Wall clock time and date at job start Mon Mar 30 2020 02:09:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35975 * 117.00188 * 2 1 4 4 C 1.38582 * 120.07211 * 359.97438 * 3 2 1 5 5 C 1.38228 * 119.99747 * 179.72390 * 4 3 2 6 6 C 1.38263 * 120.14743 * 0.27831 * 5 4 3 7 7 C 1.38227 * 120.15224 * 359.97438 * 6 5 4 8 8 C 1.38582 * 119.99568 * 0.04350 * 7 6 5 9 9 O 1.36018 * 120.06990 * 179.97438 * 8 7 6 10 10 C 1.34656 * 116.99702 * 261.43593 * 9 8 7 11 11 O 1.21516 * 120.00009 * 5.53621 * 10 9 8 12 12 N 1.34773 * 119.99763 * 185.52982 * 10 9 8 13 13 C 1.47071 * 136.05787 * 359.63149 * 12 10 9 14 14 C 1.53757 * 87.88781 * 152.96511 * 13 12 10 15 15 C 1.50696 * 114.26725 * 139.79440 * 14 13 12 16 16 H 1.08005 * 119.99894 * 266.47314 * 15 14 13 17 17 C 1.37869 * 120.00388 * 86.47552 * 15 14 13 18 18 N 1.31515 * 120.00579 * 180.02562 * 17 15 14 19 19 Si 1.86801 * 119.99763 * 359.97438 * 17 15 14 20 20 H 1.48493 * 109.47180 * 90.00497 * 19 17 15 21 21 H 1.48501 * 109.47021 * 210.00053 * 19 17 15 22 22 H 1.48503 * 109.47248 * 329.99990 * 19 17 15 23 23 C 1.47071 * 136.05653 * 180.02562 * 12 10 9 24 24 H 1.08997 * 109.47163 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.46781 * 300.00189 * 1 2 3 26 26 H 1.08996 * 109.47267 * 59.99801 * 1 2 3 27 27 H 1.08004 * 120.00368 * 359.97438 * 4 3 2 28 28 H 1.08000 * 119.92656 * 180.25563 * 5 4 3 29 29 H 1.08002 * 119.92567 * 179.97438 * 6 5 4 30 30 H 1.07994 * 120.00592 * 180.02562 * 7 6 5 31 31 H 1.09005 * 113.46474 * 267.69403 * 13 12 10 32 32 H 1.09001 * 113.46887 * 38.13653 * 13 12 10 33 33 H 1.09000 * 114.39021 * 272.68016 * 14 13 12 34 34 H 0.96996 * 120.00639 * 179.97438 * 18 17 15 35 35 H 1.08998 * 113.46242 * 321.86063 * 23 12 10 36 36 H 1.08994 * 113.46897 * 92.24605 * 23 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 1.2931 2.3747 -0.0005 5 6 1.9222 3.6055 0.0052 6 6 3.3029 3.6796 0.0057 7 6 4.0603 2.5233 0.0010 8 6 3.4358 1.2861 -0.0052 9 8 4.1796 0.1473 -0.0103 10 6 4.3647 -0.4564 -1.1996 11 8 3.9629 0.0710 -2.2179 12 7 4.9959 -1.6457 -1.2605 13 6 5.6114 -2.5686 -0.2949 14 6 5.3053 -3.7108 -1.2777 15 6 6.4024 -4.7370 -1.3958 16 1 7.1503 -4.6414 -2.1691 17 6 6.4516 -5.7980 -0.5167 18 7 7.4093 -6.6933 -0.6194 19 14 5.1584 -5.9629 0.8212 20 1 4.0159 -6.7615 0.3096 21 1 5.7503 -6.6448 2.0002 22 1 4.6813 -4.6136 1.2176 23 6 5.3782 -2.5884 -2.3226 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 0.2144 2.3197 -0.0014 28 1 1.3341 4.5113 0.0090 29 1 3.7908 4.6432 0.0098 30 1 5.1385 2.5839 0.0018 31 1 6.6777 -2.3960 -0.1487 32 1 5.0632 -2.6434 0.6442 33 1 4.3146 -4.1504 -1.1623 34 1 7.4441 -7.4396 -0.0007 35 1 4.6313 -2.6801 -3.1111 36 1 6.3826 -2.4205 -2.7111 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001195229403.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:40 Heat of formation + Delta-G solvation = -32.525663 kcal Electronic energy + Delta-G solvation = -21239.732601 eV Core-core repulsion = 17884.870746 eV Total energy + Delta-G solvation = -3354.861855 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.09401 -39.67089 -38.45556 -37.33857 -35.95216 -32.68017 -30.81494 -30.28690 -29.38101 -27.41891 -25.63668 -25.12029 -23.05202 -22.42936 -20.93465 -19.38846 -18.36076 -17.53844 -17.33927 -16.96266 -16.74394 -15.81856 -15.47978 -15.17730 -14.70664 -14.46205 -14.17083 -13.79617 -13.53237 -13.16040 -12.77854 -12.46756 -12.29895 -12.10016 -11.85316 -11.65995 -11.42008 -11.28389 -10.88393 -10.70509 -10.67954 -10.28595 -10.06558 -9.63109 -9.27979 -9.02593 -8.67265 -8.29597 -8.16719 -6.21878 -4.25300 0.93897 1.22381 2.51094 3.07519 3.22897 3.26578 3.32377 3.35352 3.59225 4.31617 4.32494 4.61082 4.71898 4.90087 4.99268 5.00868 5.05902 5.17219 5.32006 5.35489 5.52434 5.72719 5.90077 5.99028 6.03292 6.07361 6.20469 6.24922 6.30586 6.41271 6.43633 6.53694 6.81855 7.12027 7.25792 7.52387 8.25696 8.36199 8.74446 8.81083 9.38897 10.89768 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.027364 B = 0.004471 C = 0.004164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.993765 B = 6261.576216 C = 6721.997899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.305 6.305 3 C 0.127 3.873 4 C -0.201 4.201 5 C -0.081 4.081 6 C -0.146 4.146 7 C -0.080 4.080 8 C 0.081 3.919 9 O -0.296 6.296 10 C 0.668 3.332 11 O -0.576 6.576 12 N -0.629 5.629 13 C 0.089 3.911 14 C -0.005 4.005 15 C -0.513 4.513 16 H 0.082 0.918 17 C 0.079 3.921 18 N -0.891 5.891 19 Si 0.873 3.127 20 H -0.275 1.275 21 H -0.286 1.286 22 H -0.259 1.259 23 C 0.139 3.861 24 H 0.102 0.898 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.134 0.866 28 H 0.129 0.871 29 H 0.132 0.868 30 H 0.137 0.863 31 H 0.087 0.913 32 H 0.063 0.937 33 H 0.064 0.936 34 H 0.267 0.733 35 H 0.066 0.934 36 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.864 17.233 3.749 21.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.218 6.218 3 C 0.081 3.919 4 C -0.219 4.219 5 C -0.099 4.099 6 C -0.164 4.164 7 C -0.098 4.098 8 C 0.037 3.963 9 O -0.209 6.209 10 C 0.424 3.576 11 O -0.465 6.465 12 N -0.370 5.370 13 C -0.034 4.034 14 C -0.025 4.025 15 C -0.551 4.551 16 H 0.100 0.900 17 C -0.125 4.125 18 N -0.527 5.527 19 Si 0.700 3.300 20 H -0.201 1.201 21 H -0.212 1.212 22 H -0.183 1.183 23 C 0.019 3.981 24 H 0.120 0.880 25 H 0.074 0.926 26 H 0.075 0.925 27 H 0.152 0.848 28 H 0.147 0.853 29 H 0.150 0.850 30 H 0.155 0.845 31 H 0.105 0.895 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.077 0.923 35 H 0.084 0.916 36 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -11.936 17.251 3.535 21.274 hybrid contribution -0.856 0.050 0.799 1.172 sum -12.792 17.301 4.334 21.948 Atomic orbital electron populations 1.23106 0.78209 1.04311 1.01169 1.86211 1.21518 1.26054 1.87969 1.19339 0.91367 0.85307 0.95934 1.21126 1.00100 0.91731 1.08989 1.20984 0.94675 0.96953 0.97266 1.20907 0.93718 0.97852 1.03952 1.21116 1.00903 0.90216 0.97600 1.17650 0.86042 0.85035 1.07524 1.84371 1.66487 1.36816 1.33212 1.17772 0.78782 0.79828 0.81194 1.90941 1.56482 1.64932 1.34130 1.48708 1.56596 1.15753 1.15925 1.24062 0.97829 0.86731 0.94729 1.20832 0.98806 0.91505 0.91330 1.20719 1.10804 1.06384 1.17210 0.90026 1.24981 0.95360 0.94982 0.97160 1.69884 1.32313 1.12962 1.37535 0.86917 0.82061 0.79272 0.81759 1.20080 1.21171 1.18278 1.23222 0.99508 0.83626 0.91751 0.87983 0.92567 0.92522 0.84837 0.85298 0.85038 0.84484 0.89486 0.91873 0.91838 0.92290 0.91563 0.89668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 9.81 101.05 0.99 1.27 16 2 O -0.31 -4.93 10.25 -34.16 -0.35 -5.28 16 3 C 0.13 1.99 6.67 -39.12 -0.26 1.73 16 4 C -0.20 -2.37 9.04 -39.46 -0.36 -2.73 16 5 C -0.08 -0.82 10.04 -39.58 -0.40 -1.22 16 6 C -0.15 -1.58 10.04 -39.58 -0.40 -1.98 16 7 C -0.08 -1.11 9.98 -39.46 -0.39 -1.50 16 8 C 0.08 1.39 4.97 -39.12 -0.19 1.20 16 9 O -0.30 -5.91 9.84 -30.28 -0.30 -6.20 16 10 C 0.67 14.49 8.84 54.05 0.48 14.97 16 11 O -0.58 -13.54 16.90 -19.28 -0.33 -13.87 16 12 N -0.63 -13.35 3.69 -190.86 -0.70 -14.05 16 13 C 0.09 1.86 7.66 -8.36 -0.06 1.79 16 14 C 0.00 -0.11 2.97 -91.11 -0.27 -0.38 16 15 C -0.51 -13.25 9.38 -34.45 -0.32 -13.57 16 16 H 0.08 2.26 8.06 -52.48 -0.42 1.84 16 17 C 0.08 2.12 5.47 -17.82 -0.10 2.02 16 18 N -0.89 -25.58 13.96 55.43 0.77 -24.80 16 19 Si 0.87 20.11 27.15 -169.99 -4.62 15.49 16 20 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 21 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 22 H -0.26 -5.68 5.72 56.52 0.32 -5.35 16 23 C 0.14 2.83 8.17 -8.48 -0.07 2.76 16 24 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 25 H 0.06 0.45 7.66 -51.93 -0.40 0.06 16 26 H 0.06 0.51 7.66 -51.93 -0.40 0.11 16 27 H 0.13 1.19 6.30 -52.48 -0.33 0.86 16 28 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 29 H 0.13 1.02 8.06 -52.49 -0.42 0.59 16 30 H 0.14 1.69 8.06 -52.49 -0.42 1.26 16 31 H 0.09 1.76 8.10 -51.93 -0.42 1.34 16 32 H 0.06 1.30 7.15 -51.93 -0.37 0.93 16 33 H 0.06 1.42 7.03 -51.93 -0.37 1.05 16 34 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 35 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 36 H 0.09 1.65 8.10 -51.93 -0.42 1.23 16 LS Contribution 313.58 15.07 4.73 4.73 Total: -1.00 -32.53 313.58 -6.60 -39.13 By element: Atomic # 1 Polarization: 4.94 SS G_CDS: -4.45 Total: 0.49 kcal Atomic # 6 Polarization: 5.72 SS G_CDS: -1.36 Total: 4.36 kcal Atomic # 7 Polarization: -38.93 SS G_CDS: 0.07 Total: -38.86 kcal Atomic # 8 Polarization: -24.37 SS G_CDS: -0.97 Total: -25.35 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -4.62 Total: 15.49 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -32.53 -6.60 -39.13 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001195229403.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.608 kcal (2) G-P(sol) polarization free energy of solvation -32.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds