Wall clock time and date at job start Mon Mar 30 2020 01:56:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.20827 * 120.00158 * 2 1 4 4 O 1.34232 * 119.99907 * 179.97438 * 2 1 3 5 5 C 1.45202 * 117.00036 * 180.02562 * 4 2 1 6 6 H 1.08996 * 109.47259 * 30.00044 * 5 4 2 7 7 C 1.50702 * 109.46592 * 269.99611 * 5 4 2 8 8 O 1.21285 * 120.00259 * 339.65389 * 7 5 4 9 9 N 1.34776 * 119.99462 * 159.65825 * 7 5 4 10 10 C 1.46499 * 120.00357 * 4.17271 * 9 7 5 11 11 C 1.37098 * 119.99916 * 184.17910 * 9 7 5 12 12 H 1.08004 * 120.00246 * 6.84759 * 11 9 7 13 13 C 1.38943 * 120.00412 * 186.84974 * 11 9 7 14 14 N 1.31414 * 119.99880 * 354.69750 * 13 11 9 15 15 Si 1.86800 * 120.00415 * 174.69924 * 13 11 9 16 16 H 1.48502 * 109.47241 * 59.99625 * 15 13 11 17 17 H 1.48503 * 109.47553 * 180.02562 * 15 13 11 18 18 H 1.48504 * 109.47001 * 299.99679 * 15 13 11 19 19 C 1.50698 * 109.47212 * 150.00005 * 5 4 2 20 20 C 1.38241 * 119.99993 * 43.90055 * 19 5 4 21 21 C 1.38233 * 119.99944 * 179.79053 * 20 19 5 22 22 C 1.38240 * 120.00104 * 0.43835 * 21 20 19 23 23 C 1.38236 * 119.99739 * 359.81696 * 22 21 20 24 24 C 1.38228 * 120.00142 * 224.17737 * 19 5 4 25 25 H 1.08993 * 109.47357 * 270.00748 * 1 2 3 26 26 H 1.09002 * 109.46560 * 30.00555 * 1 2 3 27 27 H 1.08993 * 109.47169 * 150.00007 * 1 2 3 28 28 H 1.09003 * 109.47300 * 234.52737 * 10 9 7 29 29 H 1.08996 * 109.46846 * 354.52767 * 10 9 7 30 30 H 1.09000 * 109.46789 * 114.52431 * 10 9 7 31 31 H 0.97000 * 120.00261 * 180.02562 * 14 13 11 32 32 H 1.08004 * 119.99970 * 0.02562 * 20 19 5 33 33 H 1.07996 * 120.00019 * 180.27990 * 21 20 19 34 34 H 1.07990 * 120.00248 * 179.83536 * 22 21 20 35 35 H 1.07995 * 120.00170 * 179.97438 * 23 22 21 36 36 H 1.08001 * 119.99845 * 359.97438 * 24 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1111 1.0464 0.0000 4 8 2.1781 -1.1625 0.0005 5 6 3.6281 -1.0865 0.0011 6 1 3.9442 -0.1787 0.5148 7 6 4.1302 -1.0607 -1.4196 8 8 3.4243 -1.4636 -2.3198 9 7 5.3638 -0.5898 -1.6898 10 6 6.2508 -0.1886 -0.5951 11 6 5.7886 -0.4861 -2.9892 12 1 5.0998 -0.6757 -3.7993 13 6 7.1051 -0.1373 -3.2641 14 7 7.9152 0.1946 -2.2841 15 14 7.7236 -0.1400 -5.0267 16 1 6.9232 0.8157 -5.8337 17 1 9.1519 0.2657 -5.0509 18 1 7.5876 -1.5045 -5.5969 19 6 4.1939 -2.2888 0.7119 20 6 3.6762 -3.5462 0.4627 21 6 4.1980 -4.6496 1.1115 22 6 5.2316 -4.4946 2.0164 23 6 5.7457 -3.2367 2.2696 24 6 5.2267 -2.1338 1.6175 25 1 -0.3634 0.0001 1.0276 26 1 -0.3632 0.8900 -0.5139 27 1 -0.3633 -0.8899 -0.5138 28 1 6.5873 0.8355 -0.7567 29 1 5.7115 -0.2490 0.3502 30 1 7.1136 -0.8540 -0.5642 31 1 8.8342 0.4386 -2.4760 32 1 2.8665 -3.6669 -0.2418 33 1 3.7966 -5.6324 0.9135 34 1 5.6375 -5.3563 2.5253 35 1 6.5528 -3.1155 2.9768 36 1 5.6284 -1.1510 1.8152 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001144915594.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:39 Heat of formation + Delta-G solvation = -70.797158 kcal Electronic energy + Delta-G solvation = -21973.385484 eV Core-core repulsion = 18616.864052 eV Total energy + Delta-G solvation = -3356.521431 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.45248 -39.00964 -37.94615 -36.03241 -34.66160 -32.41417 -31.29278 -30.67409 -30.02331 -27.15419 -26.13525 -24.15405 -22.48482 -21.54723 -21.04311 -19.01423 -17.33087 -17.07000 -17.02849 -16.44342 -15.77860 -15.32032 -14.82966 -14.61876 -14.18919 -14.01909 -13.87105 -13.18259 -12.99737 -12.82071 -12.70453 -12.42462 -12.21025 -11.77351 -11.71877 -11.55404 -11.06604 -10.98113 -10.96476 -10.71368 -10.53302 -10.41610 -10.21451 -10.07798 -9.05473 -8.89319 -8.65904 -8.11445 -7.90002 -6.27566 -3.84084 1.48073 1.65715 2.51796 2.99693 3.16620 3.22561 3.27596 3.73172 4.01335 4.12924 4.72173 4.93201 5.06285 5.09502 5.17974 5.23614 5.34125 5.35092 5.40353 5.51670 5.66352 5.77513 5.78404 5.88019 6.11287 6.27791 6.31855 6.63940 6.70474 6.75624 6.92097 7.07183 7.20172 7.36589 7.52442 7.96428 8.08868 8.43884 9.13261 9.37376 9.89426 10.65995 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.013945 B = 0.007293 C = 0.005525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2007.412609 B = 3838.529640 C = 5066.333781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.457 3.543 3 O -0.513 6.513 4 O -0.328 6.328 5 C 0.123 3.877 6 H 0.102 0.898 7 C 0.428 3.572 8 O -0.583 6.583 9 N -0.432 5.432 10 C 0.109 3.891 11 C -0.299 4.299 12 H 0.104 0.896 13 C 0.028 3.972 14 N -0.884 5.884 15 Si 0.934 3.066 16 H -0.272 1.272 17 H -0.282 1.282 18 H -0.272 1.272 19 C -0.076 4.076 20 C -0.083 4.083 21 C -0.126 4.126 22 C -0.119 4.119 23 C -0.122 4.122 24 C -0.103 4.103 25 H 0.100 0.900 26 H 0.100 0.900 27 H 0.094 0.906 28 H 0.076 0.924 29 H 0.023 0.977 30 H 0.070 0.930 31 H 0.268 0.732 32 H 0.129 0.871 33 H 0.121 0.879 34 H 0.119 0.881 35 H 0.123 0.877 36 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.639 -4.838 10.330 13.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.301 3.699 3 O -0.402 6.402 4 O -0.244 6.244 5 C 0.065 3.935 6 H 0.120 0.880 7 C 0.214 3.786 8 O -0.468 6.468 9 N -0.150 5.150 10 C -0.034 4.034 11 C -0.427 4.427 12 H 0.122 0.878 13 C -0.174 4.174 14 N -0.525 5.525 15 Si 0.760 3.240 16 H -0.198 1.198 17 H -0.208 1.208 18 H -0.198 1.198 19 C -0.077 4.077 20 C -0.101 4.101 21 C -0.144 4.144 22 C -0.137 4.137 23 C -0.140 4.140 24 C -0.121 4.121 25 H 0.119 0.881 26 H 0.118 0.882 27 H 0.112 0.888 28 H 0.094 0.906 29 H 0.041 0.959 30 H 0.089 0.911 31 H 0.078 0.922 32 H 0.147 0.853 33 H 0.139 0.861 34 H 0.137 0.863 35 H 0.141 0.859 36 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -6.533 -4.654 9.891 12.735 hybrid contribution 0.691 0.201 -0.788 1.067 sum -5.842 -4.454 9.104 11.698 Atomic orbital electron populations 1.21550 0.87308 1.05842 1.05180 1.23794 0.92145 0.81906 0.72092 1.90686 1.70764 1.33068 1.45635 1.86500 1.20491 1.34368 1.83014 1.21256 0.77379 0.97890 0.97013 0.88017 1.19579 0.84226 0.86084 0.88693 1.90514 1.57141 1.52728 1.46433 1.43621 1.11361 1.52763 1.07251 1.22060 0.92714 1.03176 0.85491 1.19779 0.95307 1.44493 0.83125 0.87782 1.25347 0.95688 0.96292 1.00053 1.70147 1.06744 1.44634 1.31004 0.85870 0.77544 0.79012 0.81533 1.19772 1.20770 1.19776 1.19378 0.97524 0.93736 0.97067 1.21060 0.99290 0.91528 0.98189 1.21113 0.97387 0.98462 0.97414 1.21135 0.96938 0.97197 0.98420 1.21029 1.00156 0.92510 1.00332 1.21114 0.95999 0.99620 0.95318 0.88142 0.88153 0.88758 0.90572 0.95921 0.91115 0.92162 0.85295 0.86069 0.86271 0.85875 0.85343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.61 10.41 36.00 0.37 -1.24 16 2 C 0.46 8.23 8.03 36.00 0.29 8.52 16 3 O -0.51 -10.98 16.32 -18.75 -0.31 -11.29 16 4 O -0.33 -6.44 8.98 -45.65 -0.41 -6.85 16 5 C 0.12 2.61 1.85 -29.03 -0.05 2.55 16 6 H 0.10 2.13 5.58 -51.93 -0.29 1.84 16 7 C 0.43 11.20 6.79 -10.98 -0.07 11.12 16 8 O -0.58 -17.00 16.23 -13.17 -0.21 -17.21 16 9 N -0.43 -11.71 3.03 -122.20 -0.37 -12.08 16 10 C 0.11 2.58 8.18 59.85 0.49 3.07 16 11 C -0.30 -8.65 9.54 -14.94 -0.14 -8.80 16 12 H 0.10 3.13 7.21 -52.48 -0.38 2.76 16 13 C 0.03 0.76 5.46 -17.47 -0.10 0.67 16 14 N -0.88 -23.52 9.46 55.50 0.52 -23.00 16 15 Si 0.93 21.20 29.56 -169.99 -5.02 16.18 16 16 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 17 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 18 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 19 C -0.08 -1.42 4.75 -104.63 -0.50 -1.92 16 20 C -0.08 -1.43 9.32 -39.58 -0.37 -1.80 16 21 C -0.13 -1.80 10.05 -39.58 -0.40 -2.20 16 22 C -0.12 -1.57 10.05 -39.58 -0.40 -1.96 16 23 C -0.12 -1.69 10.05 -39.58 -0.40 -2.09 16 24 C -0.10 -1.66 8.58 -39.58 -0.34 -2.00 16 25 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 26 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 27 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 28 H 0.08 1.91 6.96 -51.93 -0.36 1.55 16 29 H 0.02 0.46 2.80 -51.93 -0.15 0.31 16 30 H 0.07 1.74 7.14 -51.93 -0.37 1.37 16 31 H 0.27 6.73 8.31 -40.82 -0.34 6.39 16 32 H 0.13 2.30 7.90 -52.48 -0.41 1.89 16 33 H 0.12 1.41 8.06 -52.49 -0.42 0.99 16 34 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 35 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 36 H 0.13 1.93 6.30 -52.49 -0.33 1.60 16 LS Contribution 308.73 15.07 4.65 4.65 Total: -1.00 -34.30 308.73 -6.72 -41.02 By element: Atomic # 1 Polarization: 8.61 SS G_CDS: -3.96 Total: 4.65 kcal Atomic # 6 Polarization: 5.54 SS G_CDS: -1.61 Total: 3.93 kcal Atomic # 7 Polarization: -35.23 SS G_CDS: 0.16 Total: -35.07 kcal Atomic # 8 Polarization: -34.42 SS G_CDS: -0.93 Total: -35.35 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -34.30 -6.72 -41.02 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001144915594.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.779 kcal (2) G-P(sol) polarization free energy of solvation -34.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds