 0.062 3.938 19 C -0.546 4.546 20 H 0.148 0.852 21 C -0.126 4.126 22 S 2.411 3.589 23 O -0.969 6.969 24 O -0.973 6.973 25 H 0.071 0.929 26 H 0.078 0.922 27 H 0.106 0.894 28 H 0.115 0.885 29 H 0.054 0.946 30 H 0.085 0.915 31 H 0.033 0.967 32 H 0.353 0.647 33 H 0.259 0.741 34 H 0.055 0.945 35 H 0.085 0.915 36 H 0.076 0.924 37 H 0.063 0.937 38 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.319 1.016 5.359 14.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.651 4.651 3 H 0.180 0.820 4 C -0.065 4.065 5 N -0.267 5.267 6 C -0.077 4.077 7 C 0.177 3.823 8 H 0.043 0.957 9 O -0.368 6.368 10 C -0.623 4.623 11 H 0.078 0.922 12 C -0.174 4.174 13 N -0.535 5.535 14 Si 0.779 3.221 15 H -0.187 1.187 16 H -0.207 1.207 17 H -0.210 1.210 18 C -0.067 4.067 19 C -0.657 4.657 20 H 0.166 0.834 21 C -0.184 4.184 22 S 2.598 3.402 23 O -0.967 6.967 24 O -0.970 6.970 25 H 0.090 0.910 26 H 0.097 0.903 27 H 0.124 0.876 28 H 0.133 0.867 29 H 0.072 0.928 30 H 0.103 0.897 31 H 0.052 0.948 32 H 0.197 0.803 33 H 0.068 0.932 34 H 0.073 0.927 35 H 0.103 0.897 36 H 0.095 0.905 37 H 0.082 0.918 38 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -13.135 0.927 6.787 14.814 hybrid contribution 0.871 -0.714 -1.975 2.274 sum -12.264 0.213 4.812 13.176 Atomic orbital electron populations 1.21721 0.88343 1.04360 1.05957 1.29845 1.07067 1.14201 1.13949 0.82047 1.22026 0.87086 0.99424 0.97962 1.61091 1.05582 1.54643 1.05418 1.22711 0.98139 0.98916 0.87909 1.19229 0.88824 0.80774 0.93497 0.95672 1.86513 1.76809 1.17438 1.56056 1.22108 0.94850 1.45947 0.99428 0.92219 1.25801 0.97349 0.93875 1.00332 1.70211 1.04428 1.43872 1.35013 0.85605 0.78382 0.77717 0.80395 1.18731 1.20748 1.20964 1.21858 1.02862 0.93533 0.88412 1.29939 1.23260 1.07239 1.05299 0.83373 1.21475 1.02835 0.91001 1.03060 1.08341 0.78631 0.75342 0.77907 1.93511 1.84967 1.69515 1.48668 1.93508 1.77990 1.37812 1.87688 0.90955 0.90278 0.87579 0.86662 0.92794 0.89706 0.94837 0.80319 0.93175 0.92695 0.89669 0.90550 0.91756 0.89818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.28 9.21 71.98 0.66 -1.62 16 2 C -0.54 -10.75 2.83 30.65 0.09 -10.67 16 3 H 0.16 2.83 7.39 -2.39 -0.02 2.81 16 4 C 0.06 1.43 4.69 86.44 0.41 1.83 16 5 N -0.54 -15.89 3.45 -897.79 -3.10 -18.98 16 6 C 0.05 1.76 4.56 86.30 0.39 2.15 16 7 C 0.23 10.82 2.70 29.85 0.08 10.90 16 8 H 0.03 1.33 6.20 -2.38 -0.01 1.31 16 9 O -0.57 -26.66 12.59 -148.98 -1.87 -28.53 16 10 C -0.58 -29.91 8.76 25.60 0.22 -29.68 16 11 H 0.06 2.94 7.74 -2.91 -0.02 2.92 16 12 C 0.03 1.54 5.40 84.66 0.46 2.00 16 13 N -0.90 -51.59 12.83 21.45 0.28 -51.32 16 14 Si 0.95 41.68 29.54 68.60 2.03 43.70 16 15 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 16 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 17 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 18 C 0.06 1.88 4.76 86.44 0.41 2.29 16 19 C -0.55 -14.27 3.40 30.66 0.10 -14.16 16 20 H 0.15 3.35 8.14 -2.39 -0.02 3.33 16 21 C -0.13 -3.37 8.81 71.98 0.63 -2.73 16 22 S 2.41 61.84 4.29 -56.49 -0.24 61.59 16 23 O -0.97 -29.25 17.68 -127.41 -2.25 -31.50 16 24 O -0.97 -30.04 18.06 -127.41 -2.30 -32.34 16 25 H 0.07 1.15 8.14 -2.38 -0.02 1.13 16 26 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 27 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 28 H 0.12 2.18 7.77 -2.38 -0.02 2.16 16 29 H 0.05 1.20 7.93 -2.39 -0.02 1.18 16 30 H 0.08 2.72 7.84 -2.38 -0.02 2.70 16 31 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.35 14.77 9.04 -74.06 -0.67 14.10 16 33 H 0.26 14.20 8.31 -92.70 -0.77 13.43 16 34 H 0.06 1.55 7.93 -2.39 -0.02 1.54 16 35 H 0.09 3.05 5.79 -2.39 -0.01 3.03 16 36 H 0.08 1.79 7.93 -2.39 -0.02 1.77 16 37 H 0.06 1.96 8.14 -2.39 -0.02 1.95 16 38 H 0.08 2.20 6.48 -2.39 -0.02 2.18 16 Total: -1.00 -67.82 314.10 -3.62 -71.44 By element: Atomic # 1 Polarization: 25.24 SS G_CDS: 0.39 Total: 25.63 kcal Atomic # 6 Polarization: -43.14 SS G_CDS: 3.46 Total: -39.68 kcal Atomic # 7 Polarization: -67.48 SS G_CDS: -2.82 Total: -70.30 kcal Atomic # 8 Polarization: -85.95 SS G_CDS: -6.43 Total: -92.38 kcal Atomic # 14 Polarization: 41.68 SS G_CDS: 2.03 Total: 43.70 kcal Atomic # 16 Polarization: 61.84 SS G_CDS: -0.24 Total: 61.59 kcal Total: -67.82 -3.62 -71.44 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930523827.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.283 kcal (2) G-P(sol) polarization free energy of solvation -67.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds