Wall clock time and date at job start Mon Mar 30 2020 01:51:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42894 * 109.47225 * 2 1 4 4 C 1.42899 * 114.00364 * 179.97438 * 3 2 1 5 5 C 1.52996 * 109.47361 * 179.97438 * 4 3 2 6 6 C 1.53042 * 109.45977 * 184.99790 * 5 4 3 7 7 C 1.53190 * 109.31216 * 178.63003 * 6 5 4 8 8 N 1.46921 * 108.77654 * 54.63578 * 7 6 5 9 9 S 1.65606 * 120.63289 * 126.36965 * 8 7 6 10 10 O 1.42105 * 106.40008 * 336.45758 * 9 8 7 11 11 O 1.42098 * 106.40370 * 203.53944 * 9 8 7 12 12 C 1.76193 * 107.21910 * 89.99915 * 9 8 7 13 13 H 1.08002 * 120.00351 * 0.02562 * 12 9 8 14 14 C 1.37881 * 120.00314 * 180.02562 * 12 9 8 15 15 N 1.31523 * 119.99660 * 359.97438 * 14 12 9 16 16 Si 1.86796 * 120.00522 * 179.97438 * 14 12 9 17 17 H 1.48501 * 109.46821 * 59.99622 * 16 14 12 18 18 H 1.48491 * 109.47369 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.46851 * 300.00015 * 16 14 12 20 20 C 1.46923 * 118.74101 * 306.64369 * 8 7 6 21 21 C 1.52760 * 109.00861 * 53.30804 * 20 8 7 22 22 H 1.08997 * 109.47482 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.47681 * 300.00304 * 1 2 3 24 24 H 1.09003 * 109.47122 * 60.00318 * 1 2 3 25 25 H 1.09000 * 109.46981 * 239.99439 * 2 1 3 26 26 H 1.09001 * 109.46436 * 119.99963 * 2 1 3 27 27 H 1.08999 * 109.46755 * 59.99392 * 4 3 2 28 28 H 1.09004 * 109.46746 * 300.00258 * 4 3 2 29 29 H 1.08998 * 109.46004 * 304.97009 * 5 4 3 30 30 H 1.08998 * 109.49686 * 58.67551 * 6 5 4 31 31 H 1.09006 * 109.52432 * 298.59645 * 6 5 4 32 32 H 1.08997 * 109.58822 * 294.84662 * 7 6 5 33 33 H 1.08998 * 109.70344 * 174.49077 * 7 6 5 34 34 H 0.96997 * 119.99726 * 180.02562 * 15 14 12 35 35 H 1.09001 * 109.59343 * 173.14863 * 20 8 7 36 36 H 1.09010 * 109.58634 * 293.56962 * 20 8 7 37 37 H 1.09006 * 109.56563 * 185.55777 * 21 20 8 38 38 H 1.09001 * 109.35973 * 65.50306 * 21 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4601 0.0006 5 6 3.8254 2.9383 -0.0001 6 6 5.3458 3.0602 -0.1252 7 6 5.7341 4.5417 -0.1600 8 7 5.1708 5.2061 1.0231 9 16 6.1399 6.0841 2.0393 10 8 7.4592 5.5852 1.8660 11 8 5.4794 6.1144 3.2970 12 6 6.1529 7.7424 1.4441 13 1 5.5857 8.0045 0.5632 14 6 6.8872 8.7057 2.1030 15 7 7.5776 8.3867 3.1760 16 14 6.9016 10.4636 1.4716 17 1 5.5177 11.0023 1.4756 18 1 7.7596 11.2982 2.3504 19 1 7.4383 10.4880 0.0872 20 6 3.7325 5.0719 1.2910 21 6 3.3656 3.5891 1.3066 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 1.8933 -0.5139 -0.8899 26 1 1.8932 -0.5139 0.8900 27 1 3.8340 0.9764 -0.8891 28 1 3.8332 0.9766 0.8908 29 1 3.3503 3.4406 -0.8428 30 1 5.6751 2.5760 -1.0445 31 1 5.8214 2.5794 0.7297 32 1 5.3346 5.0030 -1.0631 33 1 6.8199 4.6373 -0.1505 34 1 8.0938 9.0644 3.6398 35 1 3.4980 5.5151 2.2589 36 1 3.1663 5.5774 0.5086 37 1 2.2854 3.4813 1.4062 38 1 3.8593 3.1034 2.1483 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192963530.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:37 Heat of formation + Delta-G solvation = -181.380277 kcal Electronic energy + Delta-G solvation = -20394.314987 eV Core-core repulsion = 17168.442263 eV Total energy + Delta-G solvation = -3225.872724 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.95228 -38.38685 -37.46869 -36.13646 -35.19857 -34.17695 -32.00945 -31.71967 -28.27405 -27.55279 -24.28863 -23.54373 -23.38231 -21.17990 -20.70309 -19.01016 -18.33954 -17.49358 -17.07937 -16.97412 -16.56965 -15.97115 -15.69685 -15.27741 -15.24300 -14.91092 -14.45860 -13.99677 -13.91883 -13.80321 -13.37982 -13.24077 -13.08873 -13.00011 -12.51570 -12.47126 -12.43991 -12.32890 -12.25932 -12.11180 -12.02955 -11.61735 -11.36479 -11.24541 -11.23296 -10.96339 -10.45782 -9.74635 -8.74684 -7.49579 0.31555 1.32849 1.35361 1.48471 2.20225 2.56783 2.74453 2.86337 3.73939 3.82349 3.87346 3.98827 4.17788 4.21838 4.31259 4.38956 4.42771 4.50932 4.54035 4.54573 4.61273 4.69108 4.86994 4.90016 4.91142 4.94099 5.04654 5.08662 5.15049 5.20405 5.24141 5.31036 5.44987 5.49213 5.89620 6.03623 6.35713 6.77023 8.20035 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.040204 B = 0.004141 C = 0.004081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.283294 B = 6759.337533 C = 6858.991129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.049 3.951 3 O -0.407 6.407 4 C 0.071 3.929 5 C -0.077 4.077 6 C -0.120 4.120 7 C 0.114 3.886 8 N -1.009 6.009 9 S 2.717 3.283 10 O -1.040 7.040 11 O -1.043 7.043 12 C -1.044 5.044 13 H 0.118 0.882 14 C 0.068 3.932 15 N -0.896 5.896 16 Si 0.991 3.009 17 H -0.250 1.250 18 H -0.263 1.263 19 H -0.249 1.249 20 C 0.116 3.884 21 C -0.118 4.118 22 H 0.088 0.912 23 H 0.054 0.946 24 H 0.059 0.941 25 H 0.058 0.942 26 H 0.050 0.950 27 H 0.068 0.932 28 H 0.047 0.953 29 H 0.089 0.911 30 H 0.106 0.894 31 H 0.054 0.946 32 H 0.086 0.914 33 H 0.075 0.925 34 H 0.299 0.701 35 H 0.069 0.931 36 H 0.082 0.918 37 H 0.090 0.910 38 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.840 -12.676 -10.299 19.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.027 4.027 3 O -0.327 6.327 4 C -0.005 4.005 5 C -0.096 4.096 6 C -0.159 4.159 7 C -0.011 4.011 8 N -0.848 5.848 9 S 2.820 3.180 10 O -1.031 7.031 11 O -1.033 7.033 12 C -1.177 5.177 13 H 0.136 0.864 14 C -0.144 4.144 15 N -0.527 5.527 16 Si 0.808 3.192 17 H -0.174 1.174 18 H -0.187 1.187 19 H -0.172 1.172 20 C -0.009 4.009 21 C -0.157 4.157 22 H 0.107 0.893 23 H 0.074 0.926 24 H 0.078 0.922 25 H 0.076 0.924 26 H 0.068 0.932 27 H 0.086 0.914 28 H 0.065 0.935 29 H 0.108 0.892 30 H 0.124 0.876 31 H 0.073 0.927 32 H 0.104 0.896 33 H 0.093 0.907 34 H 0.109 0.891 35 H 0.088 0.912 36 H 0.101 0.899 37 H 0.108 0.892 38 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -10.395 -12.871 -9.382 19.019 hybrid contribution 0.349 1.053 -0.058 1.110 sum -10.046 -11.818 -9.440 18.158 Atomic orbital electron populations 1.21758 0.93089 1.03211 1.02612 1.22628 0.96230 0.83156 1.00678 1.87854 1.21629 1.27679 1.95551 1.22527 0.80909 0.96234 1.00862 1.21043 0.95310 0.94793 0.98461 1.21861 0.95126 0.95443 1.03520 1.21521 0.98735 0.93256 0.87600 1.57669 1.18873 1.67128 1.41102 0.99986 0.71036 0.75016 0.71953 1.93280 1.40072 1.82824 1.86874 1.93280 1.76549 1.89211 1.44266 1.31017 1.42043 1.19131 1.25530 0.86361 1.26065 0.89536 1.06715 0.92115 1.69993 1.26060 1.39257 1.17434 0.85160 0.80129 0.74208 0.79678 1.17393 1.18704 1.17233 1.21395 0.79762 0.98026 1.01765 1.21775 1.02004 0.94194 0.97735 0.89299 0.92637 0.92169 0.92356 0.93195 0.91421 0.93510 0.89250 0.87600 0.92673 0.89602 0.90682 0.89096 0.91228 0.89931 0.89191 0.93345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 10.28 71.98 0.74 -1.30 16 2 C 0.05 0.79 6.66 71.98 0.48 1.27 16 3 O -0.41 -8.94 9.85 -148.98 -1.47 -10.40 16 4 C 0.07 1.45 5.32 71.98 0.38 1.83 16 5 C -0.08 -1.86 2.39 -10.77 -0.03 -1.88 16 6 C -0.12 -3.09 5.36 30.67 0.16 -2.92 16 7 C 0.11 3.77 6.48 86.36 0.56 4.33 16 8 N -1.01 -41.57 3.30 -513.86 -1.69 -43.27 16 9 S 2.72 150.73 5.01 -56.49 -0.28 150.45 16 10 O -1.04 -63.16 16.61 -128.00 -2.13 -65.29 16 11 O -1.04 -64.08 16.60 -128.00 -2.12 -66.20 16 12 C -1.04 -58.97 9.75 67.74 0.66 -58.31 16 13 H 0.12 6.02 7.81 -2.91 -0.02 6.00 16 14 C 0.07 3.88 5.46 84.65 0.46 4.34 16 15 N -0.90 -54.63 13.19 21.45 0.28 -54.35 16 16 Si 0.99 41.88 29.54 68.60 2.03 43.91 16 17 H -0.25 -9.94 7.11 99.48 0.71 -9.24 16 18 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16 19 H -0.25 -9.82 7.11 99.48 0.71 -9.12 16 20 C 0.12 4.06 6.45 86.22 0.56 4.62 16 21 C -0.12 -3.42 5.25 30.53 0.16 -3.26 16 22 H 0.09 0.82 8.14 -2.39 -0.02 0.81 16 23 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 24 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 25 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 26 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 27 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 28 H 0.05 0.96 8.14 -2.38 -0.02 0.94 16 29 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 30 H 0.11 1.98 8.14 -2.39 -0.02 1.96 16 31 H 0.05 1.56 8.14 -2.38 -0.02 1.54 16 32 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 33 H 0.07 2.77 6.92 -2.39 -0.02 2.75 16 34 H 0.30 16.36 8.31 -92.71 -0.77 15.59 16 35 H 0.07 2.75 6.91 -2.39 -0.02 2.73 16 36 H 0.08 2.46 8.14 -2.38 -0.02 2.44 16 37 H 0.09 2.36 7.79 -2.38 -0.02 2.34 16 38 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 Total: -1.00 -77.12 322.40 -0.22 -77.34 By element: Atomic # 1 Polarization: 18.08 SS G_CDS: 1.02 Total: 19.10 kcal Atomic # 6 Polarization: -55.43 SS G_CDS: 4.14 Total: -51.29 kcal Atomic # 7 Polarization: -96.21 SS G_CDS: -1.41 Total: -97.62 kcal Atomic # 8 Polarization: -136.18 SS G_CDS: -5.72 Total: -141.90 kcal Atomic # 14 Polarization: 41.88 SS G_CDS: 2.03 Total: 43.91 kcal Atomic # 16 Polarization: 150.73 SS G_CDS: -0.28 Total: 150.45 kcal Total: -77.12 -0.22 -77.34 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192963530.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.041 kcal (2) G-P(sol) polarization free energy of solvation -77.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -181.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds