Wall clock time and date at job start Mon Mar 30 2020 02:00:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46905 * 110.99738 * 2 1 4 4 C 1.50701 * 109.47105 * 66.04419 * 3 2 1 5 5 H 1.08005 * 119.99916 * 0.02562 * 4 3 2 6 6 C 1.37876 * 119.99947 * 179.97438 * 4 3 2 7 7 N 1.31514 * 119.99885 * 0.02562 * 6 4 3 8 8 Si 1.86802 * 119.99832 * 180.02562 * 6 4 3 9 9 H 1.48496 * 109.47149 * 0.02562 * 8 6 4 10 10 H 1.48498 * 109.46886 * 120.00539 * 8 6 4 11 11 H 1.48503 * 109.46985 * 240.00375 * 8 6 4 12 12 C 1.46901 * 110.99882 * 236.04788 * 2 1 3 13 13 C 1.52999 * 109.46962 * 277.31232 * 12 2 1 14 14 O 1.42893 * 109.23887 * 68.67306 * 13 12 2 15 15 C 1.52588 * 109.24309 * 309.26573 * 13 12 2 16 16 C 1.53038 * 109.98515 * 169.71406 * 15 13 12 17 17 S 1.81668 * 108.99712 * 63.64895 * 16 15 13 18 18 O 1.42101 * 108.66227 * 191.36926 * 17 16 15 19 19 O 1.42106 * 108.74950 * 60.06402 * 17 16 15 20 20 C 1.81667 * 101.30826 * 305.70295 * 17 16 15 21 21 C 1.52587 * 109.23941 * 188.11384 * 13 12 2 22 22 H 1.08996 * 109.47207 * 92.42775 * 1 2 3 23 23 H 1.09010 * 109.46735 * 212.42166 * 1 2 3 24 24 H 1.08995 * 109.47431 * 332.42236 * 1 2 3 25 25 H 1.09001 * 109.47093 * 306.04682 * 3 2 1 26 26 H 1.08996 * 109.46949 * 186.04970 * 3 2 1 27 27 H 0.96998 * 119.99507 * 179.97438 * 7 6 4 28 28 H 1.09000 * 109.47400 * 37.31752 * 12 2 1 29 29 H 1.09000 * 109.46785 * 157.31363 * 12 2 1 30 30 H 0.96702 * 114.00102 * 292.15596 * 14 13 12 31 31 H 1.09001 * 109.38844 * 289.87530 * 15 13 12 32 32 H 1.09007 * 109.38259 * 49.56085 * 15 13 12 33 33 H 1.09003 * 109.54723 * 303.79826 * 16 15 13 34 34 H 1.08991 * 109.54809 * 183.50563 * 16 15 13 35 35 H 1.08998 * 109.54984 * 294.43895 * 20 17 16 36 36 H 1.09005 * 109.54654 * 174.15482 * 20 17 16 37 37 H 1.08995 * 109.38997 * 310.44680 * 21 13 12 38 38 H 1.09006 * 109.38525 * 70.23295 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6368 2.0472 1.2984 5 1 1.0745 1.5112 2.0488 6 6 2.0275 3.3492 1.5289 7 7 2.7127 4.0016 0.6154 8 14 1.5836 4.1865 3.1387 9 1 0.8164 3.2438 3.9918 10 1 2.8256 4.5932 3.8439 11 1 0.7565 5.3880 2.8600 12 6 1.9955 -0.7660 -1.1376 13 6 2.0068 -2.2554 -0.7880 14 8 0.6613 -2.7281 -0.6977 15 6 2.6992 -2.4509 0.5576 16 6 2.4979 -3.8874 1.0456 17 16 3.3044 -5.0257 -0.1181 18 8 2.8961 -6.3522 0.1868 19 8 4.6911 -4.7195 -0.1697 20 6 2.5405 -4.5289 -1.6896 21 6 2.7372 -3.0239 -1.8854 22 1 -0.3633 -0.0435 -1.0267 23 1 -0.3633 -0.8676 0.5510 24 1 -0.3634 0.9108 0.4757 25 1 1.5611 1.9274 -0.8309 26 1 3.0797 1.3445 -0.1083 27 1 2.9872 4.9177 0.7774 28 1 1.3627 -0.6022 -2.0099 29 1 3.0108 -0.4368 -1.3585 30 1 0.1668 -2.3663 0.0504 31 1 3.7653 -2.2519 0.4483 32 1 2.2763 -1.7588 1.2859 33 1 1.4320 -4.1101 1.0941 34 1 2.9414 -4.0020 2.0346 35 1 1.4750 -4.7574 -1.6656 36 1 3.0122 -5.0683 -2.5110 37 1 2.3410 -2.7307 -2.8576 38 1 3.8012 -2.7911 -1.8433 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001191391637.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:55 Heat of formation + Delta-G solvation = -115.965295 kcal Electronic energy + Delta-G solvation = -20897.650637 eV Core-core repulsion = 17674.614520 eV Total energy + Delta-G solvation = -3223.036117 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.50286 -37.01844 -36.04554 -35.88462 -33.73900 -32.59030 -31.90198 -29.21279 -27.29025 -25.36413 -23.77494 -23.26698 -20.71374 -20.22345 -18.86116 -17.06895 -16.77111 -16.35966 -16.27428 -15.76339 -15.03231 -14.93046 -14.49338 -14.24015 -13.91165 -13.70315 -13.04384 -13.00840 -12.85110 -12.26795 -12.11694 -12.10451 -12.03315 -11.90315 -11.76389 -11.62708 -11.18383 -11.00011 -10.89647 -10.72537 -10.65828 -10.52661 -10.14516 -9.87811 -9.81208 -9.23579 -8.55551 -7.46080 -6.13226 -4.15313 0.02886 2.64116 3.24066 3.32317 3.35711 3.61358 3.88668 4.14992 4.31490 4.43931 4.52539 4.66321 4.74772 4.91951 5.09238 5.13177 5.22340 5.25139 5.54226 5.63812 5.70915 5.80089 5.81270 5.93571 6.00652 6.13482 6.26242 6.45277 6.59110 7.09748 7.19967 7.67406 7.68583 7.91875 8.02672 8.37768 8.92351 9.49711 10.97510 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.031602 B = 0.004405 C = 0.004266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.807794 B = 6354.766045 C = 6562.116409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.541 5.541 3 C 0.192 3.808 4 C -0.511 4.511 5 H 0.064 0.936 6 C 0.056 3.944 7 N -0.897 5.897 8 Si 0.898 3.102 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.285 1.285 12 C 0.029 3.971 13 C 0.127 3.873 14 O -0.566 6.566 15 C -0.135 4.135 16 C -0.591 4.591 17 S 2.410 3.590 18 O -0.954 6.954 19 O -0.943 6.943 20 C -0.592 4.592 21 C -0.096 4.096 22 H 0.021 0.979 23 H 0.045 0.955 24 H 0.078 0.922 25 H -0.008 1.008 26 H 0.031 0.969 27 H 0.262 0.738 28 H 0.043 0.957 29 H 0.078 0.922 30 H 0.382 0.618 31 H 0.089 0.911 32 H 0.120 0.880 33 H 0.135 0.865 34 H 0.131 0.869 35 H 0.141 0.859 36 H 0.128 0.872 37 H 0.090 0.910 38 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.120 -14.298 -3.675 14.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.265 5.265 3 C 0.067 3.933 4 C -0.549 4.549 5 H 0.082 0.918 6 C -0.145 4.145 7 N -0.536 5.536 8 Si 0.726 3.274 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.211 1.211 12 C -0.100 4.100 13 C 0.085 3.915 14 O -0.376 6.376 15 C -0.173 4.173 16 C -0.721 4.721 17 S 2.594 3.406 18 O -0.951 6.951 19 O -0.940 6.940 20 C -0.722 4.722 21 C -0.135 4.135 22 H 0.040 0.960 23 H 0.063 0.937 24 H 0.096 0.904 25 H 0.010 0.990 26 H 0.049 0.951 27 H 0.071 0.929 28 H 0.062 0.938 29 H 0.097 0.903 30 H 0.234 0.766 31 H 0.107 0.893 32 H 0.138 0.862 33 H 0.153 0.847 34 H 0.150 0.850 35 H 0.160 0.840 36 H 0.146 0.854 37 H 0.109 0.891 38 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -1.062 -15.334 -3.634 15.795 hybrid contribution -1.239 1.876 0.413 2.286 sum -2.301 -13.458 -3.220 14.028 Atomic orbital electron populations 1.22482 0.88863 1.01845 0.98897 1.62104 1.06921 1.18233 1.39200 1.19821 0.95414 0.81302 0.96763 1.21163 1.35103 0.96971 1.01675 0.91774 1.24989 0.95188 0.97372 0.96988 1.69959 1.38121 1.11482 1.34023 0.86448 0.78201 0.79338 0.83452 1.19680 1.20965 1.21105 1.22766 1.01410 0.92523 0.93305 1.21289 0.82744 0.93889 0.93543 1.86398 1.24348 1.72205 1.54690 1.21979 1.03383 0.93001 0.98980 1.30076 1.14476 1.11898 1.15691 1.08165 0.76612 0.76311 0.79535 1.93563 1.84242 1.33948 1.83370 1.93578 1.28790 1.85610 1.86015 1.30035 1.14929 1.05738 1.21483 1.21293 1.01589 0.89900 1.00727 0.96044 0.93681 0.90351 0.99023 0.95075 0.92867 0.93848 0.90307 0.76608 0.89286 0.86167 0.84713 0.85035 0.84032 0.85360 0.89098 0.88640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 8.78 60.07 0.53 0.98 16 2 N -0.54 -9.91 3.28 -244.36 -0.80 -10.71 16 3 C 0.19 4.57 4.63 -4.97 -0.02 4.54 16 4 C -0.51 -13.34 8.13 -34.44 -0.28 -13.62 16 5 H 0.06 1.65 7.51 -52.48 -0.39 1.26 16 6 C 0.06 1.52 5.46 -17.82 -0.10 1.42 16 7 N -0.90 -25.57 13.29 55.43 0.74 -24.84 16 8 Si 0.90 20.73 29.54 -169.99 -5.02 15.71 16 9 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 10 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 12 C 0.03 0.45 4.36 -3.82 -0.02 0.43 16 13 C 0.13 1.55 0.77 -91.04 -0.07 1.48 16 14 O -0.57 -6.60 10.39 -35.23 -0.37 -6.96 16 15 C -0.13 -1.66 4.63 -26.92 -0.12 -1.78 16 16 C -0.59 -5.95 6.17 37.18 0.23 -5.72 16 17 S 2.41 26.83 5.30 -107.50 -0.57 26.26 16 18 O -0.95 -13.53 18.10 -57.82 -1.05 -14.57 16 19 O -0.94 -13.49 17.95 -57.82 -1.04 -14.53 16 20 C -0.59 -5.47 6.17 37.18 0.23 -5.24 16 21 C -0.10 -1.00 4.82 -26.93 -0.13 -1.13 16 22 H 0.02 0.34 7.39 -51.93 -0.38 -0.05 16 23 H 0.04 0.61 6.02 -51.92 -0.31 0.30 16 24 H 0.08 1.49 6.65 -51.93 -0.35 1.14 16 25 H -0.01 -0.21 8.12 -51.93 -0.42 -0.63 16 26 H 0.03 0.80 7.79 -51.93 -0.40 0.39 16 27 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 28 H 0.04 0.66 7.45 -51.93 -0.39 0.28 16 29 H 0.08 1.22 7.60 -51.93 -0.39 0.83 16 30 H 0.38 4.11 5.95 45.56 0.27 4.38 16 31 H 0.09 1.10 8.02 -51.93 -0.42 0.68 16 32 H 0.12 1.69 6.97 -51.93 -0.36 1.33 16 33 H 0.13 1.15 7.35 -51.93 -0.38 0.77 16 34 H 0.13 1.17 8.14 -51.93 -0.42 0.74 16 35 H 0.14 1.23 7.35 -51.93 -0.38 0.84 16 36 H 0.13 0.94 8.14 -51.92 -0.42 0.52 16 37 H 0.09 0.88 8.10 -51.93 -0.42 0.46 16 38 H 0.10 0.93 8.01 -51.93 -0.42 0.51 16 LS Contribution 307.96 15.07 4.64 4.64 Total: -1.00 -32.84 307.96 -8.35 -41.19 By element: Atomic # 1 Polarization: 7.58 SS G_CDS: -5.13 Total: 2.45 kcal Atomic # 6 Polarization: -18.88 SS G_CDS: 0.24 Total: -18.63 kcal Atomic # 7 Polarization: -35.48 SS G_CDS: -0.06 Total: -35.55 kcal Atomic # 8 Polarization: -33.62 SS G_CDS: -2.45 Total: -36.07 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Atomic # 16 Polarization: 26.83 SS G_CDS: -0.57 Total: 26.26 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -32.84 -8.35 -41.19 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001191391637.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.777 kcal (2) G-P(sol) polarization free energy of solvation -32.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds