Wall clock time and date at job start Mon Mar 30 2020 01:56:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.20827 * 120.00158 * 2 1 4 4 O 1.34232 * 119.99907 * 179.97438 * 2 1 3 5 5 C 1.45202 * 117.00036 * 180.02562 * 4 2 1 6 6 H 1.08996 * 109.47259 * 30.00044 * 5 4 2 7 7 C 1.50702 * 109.46592 * 269.99611 * 5 4 2 8 8 O 1.21285 * 120.00259 * 339.65389 * 7 5 4 9 9 N 1.34776 * 119.99462 * 159.65825 * 7 5 4 10 10 C 1.46499 * 120.00357 * 4.17271 * 9 7 5 11 11 C 1.37098 * 119.99916 * 184.17910 * 9 7 5 12 12 H 1.08004 * 120.00246 * 6.84759 * 11 9 7 13 13 C 1.38943 * 120.00412 * 186.84974 * 11 9 7 14 14 N 1.31414 * 119.99880 * 354.69750 * 13 11 9 15 15 Si 1.86800 * 120.00415 * 174.69924 * 13 11 9 16 16 H 1.48502 * 109.47241 * 59.99625 * 15 13 11 17 17 H 1.48503 * 109.47553 * 180.02562 * 15 13 11 18 18 H 1.48504 * 109.47001 * 299.99679 * 15 13 11 19 19 C 1.50698 * 109.47212 * 150.00005 * 5 4 2 20 20 C 1.38241 * 119.99993 * 43.90055 * 19 5 4 21 21 C 1.38233 * 119.99944 * 179.79053 * 20 19 5 22 22 C 1.38240 * 120.00104 * 0.43835 * 21 20 19 23 23 C 1.38236 * 119.99739 * 359.81696 * 22 21 20 24 24 C 1.38228 * 120.00142 * 224.17737 * 19 5 4 25 25 H 1.08993 * 109.47357 * 270.00748 * 1 2 3 26 26 H 1.09002 * 109.46560 * 30.00555 * 1 2 3 27 27 H 1.08993 * 109.47169 * 150.00007 * 1 2 3 28 28 H 1.09003 * 109.47300 * 234.52737 * 10 9 7 29 29 H 1.08996 * 109.46846 * 354.52767 * 10 9 7 30 30 H 1.09000 * 109.46789 * 114.52431 * 10 9 7 31 31 H 0.97000 * 120.00261 * 180.02562 * 14 13 11 32 32 H 1.08004 * 119.99970 * 0.02562 * 20 19 5 33 33 H 1.07996 * 120.00019 * 180.27990 * 21 20 19 34 34 H 1.07990 * 120.00248 * 179.83536 * 22 21 20 35 35 H 1.07995 * 120.00170 * 179.97438 * 23 22 21 36 36 H 1.08001 * 119.99845 * 359.97438 * 24 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1111 1.0464 0.0000 4 8 2.1781 -1.1625 0.0005 5 6 3.6281 -1.0865 0.0011 6 1 3.9442 -0.1787 0.5148 7 6 4.1302 -1.0607 -1.4196 8 8 3.4243 -1.4636 -2.3198 9 7 5.3638 -0.5898 -1.6898 10 6 6.2508 -0.1886 -0.5951 11 6 5.7886 -0.4861 -2.9892 12 1 5.0998 -0.6757 -3.7993 13 6 7.1051 -0.1373 -3.2641 14 7 7.9152 0.1946 -2.2841 15 14 7.7236 -0.1400 -5.0267 16 1 6.9232 0.8157 -5.8337 17 1 9.1519 0.2657 -5.0509 18 1 7.5876 -1.5045 -5.5969 19 6 4.1939 -2.2888 0.7119 20 6 3.6762 -3.5462 0.4627 21 6 4.1980 -4.6496 1.1115 22 6 5.2316 -4.4946 2.0164 23 6 5.7457 -3.2367 2.2696 24 6 5.2267 -2.1338 1.6175 25 1 -0.3634 0.0001 1.0276 26 1 -0.3632 0.8900 -0.5139 27 1 -0.3633 -0.8899 -0.5138 28 1 6.5873 0.8355 -0.7567 29 1 5.7115 -0.2490 0.3502 30 1 7.1136 -0.8540 -0.5642 31 1 8.8342 0.4386 -2.4760 32 1 2.8665 -3.6669 -0.2418 33 1 3.7966 -5.6324 0.9135 34 1 5.6375 -5.3563 2.5253 35 1 6.5528 -3.1155 2.9768 36 1 5.6284 -1.1510 1.8152 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001144915594.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:39 Heat of formation + Delta-G solvation = -91.621711 kcal Electronic energy + Delta-G solvation = -21974.288504 eV Core-core repulsion = 18616.864052 eV Total energy + Delta-G solvation = -3357.424452 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.02095 -40.49256 -39.61872 -37.63738 -36.73867 -34.11908 -33.04836 -31.86537 -31.10498 -28.88847 -27.96197 -26.10643 -23.72691 -22.90541 -22.50504 -20.78232 -19.16067 -18.83100 -18.48914 -18.15046 -17.10801 -17.06248 -16.32179 -16.22179 -15.88912 -15.68941 -15.43658 -14.66230 -14.40331 -14.37013 -13.80640 -13.73471 -13.60575 -13.48398 -13.30221 -13.11277 -12.85489 -12.80457 -12.54208 -12.43952 -12.16238 -12.06530 -11.75442 -11.68975 -11.11714 -10.59397 -10.01817 -9.83785 -9.67713 -8.33945 -6.02067 0.25476 0.47964 1.08305 1.32161 1.35673 1.46836 1.63092 1.81698 2.20846 2.74537 3.00006 3.02365 3.48923 3.69311 3.78169 3.85727 4.09300 4.15316 4.24063 4.41563 4.49437 4.54202 4.59772 4.69617 4.86391 4.97022 5.07072 5.12962 5.33528 5.34898 5.36387 5.51975 5.57569 5.62193 5.88954 6.06389 6.32814 6.61687 7.02293 7.30052 7.82547 8.57242 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.013945 B = 0.007293 C = 0.005525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2007.412609 B = 3838.529640 C = 5066.333781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.444 3.556 3 O -0.556 6.556 4 O -0.333 6.333 5 C 0.135 3.865 6 H 0.098 0.902 7 C 0.416 3.584 8 O -0.626 6.626 9 N -0.446 5.446 10 C 0.123 3.877 11 C -0.349 4.349 12 H 0.077 0.923 13 C -0.001 4.001 14 N -0.890 5.890 15 Si 0.998 3.002 16 H -0.272 1.272 17 H -0.261 1.261 18 H -0.272 1.272 19 C -0.105 4.105 20 C -0.105 4.105 21 C -0.124 4.124 22 C -0.108 4.108 23 C -0.118 4.118 24 C -0.115 4.115 25 H 0.138 0.862 26 H 0.113 0.887 27 H 0.109 0.891 28 H 0.058 0.942 29 H 0.055 0.945 30 H 0.062 0.938 31 H 0.276 0.724 32 H 0.111 0.889 33 H 0.150 0.850 34 H 0.161 0.839 35 H 0.158 0.842 36 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.912 -6.107 11.876 14.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.291 3.709 3 O -0.447 6.447 4 O -0.248 6.248 5 C 0.077 3.923 6 H 0.115 0.885 7 C 0.205 3.795 8 O -0.515 6.515 9 N -0.164 5.164 10 C -0.019 4.019 11 C -0.476 4.476 12 H 0.095 0.905 13 C -0.202 4.202 14 N -0.529 5.529 15 Si 0.820 3.180 16 H -0.197 1.197 17 H -0.185 1.185 18 H -0.198 1.198 19 C -0.106 4.106 20 C -0.123 4.123 21 C -0.142 4.142 22 C -0.126 4.126 23 C -0.135 4.135 24 C -0.133 4.133 25 H 0.156 0.844 26 H 0.131 0.869 27 H 0.127 0.873 28 H 0.077 0.923 29 H 0.073 0.927 30 H 0.080 0.920 31 H 0.087 0.913 32 H 0.129 0.871 33 H 0.167 0.833 34 H 0.178 0.822 35 H 0.175 0.825 36 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -5.798 -5.919 11.480 14.158 hybrid contribution 0.463 0.562 -1.206 1.409 sum -5.335 -5.357 10.273 12.756 Atomic orbital electron populations 1.21768 0.81903 1.07159 1.07970 1.25284 0.94522 0.80810 0.70331 1.90658 1.72053 1.34218 1.47747 1.86559 1.19739 1.35531 1.82990 1.20995 0.78447 0.99326 0.93575 0.88452 1.20505 0.83649 0.84760 0.90626 1.90451 1.58199 1.54346 1.48494 1.43874 1.12259 1.52827 1.07443 1.21921 0.92399 1.01529 0.86061 1.19760 0.96242 1.47943 0.83696 0.90543 1.26154 0.94963 0.94791 1.04339 1.70229 1.07083 1.43086 1.32515 0.84948 0.77782 0.78869 0.76416 1.19674 1.18518 1.19755 1.19358 0.99335 0.93003 0.98916 1.21084 0.99775 0.92379 0.99095 1.21457 0.97360 0.98597 0.96751 1.21638 0.95508 0.98318 0.97107 1.21468 1.00297 0.91901 0.99867 1.21283 0.95561 1.01028 0.95459 0.84356 0.86876 0.87266 0.92339 0.92698 0.91992 0.91320 0.87128 0.83264 0.82179 0.82456 0.84896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.80 10.41 71.23 0.74 -2.06 16 2 C 0.44 16.32 8.03 71.23 0.57 16.89 16 3 O -0.56 -24.65 16.32 21.96 0.36 -24.29 16 4 O -0.33 -13.54 8.98 -45.33 -0.41 -13.95 16 5 C 0.14 5.96 1.85 29.10 0.05 6.01 16 6 H 0.10 4.26 5.58 -2.39 -0.01 4.25 16 7 C 0.42 22.96 6.79 87.66 0.60 23.55 16 8 O -0.63 -38.81 16.23 14.86 0.24 -38.57 16 9 N -0.45 -25.30 3.03 -658.90 -1.99 -27.30 16 10 C 0.12 6.01 8.18 127.77 1.04 7.05 16 11 C -0.35 -21.10 9.54 84.04 0.80 -20.29 16 12 H 0.08 4.91 7.21 -2.91 -0.02 4.89 16 13 C 0.00 -0.04 5.46 84.92 0.46 0.42 16 14 N -0.89 -47.41 9.46 21.66 0.20 -47.21 16 15 Si 1.00 43.61 29.56 68.60 2.03 45.64 16 16 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 17 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 18 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 19 C -0.11 -3.97 4.75 -19.87 -0.09 -4.06 16 20 C -0.11 -3.67 9.32 22.27 0.21 -3.46 16 21 C -0.12 -3.28 10.05 22.27 0.22 -3.05 16 22 C -0.11 -2.42 10.05 22.27 0.22 -2.20 16 23 C -0.12 -2.87 10.05 22.27 0.22 -2.65 16 24 C -0.12 -3.61 8.58 22.27 0.19 -3.42 16 25 H 0.14 1.93 8.14 -2.39 -0.02 1.91 16 26 H 0.11 2.16 8.14 -2.39 -0.02 2.14 16 27 H 0.11 2.03 8.14 -2.39 -0.02 2.01 16 28 H 0.06 3.01 6.96 -2.39 -0.02 3.00 16 29 H 0.05 2.28 2.80 -2.39 -0.01 2.27 16 30 H 0.06 3.09 7.14 -2.39 -0.02 3.07 16 31 H 0.28 13.63 8.31 -92.71 -0.77 12.86 16 32 H 0.11 4.15 7.90 -2.91 -0.02 4.13 16 33 H 0.15 3.02 8.06 -2.91 -0.02 3.00 16 34 H 0.16 2.33 8.06 -2.92 -0.02 2.30 16 35 H 0.16 2.75 8.06 -2.91 -0.02 2.72 16 36 H 0.13 3.89 6.30 -2.91 -0.02 3.87 16 Total: -1.00 -79.32 308.73 6.79 -72.53 By element: Atomic # 1 Polarization: 19.30 SS G_CDS: 1.11 Total: 20.41 kcal Atomic # 6 Polarization: 7.49 SS G_CDS: 5.25 Total: 12.73 kcal Atomic # 7 Polarization: -72.72 SS G_CDS: -1.79 Total: -74.51 kcal Atomic # 8 Polarization: -77.00 SS G_CDS: 0.19 Total: -76.80 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.64 kcal Total: -79.32 6.79 -72.53 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001144915594.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.091 kcal (2) G-P(sol) polarization free energy of solvation -79.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds