Wall clock time and date at job start Mon Mar 30 2020 01:27:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08995 * 109.37410 * 2 1 4 4 C 1.53953 * 109.36591 * 119.74610 * 2 1 3 5 5 N 1.47607 * 112.14419 * 79.49819 * 4 2 1 6 6 S 1.65598 * 118.64521 * 137.87222 * 5 4 2 7 7 O 1.42109 * 106.40010 * 336.45615 * 6 5 4 8 8 O 1.42098 * 106.40218 * 203.53879 * 6 5 4 9 9 C 1.76198 * 107.21943 * 89.99736 * 6 5 4 10 10 H 1.07993 * 119.99891 * 359.97438 * 9 6 5 11 11 C 1.37874 * 119.99717 * 179.72770 * 9 6 5 12 12 N 1.31521 * 120.00432 * 0.27388 * 11 9 6 13 13 Si 1.86804 * 120.00088 * 180.27269 * 11 9 6 14 14 H 1.48497 * 109.46753 * 0.02562 * 13 11 9 15 15 H 1.48502 * 109.46960 * 119.99843 * 13 11 9 16 16 H 1.48499 * 109.47315 * 239.99856 * 13 11 9 17 17 C 1.44578 * 122.71327 * 318.14299 * 5 4 2 18 18 C 1.54317 * 109.90774 * 90.57869 * 17 5 4 19 19 C 1.47096 * 110.29194 * 288.75963 * 18 17 5 20 20 C 1.50885 * 109.26255 * 240.31321 * 2 1 3 21 21 C 1.52994 * 109.48987 * 91.72980 * 20 2 1 22 22 O 1.42902 * 109.48837 * 211.77618 * 20 2 1 23 23 H 1.08999 * 109.47243 * 300.61603 * 1 2 3 24 24 H 1.09005 * 109.47107 * 60.61165 * 1 2 3 25 25 H 1.08995 * 109.47893 * 180.61072 * 1 2 3 26 26 H 1.09005 * 108.94399 * 318.81198 * 4 2 1 27 27 H 1.08997 * 108.87520 * 200.13490 * 4 2 1 28 28 H 0.96994 * 120.00023 * 179.97438 * 12 11 9 29 29 H 1.09000 * 109.45423 * 210.49006 * 17 5 4 30 30 H 1.08998 * 109.45243 * 330.40887 * 17 5 4 31 31 H 1.08999 * 109.39914 * 168.47075 * 18 17 5 32 32 H 1.08995 * 109.13776 * 48.88653 * 18 17 5 33 33 H 1.08996 * 108.51606 * 301.47527 * 19 18 17 34 34 H 1.08996 * 108.38786 * 183.89381 * 19 18 17 35 35 H 1.08997 * 109.47176 * 59.99812 * 21 20 2 36 36 H 1.09001 * 109.47328 * 180.02562 * 21 20 2 37 37 H 1.09003 * 109.47070 * 299.99681 * 21 20 2 38 38 H 0.96705 * 113.99780 * 180.02562 * 22 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8915 1.0282 0.0000 4 6 2.0405 -0.7206 1.2610 5 7 1.9899 -2.1892 1.1215 6 16 3.2679 -3.0839 1.6770 7 8 4.3919 -2.2145 1.6873 8 8 3.2406 -4.3106 0.9603 9 6 2.9325 -3.4835 3.3600 10 1 2.0191 -3.1423 3.8243 11 6 3.8339 -4.2360 4.0826 12 7 4.9465 -4.6511 3.5174 13 14 3.4748 -4.6661 5.8647 14 1 2.1672 -4.0843 6.2604 15 1 3.4258 -6.1425 6.0173 16 1 4.5459 -4.1141 6.7326 17 6 0.8731 -2.8785 0.5148 18 6 1.1162 -3.0407 -1.0004 19 6 0.9974 -1.7407 -1.6783 20 6 2.0277 -0.7054 -1.2374 21 6 2.2372 0.3154 -2.3575 22 8 3.2661 -1.3575 -0.9488 23 1 -0.3634 0.5234 0.8844 24 1 -0.3633 0.5043 -0.8955 25 1 -0.3635 -1.0275 0.0110 26 1 1.4258 -0.4244 2.1112 27 1 3.0709 -0.4181 1.4472 28 1 5.5807 -5.1802 4.0259 29 1 0.7652 -3.8639 0.9679 30 1 -0.0389 -2.3037 0.6757 31 1 0.3809 -3.7314 -1.4132 32 1 2.1172 -3.4411 -1.1609 33 1 0.0015 -1.3407 -1.4876 34 1 1.1051 -1.9011 -2.7509 35 1 2.9718 1.0560 -2.0414 36 1 2.5964 -0.1945 -3.2514 37 1 1.2922 0.8120 -2.5780 38 1 3.6454 -1.8321 -1.7012 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192951965.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:12 Heat of formation + Delta-G solvation = -155.389084 kcal Electronic energy + Delta-G solvation = -22180.589610 eV Core-core repulsion = 18955.843949 eV Total energy + Delta-G solvation = -3224.745661 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.15932 -37.30841 -36.71622 -35.92087 -35.16374 -34.38749 -33.85247 -30.23651 -28.23018 -27.72571 -25.88165 -24.22686 -22.22684 -20.69209 -19.83192 -18.70223 -18.19870 -17.65876 -17.22350 -17.08339 -16.20240 -15.72336 -15.61129 -15.09513 -14.80088 -14.37867 -14.15128 -13.91805 -13.73967 -13.45205 -13.28965 -13.14037 -13.03194 -12.87291 -12.63234 -12.39494 -12.30131 -12.28079 -12.25906 -12.09335 -11.75178 -11.38643 -11.26410 -11.05606 -10.98072 -10.72672 -10.51516 -9.49367 -8.71604 -7.46708 0.52104 1.30423 1.30920 1.48852 2.21218 2.57711 2.98703 3.38348 3.87145 3.89565 3.98200 4.02323 4.12988 4.19691 4.30993 4.52970 4.55169 4.60726 4.72641 4.80959 4.87125 4.87471 4.94284 5.03195 5.08432 5.14687 5.20825 5.22588 5.26818 5.33201 5.44717 5.53335 5.55749 5.68891 5.91805 6.33420 6.79292 7.00597 8.21989 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.032755 B = 0.006792 C = 0.006606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.625027 B = 4121.582512 C = 4237.820729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.087 4.087 3 H 0.092 0.908 4 C 0.131 3.869 5 N -0.978 5.978 6 S 2.732 3.268 7 O -1.040 7.040 8 O -1.044 7.044 9 C -1.057 5.057 10 H 0.112 0.888 11 C 0.067 3.933 12 N -0.897 5.897 13 Si 0.987 3.013 14 H -0.247 1.247 15 H -0.256 1.256 16 H -0.257 1.257 17 C 0.115 3.885 18 C -0.136 4.136 19 C -0.152 4.152 20 C 0.128 3.872 21 C -0.166 4.166 22 O -0.574 6.574 23 H 0.066 0.934 24 H 0.081 0.919 25 H 0.076 0.924 26 H 0.066 0.934 27 H 0.057 0.943 28 H 0.297 0.703 29 H 0.053 0.947 30 H 0.111 0.889 31 H 0.088 0.912 32 H 0.038 0.962 33 H 0.108 0.892 34 H 0.070 0.930 35 H 0.054 0.946 36 H 0.062 0.938 37 H 0.086 0.914 38 H 0.371 0.629 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.423 9.208 -8.490 17.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.107 4.107 3 H 0.110 0.890 4 C 0.006 3.994 5 N -0.816 5.816 6 S 2.833 3.167 7 O -1.030 7.030 8 O -1.035 7.035 9 C -1.189 5.189 10 H 0.131 0.869 11 C -0.145 4.145 12 N -0.528 5.528 13 Si 0.805 3.195 14 H -0.170 1.170 15 H -0.181 1.181 16 H -0.182 1.182 17 C -0.011 4.011 18 C -0.175 4.175 19 C -0.189 4.189 20 C 0.087 3.913 21 C -0.223 4.223 22 O -0.380 6.380 23 H 0.085 0.915 24 H 0.100 0.900 25 H 0.094 0.906 26 H 0.084 0.916 27 H 0.076 0.924 28 H 0.107 0.893 29 H 0.071 0.929 30 H 0.128 0.872 31 H 0.106 0.894 32 H 0.057 0.943 33 H 0.126 0.874 34 H 0.089 0.911 35 H 0.073 0.927 36 H 0.081 0.919 37 H 0.105 0.895 38 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -11.644 9.173 -8.448 17.061 hybrid contribution 0.396 -0.771 0.736 1.137 sum -11.248 8.401 -7.712 16.018 Atomic orbital electron populations 1.22360 0.92327 1.03358 1.03267 1.21334 0.97855 0.99023 0.92519 0.88998 1.21454 1.01284 0.78626 0.98000 1.56696 1.35420 1.14651 1.74794 0.99674 0.71383 0.71007 0.74649 1.93252 1.52195 1.68167 1.89361 1.93253 1.87000 1.47545 1.75657 1.31321 1.15967 1.47250 1.24376 0.86934 1.26059 0.91874 0.90339 1.06232 1.70013 1.09812 1.31857 1.41166 0.85158 0.80235 0.79338 0.74773 1.17014 1.18052 1.18152 1.21360 0.90257 0.96226 0.93218 1.21107 1.01992 0.98555 0.95847 1.21376 1.02162 0.95045 1.00338 1.20879 0.83823 0.91888 0.94674 1.22466 1.03179 0.99049 0.97608 1.86798 1.38768 1.71379 1.41060 0.91477 0.89999 0.90587 0.91628 0.92434 0.89257 0.92871 0.87163 0.89405 0.94307 0.87394 0.91141 0.92672 0.91902 0.89507 0.78171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.81 7.48 71.98 0.54 -2.28 16 2 C -0.09 -2.24 2.62 -11.16 -0.03 -2.27 16 3 H 0.09 2.12 7.74 -2.39 -0.02 2.10 16 4 C 0.13 4.76 5.16 86.49 0.45 5.20 16 5 N -0.98 -41.02 1.93 -513.41 -0.99 -42.01 16 6 S 2.73 155.98 4.33 -56.49 -0.24 155.73 16 7 O -1.04 -66.03 16.18 -127.86 -2.07 -68.10 16 8 O -1.04 -64.87 16.24 -128.00 -2.08 -66.95 16 9 C -1.06 -62.16 9.75 67.73 0.66 -61.50 16 10 H 0.11 6.04 7.81 -2.91 -0.02 6.01 16 11 C 0.07 3.93 5.46 84.65 0.46 4.39 16 12 N -0.90 -56.31 13.19 21.45 0.28 -56.03 16 13 Si 0.99 43.22 29.54 68.60 2.03 45.25 16 14 H -0.25 -10.07 7.11 99.48 0.71 -9.36 16 15 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16 16 H -0.26 -10.59 7.11 99.48 0.71 -9.89 16 17 C 0.12 3.97 5.12 87.18 0.45 4.41 16 18 C -0.14 -4.10 5.44 29.21 0.16 -3.94 16 19 C -0.15 -3.45 4.35 28.61 0.12 -3.32 16 20 C 0.13 3.31 0.83 -11.63 -0.01 3.30 16 21 C -0.17 -3.19 8.44 71.98 0.61 -2.58 16 22 O -0.57 -20.79 8.98 -148.98 -1.34 -22.13 16 23 H 0.07 1.10 8.13 -2.39 -0.02 1.08 16 24 H 0.08 1.05 7.82 -2.38 -0.02 1.03 16 25 H 0.08 1.41 3.15 -2.39 -0.01 1.41 16 26 H 0.07 2.09 7.98 -2.38 -0.02 2.07 16 27 H 0.06 2.49 6.63 -2.39 -0.02 2.48 16 28 H 0.30 16.68 8.31 -92.71 -0.77 15.91 16 29 H 0.05 2.04 7.67 -2.39 -0.02 2.02 16 30 H 0.11 2.87 5.21 -2.39 -0.01 2.85 16 31 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 32 H 0.04 1.46 6.65 -2.39 -0.02 1.45 16 33 H 0.11 1.88 4.65 -2.39 -0.01 1.87 16 34 H 0.07 1.36 7.81 -2.39 -0.02 1.34 16 35 H 0.05 1.15 8.09 -2.39 -0.02 1.13 16 36 H 0.06 1.11 8.09 -2.39 -0.02 1.09 16 37 H 0.09 1.23 8.07 -2.39 -0.02 1.21 16 38 H 0.37 11.69 8.89 -74.05 -0.66 11.03 16 Total: -1.00 -83.03 297.22 -0.59 -83.62 By element: Atomic # 1 Polarization: 28.79 SS G_CDS: 0.42 Total: 29.20 kcal Atomic # 6 Polarization: -61.98 SS G_CDS: 3.41 Total: -58.58 kcal Atomic # 7 Polarization: -97.33 SS G_CDS: -0.71 Total: -98.04 kcal Atomic # 8 Polarization: -151.70 SS G_CDS: -5.49 Total: -157.18 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.25 kcal Atomic # 16 Polarization: 155.98 SS G_CDS: -0.24 Total: 155.73 kcal Total: -83.03 -0.59 -83.62 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192951965.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.770 kcal (2) G-P(sol) polarization free energy of solvation -83.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds