Wall clock time and date at job start Mon Mar 30 2020 02:09:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35975 * 117.00188 * 2 1 4 4 C 1.38582 * 120.07211 * 359.97438 * 3 2 1 5 5 C 1.38228 * 119.99747 * 179.72390 * 4 3 2 6 6 C 1.38263 * 120.14743 * 0.27831 * 5 4 3 7 7 C 1.38227 * 120.15224 * 359.97438 * 6 5 4 8 8 C 1.38582 * 119.99568 * 0.04350 * 7 6 5 9 9 O 1.36018 * 120.06990 * 179.97438 * 8 7 6 10 10 C 1.34656 * 116.99702 * 261.43593 * 9 8 7 11 11 O 1.21516 * 120.00009 * 5.53621 * 10 9 8 12 12 N 1.34773 * 119.99763 * 185.52982 * 10 9 8 13 13 C 1.47071 * 136.05787 * 359.63149 * 12 10 9 14 14 C 1.53757 * 87.88781 * 152.96511 * 13 12 10 15 15 C 1.50696 * 114.26725 * 139.79440 * 14 13 12 16 16 H 1.08005 * 119.99894 * 266.47314 * 15 14 13 17 17 C 1.37869 * 120.00388 * 86.47552 * 15 14 13 18 18 N 1.31515 * 120.00579 * 180.02562 * 17 15 14 19 19 Si 1.86801 * 119.99763 * 359.97438 * 17 15 14 20 20 H 1.48493 * 109.47180 * 90.00497 * 19 17 15 21 21 H 1.48501 * 109.47021 * 210.00053 * 19 17 15 22 22 H 1.48503 * 109.47248 * 329.99990 * 19 17 15 23 23 C 1.47071 * 136.05653 * 180.02562 * 12 10 9 24 24 H 1.08997 * 109.47163 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.46781 * 300.00189 * 1 2 3 26 26 H 1.08996 * 109.47267 * 59.99801 * 1 2 3 27 27 H 1.08004 * 120.00368 * 359.97438 * 4 3 2 28 28 H 1.08000 * 119.92656 * 180.25563 * 5 4 3 29 29 H 1.08002 * 119.92567 * 179.97438 * 6 5 4 30 30 H 1.07994 * 120.00592 * 180.02562 * 7 6 5 31 31 H 1.09005 * 113.46474 * 267.69403 * 13 12 10 32 32 H 1.09001 * 113.46887 * 38.13653 * 13 12 10 33 33 H 1.09000 * 114.39021 * 272.68016 * 14 13 12 34 34 H 0.96996 * 120.00639 * 179.97438 * 18 17 15 35 35 H 1.08998 * 113.46242 * 321.86063 * 23 12 10 36 36 H 1.08994 * 113.46897 * 92.24605 * 23 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 1.2931 2.3747 -0.0005 5 6 1.9222 3.6055 0.0052 6 6 3.3029 3.6796 0.0057 7 6 4.0603 2.5233 0.0010 8 6 3.4358 1.2861 -0.0052 9 8 4.1796 0.1473 -0.0103 10 6 4.3647 -0.4564 -1.1996 11 8 3.9629 0.0710 -2.2179 12 7 4.9959 -1.6457 -1.2605 13 6 5.6114 -2.5686 -0.2949 14 6 5.3053 -3.7108 -1.2777 15 6 6.4024 -4.7370 -1.3958 16 1 7.1503 -4.6414 -2.1691 17 6 6.4516 -5.7980 -0.5167 18 7 7.4093 -6.6933 -0.6194 19 14 5.1584 -5.9629 0.8212 20 1 4.0159 -6.7615 0.3096 21 1 5.7503 -6.6448 2.0002 22 1 4.6813 -4.6136 1.2176 23 6 5.3782 -2.5884 -2.3226 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 0.2144 2.3197 -0.0014 28 1 1.3341 4.5113 0.0090 29 1 3.7908 4.6432 0.0098 30 1 5.1385 2.5839 0.0018 31 1 6.6777 -2.3960 -0.1487 32 1 5.0632 -2.6434 0.6442 33 1 4.3146 -4.1504 -1.1623 34 1 7.4441 -7.4396 -0.0007 35 1 4.6313 -2.6801 -3.1111 36 1 6.3826 -2.4205 -2.7111 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001195229403.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:39 Heat of formation + Delta-G solvation = -53.550302 kcal Electronic energy + Delta-G solvation = -21240.644297 eV Core-core repulsion = 17884.870746 eV Total energy + Delta-G solvation = -3355.773552 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.40619 -41.01586 -39.92030 -38.40530 -37.47586 -34.70646 -32.06384 -31.35942 -30.78773 -28.27691 -27.41210 -26.86277 -24.30849 -23.37184 -22.40020 -21.02473 -19.56487 -19.29147 -18.85243 -18.44576 -17.97419 -16.88069 -16.76951 -16.47616 -16.14419 -15.79718 -15.44166 -15.15768 -14.96678 -14.71613 -14.42276 -13.62351 -13.52733 -13.51573 -13.12999 -13.04137 -12.68555 -12.58203 -12.37631 -12.14083 -12.01144 -11.87160 -11.85143 -11.43631 -11.23946 -10.69322 -10.01858 -9.85546 -9.29205 -8.28763 -6.36441 -0.11216 0.28412 1.10888 1.40789 1.44921 1.54178 1.58580 2.21903 2.37889 2.56094 2.97033 3.03040 3.72915 3.83131 3.92351 4.09817 4.18225 4.22234 4.29770 4.31756 4.33839 4.39795 4.52795 4.59251 4.61921 4.71574 4.73979 4.84339 5.10048 5.18434 5.30560 5.36492 5.40120 5.56986 5.70904 6.26413 6.27323 6.61822 6.71546 7.14966 7.31341 8.86207 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.027364 B = 0.004471 C = 0.004164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.993765 B = 6261.576216 C = 6721.997899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.344 6.344 3 C 0.104 3.896 4 C -0.200 4.200 5 C -0.066 4.066 6 C -0.140 4.140 7 C -0.092 4.092 8 C 0.022 3.978 9 O -0.301 6.301 10 C 0.666 3.334 11 O -0.600 6.600 12 N -0.634 5.634 13 C 0.098 3.902 14 C -0.008 4.008 15 C -0.511 4.511 16 H 0.051 0.949 17 C 0.028 3.972 18 N -0.938 5.938 19 Si 0.934 3.066 20 H -0.270 1.270 21 H -0.286 1.286 22 H -0.241 1.241 23 C 0.142 3.858 24 H 0.110 0.890 25 H 0.079 0.921 26 H 0.068 0.932 27 H 0.164 0.836 28 H 0.174 0.826 29 H 0.168 0.832 30 H 0.141 0.859 31 H 0.092 0.908 32 H 0.069 0.931 33 H 0.068 0.932 34 H 0.269 0.731 35 H 0.075 0.925 36 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.206 19.927 4.758 24.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.258 6.258 3 C 0.058 3.942 4 C -0.218 4.218 5 C -0.084 4.084 6 C -0.158 4.158 7 C -0.110 4.110 8 C -0.021 4.021 9 O -0.213 6.213 10 C 0.424 3.576 11 O -0.492 6.492 12 N -0.374 5.374 13 C -0.024 4.024 14 C -0.028 4.028 15 C -0.549 4.549 16 H 0.069 0.931 17 C -0.172 4.172 18 N -0.577 5.577 19 Si 0.757 3.243 20 H -0.195 1.195 21 H -0.212 1.212 22 H -0.164 1.164 23 C 0.022 3.978 24 H 0.128 0.872 25 H 0.098 0.902 26 H 0.086 0.914 27 H 0.181 0.819 28 H 0.191 0.809 29 H 0.186 0.814 30 H 0.159 0.841 31 H 0.110 0.890 32 H 0.087 0.913 33 H 0.086 0.914 34 H 0.078 0.922 35 H 0.094 0.906 36 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -14.294 19.973 4.552 24.979 hybrid contribution -0.173 -0.637 0.433 0.790 sum -14.467 19.336 4.985 24.658 Atomic orbital electron populations 1.23404 0.75784 1.05548 1.02848 1.86140 1.24266 1.27100 1.88299 1.19647 0.91238 0.86434 0.96862 1.21553 1.01511 0.91022 1.07735 1.21575 0.94764 0.97927 0.94122 1.21385 0.94247 0.98136 1.02052 1.21382 1.01620 0.90275 0.97749 1.18306 0.87120 0.84991 1.11653 1.84390 1.66966 1.38145 1.31812 1.17916 0.78217 0.79709 0.81759 1.90894 1.57402 1.65612 1.35259 1.48669 1.56700 1.16061 1.15987 1.23889 0.98239 0.85779 0.94476 1.20721 0.97648 0.91269 0.93139 1.20846 1.10831 1.07216 1.16021 0.93117 1.25750 0.97265 0.94653 0.99505 1.70010 1.34593 1.14033 1.39066 0.85949 0.79454 0.80038 0.78823 1.19541 1.21167 1.16440 1.23168 1.00275 0.82728 0.91600 0.87168 0.90213 0.91352 0.81891 0.80861 0.81438 0.84120 0.89011 0.91297 0.91393 0.92178 0.90621 0.89016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 9.81 113.37 1.11 1.45 16 2 O -0.34 -10.97 10.25 -79.41 -0.81 -11.78 16 3 C 0.10 3.18 6.67 22.57 0.15 3.33 16 4 C -0.20 -4.10 9.04 22.35 0.20 -3.90 16 5 C -0.07 -1.05 10.04 22.27 0.22 -0.83 16 6 C -0.14 -2.56 10.04 22.27 0.22 -2.33 16 7 C -0.09 -2.44 9.98 22.35 0.22 -2.22 16 8 C 0.02 0.75 4.97 22.57 0.11 0.86 16 9 O -0.30 -12.16 9.84 4.68 0.05 -12.12 16 10 C 0.67 29.15 8.84 129.79 1.15 30.30 16 11 O -0.60 -28.53 16.90 19.79 0.33 -28.20 16 12 N -0.63 -26.79 3.69 -988.16 -3.64 -30.43 16 13 C 0.10 4.05 7.66 83.27 0.64 4.69 16 14 C -0.01 -0.35 2.97 -11.11 -0.03 -0.39 16 15 C -0.51 -26.78 9.38 25.60 0.24 -26.54 16 16 H 0.05 2.91 8.06 -2.91 -0.02 2.88 16 17 C 0.03 1.49 5.47 84.65 0.46 1.96 16 18 N -0.94 -55.09 13.96 21.44 0.30 -54.79 16 19 Si 0.93 41.24 27.15 68.60 1.86 43.11 16 20 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 21 H -0.29 -12.57 7.11 99.48 0.71 -11.86 16 22 H -0.24 -9.87 5.72 99.48 0.57 -9.30 16 23 C 0.14 5.78 8.17 83.19 0.68 6.46 16 24 H 0.11 1.81 8.14 -2.39 -0.02 1.79 16 25 H 0.08 1.08 7.66 -2.39 -0.02 1.06 16 26 H 0.07 1.09 7.66 -2.39 -0.02 1.07 16 27 H 0.16 2.23 6.30 -2.91 -0.02 2.21 16 28 H 0.17 1.24 8.06 -2.91 -0.02 1.22 16 29 H 0.17 1.79 8.06 -2.91 -0.02 1.77 16 30 H 0.14 3.41 8.06 -2.91 -0.02 3.39 16 31 H 0.09 3.68 8.10 -2.38 -0.02 3.66 16 32 H 0.07 2.76 7.15 -2.39 -0.02 2.74 16 33 H 0.07 2.96 7.03 -2.39 -0.02 2.94 16 34 H 0.27 14.81 8.31 -92.71 -0.77 14.04 16 35 H 0.08 2.91 8.14 -2.39 -0.02 2.89 16 36 H 0.09 3.58 8.10 -2.39 -0.02 3.56 16 Total: -1.00 -72.69 313.58 4.42 -68.27 By element: Atomic # 1 Polarization: 12.15 SS G_CDS: 0.95 Total: 13.10 kcal Atomic # 6 Polarization: 7.46 SS G_CDS: 5.38 Total: 12.84 kcal Atomic # 7 Polarization: -81.88 SS G_CDS: -3.34 Total: -85.22 kcal Atomic # 8 Polarization: -51.66 SS G_CDS: -0.43 Total: -52.10 kcal Atomic # 14 Polarization: 41.24 SS G_CDS: 1.86 Total: 43.11 kcal Total: -72.69 4.42 -68.27 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001195229403.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.716 kcal (2) G-P(sol) polarization free energy of solvation -72.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds