Wall clock time and date at job start Mon Mar 30 2020 01:27:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08995 * 109.37410 * 2 1 4 4 C 1.53953 * 109.36591 * 119.74610 * 2 1 3 5 5 N 1.47607 * 112.14419 * 79.49819 * 4 2 1 6 6 S 1.65598 * 118.64521 * 137.87222 * 5 4 2 7 7 O 1.42109 * 106.40010 * 336.45615 * 6 5 4 8 8 O 1.42098 * 106.40218 * 203.53879 * 6 5 4 9 9 C 1.76198 * 107.21943 * 89.99736 * 6 5 4 10 10 H 1.07993 * 119.99891 * 359.97438 * 9 6 5 11 11 C 1.37874 * 119.99717 * 179.72770 * 9 6 5 12 12 N 1.31521 * 120.00432 * 0.27388 * 11 9 6 13 13 Si 1.86804 * 120.00088 * 180.27269 * 11 9 6 14 14 H 1.48497 * 109.46753 * 0.02562 * 13 11 9 15 15 H 1.48502 * 109.46960 * 119.99843 * 13 11 9 16 16 H 1.48499 * 109.47315 * 239.99856 * 13 11 9 17 17 C 1.44578 * 122.71327 * 318.14299 * 5 4 2 18 18 C 1.54317 * 109.90774 * 90.57869 * 17 5 4 19 19 C 1.47096 * 110.29194 * 288.75963 * 18 17 5 20 20 C 1.50885 * 109.26255 * 240.31321 * 2 1 3 21 21 C 1.52994 * 109.48987 * 91.72980 * 20 2 1 22 22 O 1.42902 * 109.48837 * 211.77618 * 20 2 1 23 23 H 1.08999 * 109.47243 * 300.61603 * 1 2 3 24 24 H 1.09005 * 109.47107 * 60.61165 * 1 2 3 25 25 H 1.08995 * 109.47893 * 180.61072 * 1 2 3 26 26 H 1.09005 * 108.94399 * 318.81198 * 4 2 1 27 27 H 1.08997 * 108.87520 * 200.13490 * 4 2 1 28 28 H 0.96994 * 120.00023 * 179.97438 * 12 11 9 29 29 H 1.09000 * 109.45423 * 210.49006 * 17 5 4 30 30 H 1.08998 * 109.45243 * 330.40887 * 17 5 4 31 31 H 1.08999 * 109.39914 * 168.47075 * 18 17 5 32 32 H 1.08995 * 109.13776 * 48.88653 * 18 17 5 33 33 H 1.08996 * 108.51606 * 301.47527 * 19 18 17 34 34 H 1.08996 * 108.38786 * 183.89381 * 19 18 17 35 35 H 1.08997 * 109.47176 * 59.99812 * 21 20 2 36 36 H 1.09001 * 109.47328 * 180.02562 * 21 20 2 37 37 H 1.09003 * 109.47070 * 299.99681 * 21 20 2 38 38 H 0.96705 * 113.99780 * 180.02562 * 22 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8915 1.0282 0.0000 4 6 2.0405 -0.7206 1.2610 5 7 1.9899 -2.1892 1.1215 6 16 3.2679 -3.0839 1.6770 7 8 4.3919 -2.2145 1.6873 8 8 3.2406 -4.3106 0.9603 9 6 2.9325 -3.4835 3.3600 10 1 2.0191 -3.1423 3.8243 11 6 3.8339 -4.2360 4.0826 12 7 4.9465 -4.6511 3.5174 13 14 3.4748 -4.6661 5.8647 14 1 2.1672 -4.0843 6.2604 15 1 3.4258 -6.1425 6.0173 16 1 4.5459 -4.1141 6.7326 17 6 0.8731 -2.8785 0.5148 18 6 1.1162 -3.0407 -1.0004 19 6 0.9974 -1.7407 -1.6783 20 6 2.0277 -0.7054 -1.2374 21 6 2.2372 0.3154 -2.3575 22 8 3.2661 -1.3575 -0.9488 23 1 -0.3634 0.5234 0.8844 24 1 -0.3633 0.5043 -0.8955 25 1 -0.3635 -1.0275 0.0110 26 1 1.4258 -0.4244 2.1112 27 1 3.0709 -0.4181 1.4472 28 1 5.5807 -5.1802 4.0259 29 1 0.7652 -3.8639 0.9679 30 1 -0.0389 -2.3037 0.6757 31 1 0.3809 -3.7314 -1.4132 32 1 2.1172 -3.4411 -1.1609 33 1 0.0015 -1.3407 -1.4876 34 1 1.1051 -1.9011 -2.7509 35 1 2.9718 1.0560 -2.0414 36 1 2.5964 -0.1945 -3.2514 37 1 1.2922 0.8120 -2.5780 38 1 3.6454 -1.8321 -1.7012 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192951965.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:13 Heat of formation + Delta-G solvation = -125.986560 kcal Electronic energy + Delta-G solvation = -22179.314621 eV Core-core repulsion = 18955.843949 eV Total energy + Delta-G solvation = -3223.470672 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.99466 -35.39481 -35.04071 -33.67707 -33.23391 -32.88874 -32.54230 -29.21744 -26.54255 -25.99485 -24.62418 -23.12123 -20.80287 -18.75161 -18.52151 -16.85493 -16.52557 -16.10514 -15.97438 -15.22477 -14.66790 -13.96822 -13.86663 -13.71580 -13.50096 -12.97278 -12.75004 -12.60053 -12.43631 -12.10858 -11.87392 -11.73806 -11.38153 -11.21993 -11.16892 -11.10149 -10.77510 -10.65458 -10.51507 -10.08808 -10.00344 -9.96589 -9.74795 -9.61200 -9.35684 -9.15870 -8.66858 -7.87085 -6.58473 -5.19577 2.54249 3.10486 3.18745 3.26581 4.15226 4.46223 4.69982 4.74208 4.89316 4.98408 5.10210 5.32297 5.33603 5.43961 5.52527 5.64739 5.71513 5.89422 5.93608 5.96487 6.01669 6.06296 6.11215 6.18642 6.27073 6.33271 6.40698 6.45033 6.54650 6.63298 6.72422 6.93882 7.05325 7.43152 7.95899 8.09529 8.13322 9.00368 10.34158 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.032755 B = 0.006792 C = 0.006606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.625027 B = 4121.582512 C = 4237.820729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.089 4.089 3 H 0.079 0.921 4 C 0.140 3.860 5 N -0.989 5.989 6 S 2.728 3.272 7 O -0.999 6.999 8 O -1.010 7.010 9 C -1.030 5.030 10 H 0.099 0.901 11 C 0.133 3.867 12 N -0.847 5.847 13 Si 0.915 3.085 14 H -0.263 1.263 15 H -0.271 1.271 16 H -0.271 1.271 17 C 0.128 3.872 18 C -0.138 4.138 19 C -0.155 4.155 20 C 0.141 3.859 21 C -0.174 4.174 22 O -0.537 6.537 23 H 0.055 0.945 24 H 0.051 0.949 25 H 0.080 0.920 26 H 0.048 0.952 27 H 0.094 0.906 28 H 0.288 0.712 29 H 0.075 0.925 30 H 0.069 0.931 31 H 0.063 0.937 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.051 0.949 35 H 0.062 0.938 36 H 0.054 0.946 37 H 0.060 0.940 38 H 0.367 0.633 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.526 7.944 -8.422 14.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.109 4.109 3 H 0.097 0.903 4 C 0.014 3.986 5 N -0.823 5.823 6 S 2.828 3.172 7 O -0.990 6.990 8 O -1.000 7.000 9 C -1.162 5.162 10 H 0.117 0.883 11 C -0.084 4.084 12 N -0.477 5.477 13 Si 0.739 3.261 14 H -0.187 1.187 15 H -0.197 1.197 16 H -0.196 1.196 17 C 0.001 3.999 18 C -0.178 4.178 19 C -0.193 4.193 20 C 0.100 3.900 21 C -0.232 4.232 22 O -0.342 6.342 23 H 0.074 0.926 24 H 0.070 0.930 25 H 0.098 0.902 26 H 0.066 0.934 27 H 0.112 0.888 28 H 0.099 0.901 29 H 0.093 0.907 30 H 0.087 0.913 31 H 0.082 0.918 32 H 0.095 0.905 33 H 0.098 0.902 34 H 0.069 0.931 35 H 0.081 0.919 36 H 0.073 0.927 37 H 0.079 0.921 38 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -8.745 7.903 -8.355 14.448 hybrid contribution -0.485 -0.424 0.772 1.005 sum -9.229 7.479 -7.583 14.093 Atomic orbital electron populations 1.22402 0.95154 1.03111 1.01159 1.21247 0.95569 0.99177 0.94908 0.90297 1.21227 1.02667 0.80107 0.94564 1.57271 1.36267 1.13879 1.74888 1.00182 0.70688 0.71478 0.74858 1.93318 1.49186 1.67477 1.88985 1.93317 1.86047 1.45488 1.75163 1.30900 1.15238 1.46879 1.23198 0.88299 1.24736 0.92409 0.90844 1.00434 1.69918 1.08398 1.30734 1.38674 0.86219 0.79432 0.78709 0.81702 1.18678 1.19655 1.19627 1.20988 0.89921 0.96831 0.92125 1.21126 1.03463 0.96230 0.96953 1.21404 1.01189 0.96994 0.99669 1.20519 0.84860 0.91012 0.93608 1.22563 1.01999 0.99999 0.98616 1.86814 1.36769 1.70743 1.39855 0.92555 0.92965 0.90212 0.93376 0.88774 0.90141 0.90713 0.91323 0.91818 0.90518 0.90190 0.93067 0.91866 0.92686 0.92091 0.78694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.82 7.48 37.16 0.28 -1.55 16 2 C -0.09 -1.25 2.62 -91.19 -0.24 -1.48 16 3 H 0.08 1.01 7.74 -51.93 -0.40 0.61 16 4 C 0.14 2.55 5.16 -2.94 -0.02 2.53 16 5 N -0.99 -20.49 1.93 -113.63 -0.22 -20.71 16 6 S 2.73 74.57 4.33 -107.50 -0.47 74.11 16 7 O -1.00 -30.01 16.18 -57.32 -0.93 -30.94 16 8 O -1.01 -29.79 16.24 -57.17 -0.93 -30.71 16 9 C -1.03 -29.58 9.75 30.60 0.30 -29.28 16 10 H 0.10 2.63 7.81 -52.49 -0.41 2.22 16 11 C 0.13 3.85 5.46 -17.82 -0.10 3.75 16 12 N -0.85 -25.75 13.19 55.43 0.73 -25.02 16 13 Si 0.92 21.22 29.54 -169.99 -5.02 16.20 16 14 H -0.26 -5.87 7.11 56.52 0.40 -5.47 16 15 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 16 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 17 C 0.13 2.26 5.12 -4.38 -0.02 2.24 16 18 C -0.14 -2.16 5.44 -28.88 -0.16 -2.32 16 19 C -0.16 -1.99 4.35 -29.79 -0.13 -2.12 16 20 C 0.14 1.96 0.83 -91.91 -0.08 1.88 16 21 C -0.17 -1.93 8.44 37.15 0.31 -1.62 16 22 O -0.54 -9.47 8.98 -35.23 -0.32 -9.78 16 23 H 0.06 0.59 8.13 -51.93 -0.42 0.17 16 24 H 0.05 0.49 7.82 -51.93 -0.41 0.09 16 25 H 0.08 0.93 3.15 -51.93 -0.16 0.77 16 26 H 0.05 0.79 7.98 -51.93 -0.41 0.38 16 27 H 0.09 1.95 6.63 -51.93 -0.34 1.61 16 28 H 0.29 7.85 8.31 -40.82 -0.34 7.51 16 29 H 0.07 1.41 7.67 -51.93 -0.40 1.01 16 30 H 0.07 0.99 5.21 -51.93 -0.27 0.72 16 31 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.08 1.41 6.65 -51.93 -0.35 1.07 16 33 H 0.08 0.90 4.65 -51.93 -0.24 0.66 16 34 H 0.05 0.58 7.81 -51.93 -0.41 0.18 16 35 H 0.06 0.72 8.09 -51.93 -0.42 0.30 16 36 H 0.05 0.56 8.09 -51.93 -0.42 0.14 16 37 H 0.06 0.58 8.07 -51.93 -0.42 0.16 16 38 H 0.37 5.44 8.89 45.56 0.41 5.84 16 LS Contribution 297.22 15.07 4.48 4.48 Total: -1.00 -36.07 297.22 -7.15 -43.22 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: -4.64 Total: 7.12 kcal Atomic # 6 Polarization: -28.12 SS G_CDS: 0.15 Total: -27.96 kcal Atomic # 7 Polarization: -46.23 SS G_CDS: 0.51 Total: -45.72 kcal Atomic # 8 Polarization: -69.27 SS G_CDS: -2.17 Total: -71.44 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Atomic # 16 Polarization: 74.57 SS G_CDS: -0.47 Total: 74.11 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -36.07 -7.15 -43.22 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192951965.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.767 kcal (2) G-P(sol) polarization free energy of solvation -36.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds