Wall clock time and date at job start Mon Mar 30 2020 02:02:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35981 * 116.99961 * 2 1 4 4 C 1.38719 * 120.17484 * 359.97438 * 3 2 1 5 5 C 1.37909 * 120.29515 * 180.15444 * 4 3 2 6 6 C 1.39267 * 120.31352 * 0.04407 * 5 4 3 7 7 C 1.38861 * 118.96510 * 359.57850 * 6 5 4 8 8 C 1.37737 * 120.83923 * 0.59082 * 7 6 5 9 9 C 1.51653 * 107.05067 * 181.05329 * 7 6 5 10 10 C 1.54708 * 101.93839 * 15.36988 * 9 7 6 11 11 H 1.08999 * 110.74657 * 216.37321 * 10 9 7 12 12 C 1.50699 * 110.90653 * 93.09571 * 10 9 7 13 13 O 1.21295 * 119.99476 * 247.62439 * 12 10 9 14 14 N 1.34775 * 120.00103 * 67.62483 * 12 10 9 15 15 C 1.46492 * 120.00112 * 0.02562 * 14 12 10 16 16 C 1.37097 * 119.99566 * 179.97438 * 14 12 10 17 17 H 1.07999 * 120.00488 * 21.91604 * 16 14 12 18 18 C 1.38960 * 119.99850 * 201.91018 * 16 14 12 19 19 N 1.31415 * 119.99587 * 13.18324 * 18 16 14 20 20 Si 1.86793 * 119.99980 * 193.18325 * 18 16 14 21 21 H 1.48506 * 109.47442 * 59.99987 * 20 18 16 22 22 H 1.48501 * 109.47146 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.47392 * 299.99788 * 20 18 16 24 24 O 1.36243 * 129.81985 * 179.50457 * 6 5 4 25 25 H 1.09004 * 109.46851 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47477 * 300.00291 * 1 2 3 27 27 H 1.09003 * 109.46623 * 60.00324 * 1 2 3 28 28 H 1.08011 * 119.85397 * 0.17635 * 4 3 2 29 29 H 1.07996 * 119.84574 * 180.02562 * 5 4 3 30 30 H 1.08002 * 120.03139 * 179.65293 * 8 7 6 31 31 H 1.08999 * 110.93797 * 257.20953 * 9 7 6 32 32 H 1.09002 * 110.93813 * 133.52649 * 9 7 6 33 33 H 1.08994 * 109.47819 * 94.53477 * 15 14 12 34 34 H 1.09004 * 109.46970 * 214.53753 * 15 14 12 35 35 H 1.08998 * 109.47494 * 334.53108 * 15 14 12 36 36 H 0.96999 * 119.99209 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 1.2944 2.3773 -0.0005 5 6 1.9179 3.6074 -0.0037 6 6 3.3081 3.6908 -0.0074 7 6 4.0521 2.5184 0.0012 8 6 3.4320 1.2885 0.0009 9 6 5.5144 2.9199 0.0213 10 6 5.4312 4.4115 0.4231 11 1 6.1941 4.9938 -0.0937 12 6 5.5586 4.5742 1.9159 13 8 4.6099 4.9577 2.5672 14 7 6.7265 4.2936 2.5272 15 6 7.8724 3.8310 1.7404 16 6 6.8424 4.4421 3.8851 17 1 5.9593 4.4330 4.5067 18 6 8.0962 4.6043 4.4618 19 7 9.1369 4.8744 3.7062 20 14 8.3023 4.4384 6.3109 21 1 7.8855 3.0777 6.7354 22 1 9.7263 4.6556 6.6718 23 1 7.4588 5.4507 6.9959 24 8 4.1163 4.7876 -0.0200 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 0.2158 2.3213 0.0019 29 1 1.3254 4.5103 -0.0037 30 1 4.0235 0.3849 0.0020 31 1 5.9630 2.8069 -0.9657 32 1 6.0657 2.3460 0.7662 33 1 8.5029 4.6816 1.4820 34 1 8.4497 3.1152 2.3257 35 1 7.5171 3.3516 0.8283 36 1 10.0121 4.9880 4.1089 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001182350980.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:41 Heat of formation + Delta-G solvation = -54.723282 kcal Electronic energy + Delta-G solvation = -21528.799064 eV Core-core repulsion = 18172.974648 eV Total energy + Delta-G solvation = -3355.824416 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.09010 -39.41025 -37.90474 -35.95884 -34.64990 -32.68123 -31.52821 -29.81286 -28.99888 -27.05204 -26.25231 -25.07079 -23.34656 -22.05296 -21.29482 -19.46060 -17.79196 -17.07977 -16.92262 -16.46121 -16.32604 -15.70853 -15.11692 -14.94699 -14.16546 -14.11245 -13.82762 -13.54608 -13.24609 -13.04911 -12.54110 -12.42879 -12.30499 -12.16842 -11.84449 -11.61830 -11.38547 -11.27773 -11.01491 -10.82282 -10.56318 -10.43763 -10.34205 -10.23847 -9.07571 -8.79430 -8.42803 -7.74625 -7.42570 -6.35229 -3.91863 1.39049 1.61184 3.15534 3.21267 3.23000 3.27001 3.52643 3.77084 3.97323 4.10378 4.67318 4.70127 4.87033 4.93615 5.02053 5.06340 5.12063 5.19390 5.29474 5.36014 5.45792 5.67679 5.77472 5.88078 5.96626 6.03715 6.19372 6.25448 6.41462 6.55854 6.65042 6.78564 7.15701 7.27309 7.53196 7.55761 8.05920 8.43214 9.13354 9.34735 9.89494 10.67496 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.025752 B = 0.004577 C = 0.004340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.040989 B = 6116.509308 C = 6449.424889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.319 6.319 3 C 0.089 3.911 4 C -0.173 4.173 5 C -0.100 4.100 6 C 0.094 3.906 7 C -0.132 4.132 8 C -0.099 4.099 9 C -0.102 4.102 10 C 0.073 3.927 11 H 0.128 0.872 12 C 0.428 3.572 13 O -0.571 6.571 14 N -0.438 5.438 15 C 0.100 3.900 16 C -0.307 4.307 17 H 0.099 0.901 18 C 0.033 3.967 19 N -0.881 5.881 20 Si 0.928 3.072 21 H -0.273 1.273 22 H -0.283 1.283 23 H -0.272 1.272 24 O -0.279 6.279 25 H 0.096 0.904 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.132 0.868 29 H 0.130 0.870 30 H 0.131 0.869 31 H 0.097 0.903 32 H 0.103 0.897 33 H 0.064 0.936 34 H 0.068 0.932 35 H 0.033 0.967 36 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.937 -8.033 -9.968 15.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.233 6.233 3 C 0.044 3.956 4 C -0.192 4.192 5 C -0.119 4.119 6 C 0.048 3.952 7 C -0.133 4.133 8 C -0.118 4.118 9 C -0.139 4.139 10 C 0.014 3.986 11 H 0.146 0.854 12 C 0.215 3.785 13 O -0.454 6.454 14 N -0.159 5.159 15 C -0.044 4.044 16 C -0.435 4.435 17 H 0.116 0.884 18 C -0.171 4.171 19 N -0.520 5.520 20 Si 0.754 3.246 21 H -0.199 1.199 22 H -0.209 1.209 23 H -0.197 1.197 24 O -0.192 6.192 25 H 0.115 0.885 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.150 0.850 29 H 0.147 0.853 30 H 0.149 0.851 31 H 0.115 0.885 32 H 0.121 0.879 33 H 0.082 0.918 34 H 0.087 0.913 35 H 0.052 0.948 36 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -9.134 -7.762 -9.665 15.398 hybrid contribution 0.265 0.060 0.936 0.975 sum -8.869 -7.702 -8.728 14.635 Atomic orbital electron populations 1.22998 0.78825 1.03553 1.01243 1.86039 1.20950 1.26716 1.89592 1.18614 0.91842 0.84087 1.01008 1.20835 0.99701 0.91265 1.07391 1.19963 0.90676 0.97873 1.03404 1.19454 0.91911 0.86021 0.97788 1.20544 0.95658 0.93014 1.04083 1.19349 0.91180 0.96853 1.04390 1.21948 0.93203 0.95222 1.03574 1.23320 0.83990 0.95412 0.95925 0.85422 1.20140 0.85491 0.84789 0.88078 1.90552 1.38723 1.50632 1.65537 1.43533 1.09090 1.55856 1.07375 1.21750 0.89236 1.00307 0.93080 1.19623 0.94295 1.48481 0.81082 0.88354 1.25334 0.95344 0.96024 1.00387 1.69988 1.00323 1.45811 1.35904 0.85972 0.77177 0.79133 0.82296 1.19860 1.20873 1.19739 1.86878 1.20844 1.31173 1.80259 0.88541 0.92754 0.92868 0.85012 0.85255 0.85085 0.88458 0.87864 0.91753 0.91317 0.94820 0.92112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 9.82 101.05 0.99 1.24 16 2 O -0.32 -4.20 10.50 -19.68 -0.21 -4.41 16 3 C 0.09 1.32 6.69 -39.21 -0.26 1.06 16 4 C -0.17 -2.43 9.02 -39.52 -0.36 -2.79 16 5 C -0.10 -1.63 10.06 -39.32 -0.40 -2.02 16 6 C 0.09 1.76 6.87 -38.97 -0.27 1.49 16 7 C -0.13 -2.28 6.26 -104.10 -0.65 -2.94 16 8 C -0.10 -1.55 9.98 -39.57 -0.39 -1.95 16 9 C -0.10 -1.65 5.30 -26.51 -0.14 -1.79 16 10 C 0.07 1.43 3.15 -26.98 -0.08 1.35 16 11 H 0.13 2.15 8.02 -51.93 -0.42 1.73 16 12 C 0.43 10.73 6.93 -10.99 -0.08 10.66 16 13 O -0.57 -16.71 16.18 -13.52 -0.22 -16.93 16 14 N -0.44 -11.16 3.01 -122.20 -0.37 -11.53 16 15 C 0.10 2.13 8.11 59.84 0.49 2.61 16 16 C -0.31 -8.59 9.29 -14.93 -0.14 -8.72 16 17 H 0.10 2.91 7.40 -52.49 -0.39 2.52 16 18 C 0.03 0.85 5.10 -17.46 -0.09 0.77 16 19 N -0.88 -23.09 10.66 55.50 0.59 -22.50 16 20 Si 0.93 20.72 29.57 -169.99 -5.03 15.69 16 21 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 22 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 23 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 24 O -0.28 -5.71 10.42 -39.58 -0.41 -6.12 16 25 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.05 0.44 7.67 -51.93 -0.40 0.05 16 27 H 0.05 0.39 7.67 -51.93 -0.40 0.00 16 28 H 0.13 1.41 6.30 -52.48 -0.33 1.08 16 29 H 0.13 1.87 8.06 -52.49 -0.42 1.44 16 30 H 0.13 1.80 8.06 -52.49 -0.42 1.38 16 31 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 32 H 0.10 1.70 6.42 -51.93 -0.33 1.37 16 33 H 0.06 1.43 7.41 -51.93 -0.38 1.05 16 34 H 0.07 1.53 7.23 -51.93 -0.38 1.16 16 35 H 0.03 0.57 4.49 -51.93 -0.23 0.34 16 36 H 0.27 6.68 8.31 -40.82 -0.34 6.34 16 LS Contribution 301.56 15.07 4.54 4.54 Total: -1.00 -33.39 301.56 -6.56 -39.96 By element: Atomic # 1 Polarization: 6.41 SS G_CDS: -4.08 Total: 2.33 kcal Atomic # 6 Polarization: 0.35 SS G_CDS: -1.38 Total: -1.04 kcal Atomic # 7 Polarization: -34.25 SS G_CDS: 0.22 Total: -34.03 kcal Atomic # 8 Polarization: -26.62 SS G_CDS: -0.84 Total: -27.46 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.03 Total: 15.69 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -33.39 -6.56 -39.96 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182350980.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.767 kcal (2) G-P(sol) polarization free energy of solvation -33.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds