Wall clock time and date at job start Mon Mar 30 2020 01:56:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45199 * 109.47165 * 2 1 4 4 C 1.34674 * 116.99944 * 179.97438 * 3 2 1 5 5 O 1.21355 * 120.00105 * 359.97438 * 4 3 2 6 6 C 1.48734 * 120.00036 * 180.02562 * 4 3 2 7 7 O 1.21521 * 119.99779 * 5.13903 * 6 4 3 8 8 N 1.34776 * 120.00092 * 185.14690 * 6 4 3 9 9 C 1.36018 * 120.00113 * 4.66303 * 8 6 4 10 10 H 1.08004 * 119.99562 * 310.59175 * 9 8 6 11 11 C 1.39661 * 120.00354 * 130.58828 * 9 8 6 12 12 N 1.30973 * 119.99786 * 4.22662 * 11 9 8 13 13 Si 1.86793 * 120.00163 * 184.22450 * 11 9 8 14 14 H 1.48506 * 109.47440 * 90.00228 * 13 11 9 15 15 H 1.48504 * 109.47464 * 210.00165 * 13 11 9 16 16 H 1.48502 * 109.47422 * 330.00080 * 13 11 9 17 17 C 1.46504 * 120.00053 * 184.65758 * 8 6 4 18 18 C 1.50698 * 109.46570 * 94.62890 * 17 8 6 19 19 C 1.38236 * 120.00282 * 85.08653 * 18 17 8 20 20 C 1.38233 * 120.00443 * 179.97438 * 19 18 17 21 21 C 1.38238 * 119.99694 * 359.97438 * 20 19 18 22 22 C 1.38234 * 120.00164 * 0.27698 * 21 20 19 23 23 C 1.38236 * 119.99950 * 359.50898 * 22 21 20 24 24 H 1.09007 * 109.47460 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47385 * 300.00076 * 1 2 3 26 26 H 1.09001 * 109.47240 * 60.00282 * 1 2 3 27 27 H 1.08998 * 109.46720 * 239.99639 * 2 1 3 28 28 H 1.09001 * 109.46517 * 119.99895 * 2 1 3 29 29 H 0.96998 * 119.99738 * 179.97438 * 12 11 9 30 30 H 1.08997 * 109.46994 * 334.63152 * 17 8 6 31 31 H 1.09001 * 109.47138 * 214.62940 * 17 8 6 32 32 H 1.08003 * 119.99417 * 359.97259 * 19 18 17 33 33 H 1.08001 * 120.00283 * 179.97438 * 20 19 18 34 34 H 1.07996 * 119.99755 * 180.02562 * 21 20 19 35 35 H 1.08001 * 120.00025 * 179.72685 * 22 21 20 36 36 H 1.08003 * 120.00464 * 180.27515 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3491 1.5454 0.0005 5 8 4.0884 0.5830 0.0015 6 6 3.9177 2.9198 0.0011 7 8 3.1813 3.8818 0.0954 8 7 5.2495 3.0982 -0.1030 9 6 6.0653 2.0285 -0.3039 10 1 5.9713 1.1528 0.3213 11 6 7.0244 2.0625 -1.3186 12 7 7.1947 3.1539 -2.0224 13 14 8.0643 0.5516 -1.6718 14 1 7.3824 -0.2928 -2.6855 15 1 9.3904 0.9734 -2.1903 16 1 8.2470 -0.2273 -0.4207 17 6 5.8185 4.4443 0.0000 18 6 6.2501 4.6996 1.4211 19 6 7.4971 4.2851 1.8499 20 6 7.8932 4.5198 3.1533 21 6 7.0424 5.1696 4.0279 22 6 5.7932 5.5795 3.6006 23 6 5.3989 5.3487 2.2959 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.8932 -0.5139 -0.8900 28 1 1.8932 -0.5138 0.8900 29 1 7.8610 3.1776 -2.7269 30 1 5.0675 5.1793 -0.2893 31 1 6.6807 4.5259 -0.6618 32 1 8.1620 3.7778 1.1665 33 1 8.8674 4.1956 3.4884 34 1 7.3520 5.3533 5.0460 35 1 5.1268 6.0832 4.2851 36 1 4.4247 5.6729 1.9608 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001183249758.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:08 Heat of formation + Delta-G solvation = -81.912116 kcal Electronic energy + Delta-G solvation = -21648.911697 eV Core-core repulsion = 18291.908285 eV Total energy + Delta-G solvation = -3357.003412 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.97619 -38.84127 -37.72540 -35.99172 -34.92119 -32.04111 -31.35700 -30.80567 -30.30108 -26.35428 -25.40645 -23.78914 -22.11201 -21.94128 -20.71844 -19.50509 -18.25519 -16.71116 -16.34723 -16.08225 -15.64489 -14.97104 -14.85110 -14.55683 -14.31853 -14.03354 -13.66157 -13.16262 -12.87187 -12.82490 -12.58141 -12.23051 -12.07215 -11.56968 -11.50688 -11.45295 -11.29428 -11.22241 -10.84215 -10.64394 -10.38978 -10.24654 -10.07442 -9.97809 -9.28337 -8.61858 -8.34762 -8.13248 -7.63282 -6.47387 -4.28761 1.87174 1.98377 2.26024 2.97138 3.12983 3.19278 3.24551 4.04935 4.19154 4.36084 4.88105 4.94584 5.14813 5.23088 5.41099 5.45997 5.49088 5.55519 5.66522 5.82842 5.93896 5.95805 6.08949 6.12561 6.15880 6.40139 6.57511 6.70694 6.89603 7.01092 7.04144 7.12901 7.37417 7.49877 7.60559 7.73856 8.11669 8.51662 8.89228 9.17072 9.60462 10.49545 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.012363 B = 0.007820 C = 0.005460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2264.315991 B = 3579.598567 C = 5126.567115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.058 3.942 3 O -0.346 6.346 4 C 0.454 3.546 5 O -0.471 6.471 6 C 0.474 3.526 7 O -0.571 6.571 8 N -0.382 5.382 9 C -0.331 4.331 10 H 0.112 0.888 11 C 0.050 3.950 12 N -0.862 5.862 13 Si 0.927 3.073 14 H -0.274 1.274 15 H -0.282 1.282 16 H -0.266 1.266 17 C 0.132 3.868 18 C -0.081 4.081 19 C -0.088 4.088 20 C -0.132 4.132 21 C -0.132 4.132 22 C -0.133 4.133 23 C -0.108 4.108 24 H 0.074 0.926 25 H 0.065 0.935 26 H 0.065 0.935 27 H 0.067 0.933 28 H 0.065 0.935 29 H 0.275 0.725 30 H 0.071 0.929 31 H 0.135 0.865 32 H 0.126 0.874 33 H 0.114 0.886 34 H 0.111 0.889 35 H 0.113 0.887 36 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.395 -1.054 5.393 5.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.017 4.017 3 O -0.262 6.262 4 C 0.293 3.707 5 O -0.355 6.355 6 C 0.259 3.741 7 O -0.455 6.455 8 N -0.101 5.101 9 C -0.460 4.460 10 H 0.129 0.871 11 C -0.157 4.157 12 N -0.498 5.498 13 Si 0.752 3.248 14 H -0.200 1.200 15 H -0.208 1.208 16 H -0.190 1.190 17 C 0.011 3.989 18 C -0.082 4.082 19 C -0.107 4.107 20 C -0.151 4.151 21 C -0.151 4.151 22 C -0.151 4.151 23 C -0.127 4.127 24 H 0.093 0.907 25 H 0.084 0.916 26 H 0.084 0.916 27 H 0.085 0.915 28 H 0.084 0.916 29 H 0.086 0.914 30 H 0.089 0.911 31 H 0.152 0.848 32 H 0.144 0.856 33 H 0.132 0.868 34 H 0.129 0.871 35 H 0.131 0.869 36 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -2.424 -0.840 5.263 5.855 hybrid contribution 0.581 -1.055 -0.205 1.222 sum -1.843 -1.895 5.058 5.707 Atomic orbital electron populations 1.21769 0.93098 1.02300 1.03475 1.22938 0.95026 0.81482 1.02219 1.86689 1.24362 1.30849 1.84325 1.23777 0.80322 0.92173 0.74386 1.90759 1.59358 1.43108 1.42266 1.18836 0.83937 0.85941 0.85365 1.90653 1.58802 1.40595 1.55488 1.42972 1.02330 1.07432 1.57359 1.20038 1.14756 0.95465 1.15717 0.87093 1.25726 0.97843 0.97702 0.94459 1.69411 1.33415 1.26573 1.20450 0.85924 0.78229 0.81257 0.79349 1.19999 1.20792 1.18993 1.20927 1.01853 0.84075 0.92083 1.20506 0.93860 0.96433 0.97387 1.21169 0.96336 0.97631 0.95554 1.21086 0.99502 1.00284 0.94185 1.20991 0.94747 1.00302 0.99026 1.21029 0.96475 1.01534 0.96033 1.21256 0.99394 0.98697 0.93324 0.90719 0.91618 0.91561 0.91508 0.91647 0.91405 0.91062 0.84787 0.85633 0.86811 0.87063 0.86897 0.86032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 10.29 37.16 0.38 -1.38 16 2 C 0.06 0.91 6.19 37.16 0.23 1.14 16 3 O -0.35 -7.20 10.09 -45.52 -0.46 -7.66 16 4 C 0.45 10.76 7.89 35.07 0.28 11.04 16 5 O -0.47 -11.47 13.30 -19.15 -0.25 -11.72 16 6 C 0.47 12.09 7.67 -11.92 -0.09 12.00 16 7 O -0.57 -15.09 16.46 -8.11 -0.13 -15.22 16 8 N -0.38 -9.64 2.46 -116.90 -0.29 -9.93 16 9 C -0.33 -8.49 7.68 -15.16 -0.12 -8.61 16 10 H 0.11 2.95 6.04 -52.48 -0.32 2.63 16 11 C 0.05 1.23 5.41 -17.39 -0.09 1.14 16 12 N -0.86 -21.64 10.93 55.53 0.61 -21.03 16 13 Si 0.93 19.84 29.56 -169.99 -5.02 14.81 16 14 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 15 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 16 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 17 C 0.13 3.06 5.27 -5.19 -0.03 3.04 16 18 C -0.08 -1.68 5.43 -104.62 -0.57 -2.25 16 19 C -0.09 -1.71 9.72 -39.58 -0.38 -2.10 16 20 C -0.13 -2.20 10.05 -39.58 -0.40 -2.60 16 21 C -0.13 -2.06 10.05 -39.58 -0.40 -2.46 16 22 C -0.13 -2.19 10.05 -39.58 -0.40 -2.58 16 23 C -0.11 -2.07 9.68 -39.58 -0.38 -2.46 16 24 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 27 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.27 6.50 8.30 -40.82 -0.34 6.16 16 30 H 0.07 1.67 7.14 -51.93 -0.37 1.30 16 31 H 0.13 3.25 5.37 -51.93 -0.28 2.97 16 32 H 0.13 2.50 8.06 -52.48 -0.42 2.07 16 33 H 0.11 1.59 8.06 -52.49 -0.42 1.16 16 34 H 0.11 1.40 8.06 -52.49 -0.42 0.98 16 35 H 0.11 1.56 8.06 -52.49 -0.42 1.13 16 36 H 0.12 2.35 8.06 -52.48 -0.42 1.93 16 LS Contribution 317.34 15.07 4.78 4.78 Total: -1.00 -28.84 317.34 -7.07 -35.91 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: -4.33 Total: 6.13 kcal Atomic # 6 Polarization: 5.89 SS G_CDS: -1.97 Total: 3.92 kcal Atomic # 7 Polarization: -31.28 SS G_CDS: 0.32 Total: -30.96 kcal Atomic # 8 Polarization: -33.75 SS G_CDS: -0.85 Total: -34.60 kcal Atomic # 14 Polarization: 19.84 SS G_CDS: -5.02 Total: 14.81 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -28.84 -7.07 -35.91 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001183249758.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.001 kcal (2) G-P(sol) polarization free energy of solvation -28.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds