Wall clock time and date at job start Mon Mar 30 2020 01:51:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42894 * 109.47225 * 2 1 4 4 C 1.42899 * 114.00364 * 179.97438 * 3 2 1 5 5 C 1.52996 * 109.47361 * 179.97438 * 4 3 2 6 6 C 1.53042 * 109.45977 * 184.99790 * 5 4 3 7 7 C 1.53190 * 109.31216 * 178.63003 * 6 5 4 8 8 N 1.46921 * 108.77654 * 54.63578 * 7 6 5 9 9 S 1.65606 * 120.63289 * 126.36965 * 8 7 6 10 10 O 1.42105 * 106.40008 * 336.45758 * 9 8 7 11 11 O 1.42098 * 106.40370 * 203.53944 * 9 8 7 12 12 C 1.76193 * 107.21910 * 89.99915 * 9 8 7 13 13 H 1.08002 * 120.00351 * 0.02562 * 12 9 8 14 14 C 1.37881 * 120.00314 * 180.02562 * 12 9 8 15 15 N 1.31523 * 119.99660 * 359.97438 * 14 12 9 16 16 Si 1.86796 * 120.00522 * 179.97438 * 14 12 9 17 17 H 1.48501 * 109.46821 * 59.99622 * 16 14 12 18 18 H 1.48491 * 109.47369 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.46851 * 300.00015 * 16 14 12 20 20 C 1.46923 * 118.74101 * 306.64369 * 8 7 6 21 21 C 1.52760 * 109.00861 * 53.30804 * 20 8 7 22 22 H 1.08997 * 109.47482 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.47681 * 300.00304 * 1 2 3 24 24 H 1.09003 * 109.47122 * 60.00318 * 1 2 3 25 25 H 1.09000 * 109.46981 * 239.99439 * 2 1 3 26 26 H 1.09001 * 109.46436 * 119.99963 * 2 1 3 27 27 H 1.08999 * 109.46755 * 59.99392 * 4 3 2 28 28 H 1.09004 * 109.46746 * 300.00258 * 4 3 2 29 29 H 1.08998 * 109.46004 * 304.97009 * 5 4 3 30 30 H 1.08998 * 109.49686 * 58.67551 * 6 5 4 31 31 H 1.09006 * 109.52432 * 298.59645 * 6 5 4 32 32 H 1.08997 * 109.58822 * 294.84662 * 7 6 5 33 33 H 1.08998 * 109.70344 * 174.49077 * 7 6 5 34 34 H 0.96997 * 119.99726 * 180.02562 * 15 14 12 35 35 H 1.09001 * 109.59343 * 173.14863 * 20 8 7 36 36 H 1.09010 * 109.58634 * 293.56962 * 20 8 7 37 37 H 1.09006 * 109.56563 * 185.55777 * 21 20 8 38 38 H 1.09001 * 109.35973 * 65.50306 * 21 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4601 0.0006 5 6 3.8254 2.9383 -0.0001 6 6 5.3458 3.0602 -0.1252 7 6 5.7341 4.5417 -0.1600 8 7 5.1708 5.2061 1.0231 9 16 6.1399 6.0841 2.0393 10 8 7.4592 5.5852 1.8660 11 8 5.4794 6.1144 3.2970 12 6 6.1529 7.7424 1.4441 13 1 5.5857 8.0045 0.5632 14 6 6.8872 8.7057 2.1030 15 7 7.5776 8.3867 3.1760 16 14 6.9016 10.4636 1.4716 17 1 5.5177 11.0023 1.4756 18 1 7.7596 11.2982 2.3504 19 1 7.4383 10.4880 0.0872 20 6 3.7325 5.0719 1.2910 21 6 3.3656 3.5891 1.3066 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 1.8933 -0.5139 -0.8899 26 1 1.8932 -0.5139 0.8900 27 1 3.8340 0.9764 -0.8891 28 1 3.8332 0.9766 0.8908 29 1 3.3503 3.4406 -0.8428 30 1 5.6751 2.5760 -1.0445 31 1 5.8214 2.5794 0.7297 32 1 5.3346 5.0030 -1.0631 33 1 6.8199 4.6373 -0.1505 34 1 8.0938 9.0644 3.6398 35 1 3.4980 5.5151 2.2589 36 1 3.1663 5.5774 0.5086 37 1 2.2854 3.4813 1.4062 38 1 3.8593 3.1034 2.1483 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192963530.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:38 Heat of formation + Delta-G solvation = -155.361020 kcal Electronic energy + Delta-G solvation = -20393.186708 eV Core-core repulsion = 17168.442263 eV Total energy + Delta-G solvation = -3224.744444 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -38.85721 -37.33229 -35.25994 -33.91773 -33.16842 -32.87504 -30.99297 -30.61142 -26.47495 -26.04414 -23.15117 -22.68907 -22.15248 -19.86951 -18.71275 -17.27500 -16.64989 -16.28001 -16.15150 -15.10976 -14.89499 -14.66119 -14.21662 -14.13292 -13.62878 -13.44271 -13.11182 -12.82717 -12.69240 -12.50727 -11.96071 -11.89436 -11.50090 -11.43564 -11.22414 -11.18072 -10.90713 -10.71156 -10.60775 -10.49689 -10.38086 -10.24738 -9.93693 -9.85098 -9.63484 -9.21116 -8.88358 -8.13374 -6.66526 -5.28679 2.31257 3.10472 3.14540 3.20521 3.56993 4.08376 4.58528 4.66756 4.82575 4.87442 4.92228 5.08833 5.11741 5.19051 5.37461 5.43468 5.49943 5.57169 5.69379 5.72932 5.77116 5.87069 5.90690 5.92275 6.05270 6.17399 6.23277 6.24180 6.31628 6.39205 6.58312 6.64830 6.92034 7.15014 7.35684 7.65991 8.00776 8.91973 10.26900 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.040204 B = 0.004141 C = 0.004081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.283294 B = 6759.337533 C = 6858.991129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.057 3.943 3 O -0.387 6.387 4 C 0.068 3.932 5 C -0.082 4.082 6 C -0.126 4.126 7 C 0.126 3.874 8 N -1.012 6.012 9 S 2.716 3.284 10 O -1.005 7.005 11 O -1.005 7.005 12 C -1.022 5.022 13 H 0.101 0.899 14 C 0.132 3.868 15 N -0.847 5.847 16 Si 0.920 3.080 17 H -0.264 1.264 18 H -0.276 1.276 19 H -0.264 1.264 20 C 0.123 3.877 21 C -0.123 4.123 22 H 0.067 0.933 23 H 0.063 0.937 24 H 0.062 0.938 25 H 0.044 0.956 26 H 0.046 0.954 27 H 0.046 0.954 28 H 0.048 0.952 29 H 0.079 0.921 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.058 0.942 33 H 0.094 0.906 34 H 0.291 0.709 35 H 0.092 0.908 36 H 0.057 0.943 37 H 0.075 0.925 38 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.612 -12.447 -7.977 17.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.020 4.020 3 O -0.306 6.306 4 C -0.009 4.009 5 C -0.101 4.101 6 C -0.165 4.165 7 C -0.001 4.001 8 N -0.848 5.848 9 S 2.817 3.183 10 O -0.996 6.996 11 O -0.995 6.995 12 C -1.155 5.155 13 H 0.120 0.880 14 C -0.085 4.085 15 N -0.477 5.477 16 Si 0.744 3.256 17 H -0.189 1.189 18 H -0.201 1.201 19 H -0.189 1.189 20 C -0.003 4.003 21 C -0.162 4.162 22 H 0.086 0.914 23 H 0.082 0.918 24 H 0.081 0.919 25 H 0.063 0.937 26 H 0.064 0.936 27 H 0.064 0.936 28 H 0.066 0.934 29 H 0.097 0.903 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.076 0.924 33 H 0.112 0.888 34 H 0.101 0.899 35 H 0.111 0.889 36 H 0.075 0.925 37 H 0.094 0.906 38 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -9.164 -12.612 -7.064 17.115 hybrid contribution 0.026 1.079 -0.758 1.319 sum -9.137 -11.533 -7.822 16.664 Atomic orbital electron populations 1.21737 0.93916 1.01993 1.03183 1.22417 0.95492 0.84277 0.99809 1.87891 1.21510 1.25852 1.95374 1.22608 0.80787 0.97628 0.99864 1.21095 0.95992 0.93434 0.99561 1.21885 0.94517 0.97931 1.02166 1.21178 0.99670 0.90979 0.88241 1.58153 1.18220 1.67624 1.40787 1.00440 0.71298 0.74697 0.71833 1.93340 1.37652 1.82311 1.86265 1.93342 1.76015 1.88663 1.41470 1.30636 1.41699 1.18286 1.24861 0.88045 1.24760 0.90411 1.01180 0.92178 1.69895 1.24846 1.37176 1.15769 0.86209 0.79129 0.80702 0.79565 1.18851 1.20133 1.18864 1.21151 0.81377 0.95741 1.02035 1.21814 1.01278 0.96303 0.96816 0.91364 0.91775 0.91923 0.93736 0.93596 0.93558 0.93356 0.90295 0.91263 0.91379 0.92389 0.88782 0.89871 0.88929 0.92490 0.90629 0.91861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 10.28 37.16 0.38 -0.81 16 2 C 0.06 0.53 6.66 37.16 0.25 0.77 16 3 O -0.39 -4.73 9.85 -35.23 -0.35 -5.07 16 4 C 0.07 0.78 5.32 37.16 0.20 0.98 16 5 C -0.08 -1.09 2.39 -90.58 -0.22 -1.30 16 6 C -0.13 -1.75 5.36 -26.61 -0.14 -1.89 16 7 C 0.13 2.15 6.48 -3.71 -0.02 2.13 16 8 N -1.01 -20.82 3.30 -113.77 -0.37 -21.19 16 9 S 2.72 73.06 5.01 -107.50 -0.54 72.52 16 10 O -1.01 -29.38 16.61 -57.17 -0.95 -30.33 16 11 O -1.00 -29.57 16.60 -57.17 -0.95 -30.52 16 12 C -1.02 -28.58 9.75 30.60 0.30 -28.28 16 13 H 0.10 2.61 7.81 -52.49 -0.41 2.20 16 14 C 0.13 3.75 5.46 -17.81 -0.10 3.65 16 15 N -0.85 -25.23 13.19 55.43 0.73 -24.50 16 16 Si 0.92 20.82 29.54 -169.99 -5.02 15.80 16 17 H -0.26 -5.77 7.11 56.52 0.40 -5.37 16 18 H -0.28 -5.97 7.11 56.52 0.40 -5.56 16 19 H -0.26 -5.76 7.11 56.52 0.40 -5.36 16 20 C 0.12 2.19 6.45 -3.93 -0.03 2.16 16 21 C -0.12 -1.85 5.25 -26.83 -0.14 -1.99 16 22 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 23 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 27 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 29 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.09 1.73 6.92 -51.93 -0.36 1.37 16 34 H 0.29 7.79 8.31 -40.82 -0.34 7.45 16 35 H 0.09 1.77 6.91 -51.93 -0.36 1.41 16 36 H 0.06 0.90 8.14 -51.92 -0.42 0.48 16 37 H 0.08 1.05 7.79 -51.93 -0.40 0.64 16 38 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 322.40 15.07 4.86 4.86 Total: -1.00 -34.68 322.40 -8.28 -42.95 By element: Atomic # 1 Polarization: 6.23 SS G_CDS: -6.16 Total: 0.06 kcal Atomic # 6 Polarization: -25.06 SS G_CDS: 0.48 Total: -24.58 kcal Atomic # 7 Polarization: -46.05 SS G_CDS: 0.36 Total: -45.69 kcal Atomic # 8 Polarization: -63.67 SS G_CDS: -2.25 Total: -65.92 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Atomic # 16 Polarization: 73.06 SS G_CDS: -0.54 Total: 72.52 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -34.68 -8.28 -42.95 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192963530.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.409 kcal (2) G-P(sol) polarization free energy of solvation -34.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds