Wall clock time and date at job start Mon Mar 30 2020 01:56:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45199 * 109.47165 * 2 1 4 4 C 1.34674 * 116.99944 * 179.97438 * 3 2 1 5 5 O 1.21355 * 120.00105 * 359.97438 * 4 3 2 6 6 C 1.48734 * 120.00036 * 180.02562 * 4 3 2 7 7 O 1.21521 * 119.99779 * 5.13903 * 6 4 3 8 8 N 1.34776 * 120.00092 * 185.14690 * 6 4 3 9 9 C 1.36018 * 120.00113 * 4.66303 * 8 6 4 10 10 H 1.08004 * 119.99562 * 310.59175 * 9 8 6 11 11 C 1.39661 * 120.00354 * 130.58828 * 9 8 6 12 12 N 1.30973 * 119.99786 * 4.22662 * 11 9 8 13 13 Si 1.86793 * 120.00163 * 184.22450 * 11 9 8 14 14 H 1.48506 * 109.47440 * 90.00228 * 13 11 9 15 15 H 1.48504 * 109.47464 * 210.00165 * 13 11 9 16 16 H 1.48502 * 109.47422 * 330.00080 * 13 11 9 17 17 C 1.46504 * 120.00053 * 184.65758 * 8 6 4 18 18 C 1.50698 * 109.46570 * 94.62890 * 17 8 6 19 19 C 1.38236 * 120.00282 * 85.08653 * 18 17 8 20 20 C 1.38233 * 120.00443 * 179.97438 * 19 18 17 21 21 C 1.38238 * 119.99694 * 359.97438 * 20 19 18 22 22 C 1.38234 * 120.00164 * 0.27698 * 21 20 19 23 23 C 1.38236 * 119.99950 * 359.50898 * 22 21 20 24 24 H 1.09007 * 109.47460 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47385 * 300.00076 * 1 2 3 26 26 H 1.09001 * 109.47240 * 60.00282 * 1 2 3 27 27 H 1.08998 * 109.46720 * 239.99639 * 2 1 3 28 28 H 1.09001 * 109.46517 * 119.99895 * 2 1 3 29 29 H 0.96998 * 119.99738 * 179.97438 * 12 11 9 30 30 H 1.08997 * 109.46994 * 334.63152 * 17 8 6 31 31 H 1.09001 * 109.47138 * 214.62940 * 17 8 6 32 32 H 1.08003 * 119.99417 * 359.97259 * 19 18 17 33 33 H 1.08001 * 120.00283 * 179.97438 * 20 19 18 34 34 H 1.07996 * 119.99755 * 180.02562 * 21 20 19 35 35 H 1.08001 * 120.00025 * 179.72685 * 22 21 20 36 36 H 1.08003 * 120.00464 * 180.27515 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3491 1.5454 0.0005 5 8 4.0884 0.5830 0.0015 6 6 3.9177 2.9198 0.0011 7 8 3.1813 3.8818 0.0954 8 7 5.2495 3.0982 -0.1030 9 6 6.0653 2.0285 -0.3039 10 1 5.9713 1.1528 0.3213 11 6 7.0244 2.0625 -1.3186 12 7 7.1947 3.1539 -2.0224 13 14 8.0643 0.5516 -1.6718 14 1 7.3824 -0.2928 -2.6855 15 1 9.3904 0.9734 -2.1903 16 1 8.2470 -0.2273 -0.4207 17 6 5.8185 4.4443 0.0000 18 6 6.2501 4.6996 1.4211 19 6 7.4971 4.2851 1.8499 20 6 7.8932 4.5198 3.1533 21 6 7.0424 5.1696 4.0279 22 6 5.7932 5.5795 3.6006 23 6 5.3989 5.3487 2.2959 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.8932 -0.5139 -0.8900 28 1 1.8932 -0.5138 0.8900 29 1 7.8610 3.1776 -2.7269 30 1 5.0675 5.1793 -0.2893 31 1 6.6807 4.5259 -0.6618 32 1 8.1620 3.7778 1.1665 33 1 8.8674 4.1956 3.4884 34 1 7.3520 5.3533 5.0460 35 1 5.1268 6.0832 4.2851 36 1 4.4247 5.6729 1.9608 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001183249758.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:08 Heat of formation + Delta-G solvation = -96.509072 kcal Electronic energy + Delta-G solvation = -21649.544668 eV Core-core repulsion = 18291.908285 eV Total energy + Delta-G solvation = -3357.636384 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.78751 -40.43905 -39.39215 -37.78539 -36.77632 -33.89361 -32.56448 -32.44546 -31.69087 -28.06166 -27.32652 -25.39809 -23.48547 -23.34332 -22.24693 -21.35742 -20.08315 -18.48247 -17.98033 -17.70597 -17.32747 -16.74410 -16.68006 -16.07335 -15.84043 -15.61151 -15.33455 -14.70819 -14.50595 -14.19901 -13.85469 -13.72010 -13.57308 -13.32617 -13.22018 -12.99944 -12.86400 -12.56902 -12.52300 -12.25021 -12.02493 -11.78455 -11.75627 -11.51256 -11.20857 -10.50229 -9.74100 -9.60431 -9.58105 -8.38501 -6.27437 0.30351 0.49801 0.58638 1.30780 1.42031 1.44662 1.55501 2.23289 2.30977 2.86256 2.99583 3.32651 3.89205 4.00198 4.06910 4.09631 4.11395 4.25041 4.32817 4.37388 4.52539 4.73529 4.77858 4.85747 4.91578 5.05784 5.13937 5.22550 5.27465 5.32930 5.55503 5.64521 5.66385 5.76293 5.92231 6.19643 6.24812 6.61637 6.93637 7.22794 7.65422 8.58381 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.012363 B = 0.007820 C = 0.005460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2264.315991 B = 3579.598567 C = 5126.567115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.046 3.954 3 O -0.353 6.353 4 C 0.458 3.542 5 O -0.484 6.484 6 C 0.452 3.548 7 O -0.594 6.594 8 N -0.383 5.383 9 C -0.346 4.346 10 H 0.100 0.900 11 C 0.018 3.982 12 N -0.880 5.880 13 Si 0.985 3.015 14 H -0.278 1.278 15 H -0.268 1.268 16 H -0.263 1.263 17 C 0.136 3.864 18 C -0.106 4.106 19 C -0.105 4.105 20 C -0.128 4.128 21 C -0.120 4.120 22 C -0.128 4.128 23 C -0.126 4.126 24 H 0.110 0.890 25 H 0.067 0.933 26 H 0.065 0.935 27 H 0.069 0.931 28 H 0.073 0.927 29 H 0.281 0.719 30 H 0.055 0.945 31 H 0.121 0.879 32 H 0.111 0.889 33 H 0.145 0.855 34 H 0.155 0.845 35 H 0.145 0.855 36 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.824 -1.915 7.111 7.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.028 4.028 3 O -0.269 6.269 4 C 0.298 3.702 5 O -0.370 6.370 6 C 0.239 3.761 7 O -0.481 6.481 8 N -0.101 5.101 9 C -0.475 4.475 10 H 0.118 0.882 11 C -0.188 4.188 12 N -0.516 5.516 13 Si 0.808 3.192 14 H -0.204 1.204 15 H -0.192 1.192 16 H -0.187 1.187 17 C 0.015 3.985 18 C -0.107 4.107 19 C -0.124 4.124 20 C -0.146 4.146 21 C -0.138 4.138 22 C -0.145 4.145 23 C -0.144 4.144 24 H 0.129 0.871 25 H 0.086 0.914 26 H 0.084 0.916 27 H 0.088 0.912 28 H 0.091 0.909 29 H 0.092 0.908 30 H 0.074 0.926 31 H 0.139 0.861 32 H 0.129 0.871 33 H 0.163 0.837 34 H 0.172 0.828 35 H 0.163 0.837 36 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -1.859 -1.692 6.983 7.421 hybrid contribution 0.368 -0.766 -0.699 1.100 sum -1.491 -2.458 6.284 6.910 Atomic orbital electron populations 1.21820 0.89738 1.04667 1.03594 1.23456 0.97603 0.78939 1.02770 1.86665 1.22446 1.34199 1.83608 1.23351 0.81367 0.91179 0.74348 1.90731 1.59955 1.43137 1.43149 1.19274 0.84130 0.86904 0.85825 1.90610 1.59202 1.41435 1.56863 1.43213 1.02463 1.08058 1.56400 1.20019 1.15466 0.95463 1.16543 0.88222 1.26424 0.98391 1.00089 0.93874 1.69502 1.33755 1.27809 1.20554 0.85056 0.77219 0.77926 0.78988 1.20416 1.19214 1.18658 1.20813 1.00503 0.83012 0.94138 1.20319 0.95279 0.98807 0.96248 1.21143 0.95678 0.98531 0.97044 1.21440 1.00991 0.99326 0.92797 1.21477 0.93620 0.98065 1.00653 1.21394 0.97518 1.00671 0.94966 1.21259 0.98858 0.99556 0.94768 0.87119 0.91376 0.91583 0.91224 0.90900 0.90831 0.92641 0.86150 0.87092 0.83675 0.82753 0.83738 0.87356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.04 10.29 71.98 0.74 -2.30 16 2 C 0.05 1.39 6.19 71.98 0.45 1.84 16 3 O -0.35 -14.86 10.09 -50.96 -0.51 -15.38 16 4 C 0.46 22.29 7.89 70.63 0.56 22.85 16 5 O -0.48 -24.04 13.30 20.30 0.27 -23.77 16 6 C 0.45 24.12 7.67 87.05 0.67 24.78 16 7 O -0.59 -32.94 16.46 9.09 0.15 -32.79 16 8 N -0.38 -20.20 2.46 -642.05 -1.58 -21.78 16 9 C -0.35 -18.29 7.68 84.39 0.65 -17.64 16 10 H 0.10 5.45 6.04 -2.91 -0.02 5.43 16 11 C 0.02 0.88 5.41 85.16 0.46 1.34 16 12 N -0.88 -45.09 10.93 21.78 0.24 -44.85 16 13 Si 0.99 40.55 29.56 68.60 2.03 42.58 16 14 H -0.28 -11.62 7.11 99.48 0.71 -10.91 16 15 H -0.27 -10.31 7.11 99.48 0.71 -9.60 16 16 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 17 C 0.14 6.70 5.27 85.63 0.45 7.15 16 18 C -0.11 -4.53 5.43 -19.86 -0.11 -4.64 16 19 C -0.11 -4.09 9.72 22.27 0.22 -3.88 16 20 C -0.13 -3.92 10.05 22.27 0.22 -3.70 16 21 C -0.12 -3.29 10.05 22.27 0.22 -3.07 16 22 C -0.13 -3.91 10.05 22.27 0.22 -3.69 16 23 C -0.13 -4.88 9.68 22.27 0.22 -4.66 16 24 H 0.11 1.62 8.14 -2.38 -0.02 1.60 16 25 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 26 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 27 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 28 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 29 H 0.28 13.39 8.30 -92.71 -0.77 12.62 16 30 H 0.06 2.80 7.14 -2.39 -0.02 2.78 16 31 H 0.12 6.18 5.37 -2.39 -0.01 6.17 16 32 H 0.11 4.54 8.06 -2.91 -0.02 4.52 16 33 H 0.15 3.50 8.06 -2.91 -0.02 3.48 16 34 H 0.15 2.97 8.06 -2.91 -0.02 2.94 16 35 H 0.14 3.48 8.06 -2.91 -0.02 3.45 16 36 H 0.11 4.39 8.06 -2.91 -0.02 4.37 16 Total: -1.00 -64.30 317.34 6.65 -57.65 By element: Atomic # 1 Polarization: 22.85 SS G_CDS: 1.09 Total: 23.94 kcal Atomic # 6 Polarization: 9.43 SS G_CDS: 4.97 Total: 14.40 kcal Atomic # 7 Polarization: -65.29 SS G_CDS: -1.34 Total: -66.64 kcal Atomic # 8 Polarization: -71.84 SS G_CDS: -0.09 Total: -71.93 kcal Atomic # 14 Polarization: 40.55 SS G_CDS: 2.03 Total: 42.58 kcal Total: -64.30 6.65 -57.65 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001183249758.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.858 kcal (2) G-P(sol) polarization free energy of solvation -64.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds