Wall clock time and date at job start Mon Mar 30 2020 02:02:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35981 * 116.99961 * 2 1 4 4 C 1.38719 * 120.17484 * 359.97438 * 3 2 1 5 5 C 1.37909 * 120.29515 * 180.15444 * 4 3 2 6 6 C 1.39267 * 120.31352 * 0.04407 * 5 4 3 7 7 C 1.38861 * 118.96510 * 359.57850 * 6 5 4 8 8 C 1.37737 * 120.83923 * 0.59082 * 7 6 5 9 9 C 1.51653 * 107.05067 * 181.05329 * 7 6 5 10 10 C 1.54708 * 101.93839 * 15.36988 * 9 7 6 11 11 H 1.08999 * 110.74657 * 216.37321 * 10 9 7 12 12 C 1.50699 * 110.90653 * 93.09571 * 10 9 7 13 13 O 1.21295 * 119.99476 * 247.62439 * 12 10 9 14 14 N 1.34775 * 120.00103 * 67.62483 * 12 10 9 15 15 C 1.46492 * 120.00112 * 0.02562 * 14 12 10 16 16 C 1.37097 * 119.99566 * 179.97438 * 14 12 10 17 17 H 1.07999 * 120.00488 * 21.91604 * 16 14 12 18 18 C 1.38960 * 119.99850 * 201.91018 * 16 14 12 19 19 N 1.31415 * 119.99587 * 13.18324 * 18 16 14 20 20 Si 1.86793 * 119.99980 * 193.18325 * 18 16 14 21 21 H 1.48506 * 109.47442 * 59.99987 * 20 18 16 22 22 H 1.48501 * 109.47146 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.47392 * 299.99788 * 20 18 16 24 24 O 1.36243 * 129.81985 * 179.50457 * 6 5 4 25 25 H 1.09004 * 109.46851 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47477 * 300.00291 * 1 2 3 27 27 H 1.09003 * 109.46623 * 60.00324 * 1 2 3 28 28 H 1.08011 * 119.85397 * 0.17635 * 4 3 2 29 29 H 1.07996 * 119.84574 * 180.02562 * 5 4 3 30 30 H 1.08002 * 120.03139 * 179.65293 * 8 7 6 31 31 H 1.08999 * 110.93797 * 257.20953 * 9 7 6 32 32 H 1.09002 * 110.93813 * 133.52649 * 9 7 6 33 33 H 1.08994 * 109.47819 * 94.53477 * 15 14 12 34 34 H 1.09004 * 109.46970 * 214.53753 * 15 14 12 35 35 H 1.08998 * 109.47494 * 334.53108 * 15 14 12 36 36 H 0.96999 * 119.99209 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 1.2944 2.3773 -0.0005 5 6 1.9179 3.6074 -0.0037 6 6 3.3081 3.6908 -0.0074 7 6 4.0521 2.5184 0.0012 8 6 3.4320 1.2885 0.0009 9 6 5.5144 2.9199 0.0213 10 6 5.4312 4.4115 0.4231 11 1 6.1941 4.9938 -0.0937 12 6 5.5586 4.5742 1.9159 13 8 4.6099 4.9577 2.5672 14 7 6.7265 4.2936 2.5272 15 6 7.8724 3.8310 1.7404 16 6 6.8424 4.4421 3.8851 17 1 5.9593 4.4330 4.5067 18 6 8.0962 4.6043 4.4618 19 7 9.1369 4.8744 3.7062 20 14 8.3023 4.4384 6.3109 21 1 7.8855 3.0777 6.7354 22 1 9.7263 4.6556 6.6718 23 1 7.4588 5.4507 6.9959 24 8 4.1163 4.7876 -0.0200 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 0.2158 2.3213 0.0019 29 1 1.3254 4.5103 -0.0037 30 1 4.0235 0.3849 0.0020 31 1 5.9630 2.8069 -0.9657 32 1 6.0657 2.3460 0.7662 33 1 8.5029 4.6816 1.4820 34 1 8.4497 3.1152 2.3257 35 1 7.5171 3.3516 0.8283 36 1 10.0121 4.9880 4.1089 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001182350980.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:41 Heat of formation + Delta-G solvation = -76.438736 kcal Electronic energy + Delta-G solvation = -21529.740716 eV Core-core repulsion = 18172.974648 eV Total energy + Delta-G solvation = -3356.766068 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.46227 -40.61875 -39.61260 -37.21286 -36.62584 -34.23615 -33.27718 -31.02550 -30.34090 -28.16424 -27.82369 -26.83368 -24.89641 -23.34290 -22.49937 -21.16953 -19.05175 -18.87905 -18.38252 -17.98661 -17.67063 -17.01383 -16.58223 -16.24956 -15.94745 -15.68751 -15.33911 -15.06666 -14.34608 -14.28485 -13.97488 -13.87962 -13.75024 -13.54400 -13.28986 -13.16323 -12.82302 -12.78325 -12.61804 -12.44939 -12.29185 -12.14526 -11.67955 -11.52387 -11.06588 -10.35678 -9.92489 -9.74931 -8.71057 -8.35583 -6.02515 0.20342 0.37092 1.35812 1.39792 1.49993 1.83901 2.13315 2.25785 2.42540 2.71092 2.94657 3.04453 3.40724 3.56920 3.82484 3.85790 4.00617 4.12701 4.27211 4.41377 4.44629 4.55200 4.56463 4.65744 4.72087 4.76826 4.83771 5.01255 5.05947 5.24503 5.36845 5.38646 5.41108 5.43205 5.97449 6.07455 6.43047 6.46569 7.11273 7.37879 7.93529 8.63887 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.025752 B = 0.004577 C = 0.004340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.040989 B = 6116.509308 C = 6449.424889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.330 6.330 3 C 0.093 3.907 4 C -0.169 4.169 5 C -0.110 4.110 6 C 0.048 3.952 7 C -0.142 4.142 8 C -0.112 4.112 9 C -0.093 4.093 10 C 0.077 3.923 11 H 0.156 0.844 12 C 0.415 3.585 13 O -0.628 6.628 14 N -0.449 5.449 15 C 0.107 3.893 16 C -0.350 4.350 17 H 0.067 0.933 18 C 0.005 3.995 19 N -0.889 5.889 20 Si 0.988 3.012 21 H -0.267 1.267 22 H -0.266 1.266 23 H -0.279 1.279 24 O -0.300 6.300 25 H 0.122 0.878 26 H 0.060 0.940 27 H 0.069 0.931 28 H 0.167 0.833 29 H 0.139 0.861 30 H 0.148 0.852 31 H 0.142 0.858 32 H 0.099 0.901 33 H 0.054 0.946 34 H 0.055 0.945 35 H 0.081 0.919 36 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.024 -9.658 -10.889 17.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.244 6.244 3 C 0.048 3.952 4 C -0.187 4.187 5 C -0.129 4.129 6 C 0.003 3.997 7 C -0.143 4.143 8 C -0.131 4.131 9 C -0.129 4.129 10 C 0.017 3.983 11 H 0.173 0.827 12 C 0.204 3.796 13 O -0.515 6.515 14 N -0.168 5.168 15 C -0.035 4.035 16 C -0.478 4.478 17 H 0.085 0.915 18 C -0.198 4.198 19 N -0.527 5.527 20 Si 0.811 3.189 21 H -0.192 1.192 22 H -0.190 1.190 23 H -0.205 1.205 24 O -0.213 6.213 25 H 0.140 0.860 26 H 0.078 0.922 27 H 0.088 0.912 28 H 0.184 0.816 29 H 0.157 0.843 30 H 0.166 0.834 31 H 0.160 0.840 32 H 0.117 0.883 33 H 0.073 0.927 34 H 0.074 0.926 35 H 0.099 0.901 36 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -9.197 -9.411 -10.619 16.909 hybrid contribution 0.169 0.507 1.214 1.326 sum -9.028 -8.904 -9.406 15.788 Atomic orbital electron populations 1.23375 0.76375 1.05712 1.02307 1.86041 1.23473 1.25747 1.89131 1.18788 0.91909 0.85008 0.99498 1.21174 1.01408 0.90134 1.05986 1.20312 0.90180 0.99327 1.03046 1.19887 0.93005 0.86148 1.00661 1.20731 0.96081 0.93158 1.04303 1.19613 0.92087 0.96905 1.04465 1.21973 0.93106 0.92255 1.05602 1.23327 0.84768 0.98459 0.91707 0.82682 1.21210 0.84451 0.83366 0.90581 1.90494 1.40483 1.52946 1.67604 1.43780 1.10301 1.55671 1.07053 1.21770 0.87932 0.99714 0.94107 1.19547 0.94077 1.51498 0.82638 0.91535 1.26037 0.94497 0.94818 1.04467 1.70046 1.00612 1.44661 1.37401 0.85086 0.77716 0.78973 0.77101 1.19241 1.18975 1.20467 1.86837 1.21405 1.32574 1.80485 0.86033 0.92157 0.91238 0.81604 0.84315 0.83427 0.84043 0.88262 0.92737 0.92634 0.90127 0.91410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.82 113.37 1.11 1.35 16 2 O -0.33 -7.85 10.50 -93.34 -0.98 -8.83 16 3 C 0.09 2.59 6.69 22.51 0.15 2.74 16 4 C -0.17 -4.44 9.02 22.31 0.20 -4.24 16 5 C -0.11 -3.53 10.06 22.44 0.23 -3.30 16 6 C 0.05 1.80 6.87 22.67 0.16 1.95 16 7 C -0.14 -4.78 6.26 -19.53 -0.12 -4.91 16 8 C -0.11 -3.36 9.98 22.28 0.22 -3.14 16 9 C -0.09 -2.83 5.30 30.73 0.16 -2.66 16 10 C 0.08 2.97 3.15 30.43 0.10 3.07 16 11 H 0.16 5.00 8.02 -2.39 -0.02 4.98 16 12 C 0.42 21.40 6.93 87.66 0.61 22.01 16 13 O -0.63 -38.62 16.18 15.15 0.25 -38.38 16 14 N -0.45 -23.35 3.01 -658.91 -1.99 -25.34 16 15 C 0.11 4.51 8.11 127.77 1.04 5.55 16 16 C -0.35 -20.23 9.29 84.04 0.78 -19.45 16 17 H 0.07 4.18 7.40 -2.91 -0.02 4.16 16 18 C 0.00 0.24 5.10 84.93 0.43 0.68 16 19 N -0.89 -46.29 10.66 21.67 0.23 -46.06 16 20 Si 0.99 42.53 29.57 68.60 2.03 44.56 16 21 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 22 H -0.27 -10.60 7.11 99.48 0.71 -9.90 16 23 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 24 O -0.30 -12.43 10.42 -78.10 -0.81 -13.24 16 25 H 0.12 1.12 8.14 -2.39 -0.02 1.10 16 26 H 0.06 0.80 7.67 -2.39 -0.02 0.78 16 27 H 0.07 0.78 7.67 -2.39 -0.02 0.76 16 28 H 0.17 3.06 6.30 -2.91 -0.02 3.04 16 29 H 0.14 4.00 8.06 -2.91 -0.02 3.97 16 30 H 0.15 3.78 8.06 -2.91 -0.02 3.76 16 31 H 0.14 3.06 8.14 -2.39 -0.02 3.04 16 32 H 0.10 3.11 6.42 -2.39 -0.02 3.09 16 33 H 0.05 2.39 7.41 -2.39 -0.02 2.37 16 34 H 0.05 2.46 7.23 -2.39 -0.02 2.44 16 35 H 0.08 2.58 4.49 -2.39 -0.01 2.57 16 36 H 0.28 13.42 8.31 -92.71 -0.77 12.65 16 Total: -1.00 -75.82 301.56 4.90 -70.93 By element: Atomic # 1 Polarization: 15.62 SS G_CDS: 1.11 Total: 16.72 kcal Atomic # 6 Polarization: -5.42 SS G_CDS: 5.06 Total: -0.36 kcal Atomic # 7 Polarization: -69.65 SS G_CDS: -1.75 Total: -71.40 kcal Atomic # 8 Polarization: -58.90 SS G_CDS: -1.55 Total: -60.45 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 2.03 Total: 44.56 kcal Total: -75.82 4.90 -70.93 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182350980.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.511 kcal (2) G-P(sol) polarization free energy of solvation -75.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds