Wall clock time and date at job start Mon Mar 30 2020 01:56:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 S 1.81401 * 109.47429 * 2 1 4 4 O 1.42098 * 108.57500 * 65.51363 * 3 2 1 5 5 O 1.42092 * 108.57885 * 294.48752 * 3 2 1 6 6 C 1.81397 * 101.92149 * 179.97438 * 3 2 1 7 7 C 1.53004 * 109.47231 * 180.02562 * 6 3 2 8 8 O 1.42894 * 109.47526 * 180.02562 * 7 6 3 9 9 C 1.42897 * 114.00388 * 180.02562 * 8 7 6 10 10 H 1.09000 * 110.88557 * 32.42445 * 9 8 7 11 11 C 1.55159 * 111.04153 * 156.33047 * 9 8 7 12 12 C 1.54318 * 102.94169 * 153.58854 * 11 9 8 13 13 N 1.47292 * 107.31103 * 337.81949 * 12 11 9 14 14 C 1.36935 * 125.79485 * 178.92456 * 13 12 11 15 15 H 1.08000 * 119.99782 * 174.82802 * 14 13 12 16 16 C 1.38813 * 119.99748 * 354.82496 * 14 13 12 17 17 N 1.31620 * 120.00341 * 7.02995 * 16 14 13 18 18 Si 1.86808 * 119.99539 * 187.02565 * 16 14 13 19 19 H 1.48502 * 109.46896 * 94.99260 * 18 16 14 20 20 H 1.48501 * 109.46951 * 214.98619 * 18 16 14 21 21 H 1.48492 * 109.47136 * 334.98799 * 18 16 14 22 22 C 1.47424 * 108.55382 * 358.92245 * 13 12 11 23 23 H 1.08997 * 109.47488 * 300.00026 * 1 2 3 24 24 H 1.09007 * 109.47290 * 60.00110 * 1 2 3 25 25 H 1.08999 * 109.47556 * 179.97438 * 1 2 3 26 26 H 1.09006 * 109.47424 * 239.99766 * 2 1 3 27 27 H 1.08997 * 109.47156 * 120.00463 * 2 1 3 28 28 H 1.08995 * 109.47373 * 60.00241 * 6 3 2 29 29 H 1.09004 * 109.47470 * 299.99765 * 6 3 2 30 30 H 1.09005 * 109.47017 * 59.99705 * 7 6 3 31 31 H 1.09004 * 109.46938 * 300.00590 * 7 6 3 32 32 H 1.08999 * 110.71715 * 271.95425 * 11 9 8 33 33 H 1.08999 * 110.71645 * 35.22751 * 11 9 8 34 34 H 1.09004 * 109.88141 * 97.22592 * 12 11 9 35 35 H 1.09001 * 109.88609 * 218.23118 * 12 11 9 36 36 H 0.96997 * 119.99818 * 179.97438 * 17 16 14 37 37 H 1.08992 * 110.36982 * 265.26424 * 22 13 12 38 38 H 1.09001 * 110.36388 * 143.04866 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 16 2.1347 1.7102 0.0000 4 8 1.7592 2.3231 1.2258 5 8 1.7593 2.3232 -1.2257 6 6 3.9329 1.4718 0.0008 7 6 4.6281 2.8348 0.0015 8 8 6.0447 2.6470 0.0016 9 6 6.7925 3.8647 0.0028 10 1 6.2632 4.6452 0.5495 11 6 8.2141 3.6448 0.5842 12 6 9.0402 4.7592 -0.0920 13 7 8.3243 5.1531 -1.3176 14 6 8.7154 6.1291 -2.1949 15 1 8.1635 6.2853 -3.1099 16 6 9.8212 6.9176 -1.9080 17 7 10.5750 6.6398 -0.8654 18 14 10.2394 8.3731 -3.0018 19 1 9.6515 9.6096 -2.4265 20 1 11.7146 8.5200 -3.0876 21 1 9.6846 8.1468 -4.3604 22 6 7.1145 4.3200 -1.4425 23 1 -0.3634 0.5138 0.8899 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 4.2260 0.9146 -0.8890 29 1 4.2253 0.9148 0.8910 30 1 4.3350 3.3917 0.8916 31 1 4.3358 3.3922 -0.8884 32 1 8.2115 3.7697 1.6670 33 1 8.5953 2.6614 0.3092 34 1 9.1265 5.6149 0.5776 35 1 10.0323 4.3844 -0.3439 36 1 11.3479 7.1907 -0.6652 37 1 7.3125 3.4562 -2.0770 38 1 6.2902 4.9067 -1.8479 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001222553699.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:58 Heat of formation + Delta-G solvation = -90.962335 kcal Electronic energy + Delta-G solvation = -19649.995545 eV Core-core repulsion = 16428.043637 eV Total energy + Delta-G solvation = -3221.951908 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -38.50085 -37.25273 -36.33809 -36.09304 -33.58413 -32.59162 -31.43658 -29.13862 -27.06598 -25.03776 -24.32270 -22.95281 -20.41324 -20.08881 -19.12945 -17.54894 -16.95342 -16.71405 -16.32430 -16.03097 -15.49528 -14.70340 -14.68779 -14.40924 -14.08239 -13.57184 -13.25305 -13.01091 -12.92090 -12.36077 -12.34719 -12.26092 -12.09630 -11.98534 -11.85992 -11.48593 -11.27333 -10.95545 -10.92998 -10.77753 -10.70490 -10.22926 -10.08748 -9.82600 -9.72594 -9.19466 -8.58584 -6.84785 -5.73272 -3.06060 -0.39908 2.41507 3.17027 3.41041 3.46207 3.48236 3.67454 3.86885 4.20236 4.26212 4.48256 4.56421 4.58012 4.76010 5.11709 5.15043 5.21923 5.30287 5.37399 5.44288 5.50040 5.50980 5.59194 5.72983 5.80917 6.21853 6.44340 6.49908 6.64458 6.66950 7.47848 7.53532 7.59586 7.80953 8.23691 9.19994 9.80426 10.46589 11.39190 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.040814 B = 0.003203 C = 0.003060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.882493 B = 8739.102785 C = 9147.313320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.612 4.612 3 S 2.423 3.577 4 O -0.935 6.935 5 O -0.932 6.932 6 C -0.614 4.614 7 C 0.074 3.926 8 O -0.371 6.371 9 C 0.067 3.933 10 H 0.071 0.929 11 C -0.136 4.136 12 C 0.177 3.823 13 N -0.604 5.604 14 C -0.229 4.229 15 H 0.079 0.921 16 C -0.007 4.007 17 N -0.921 5.921 18 Si 0.912 3.088 19 H -0.288 1.288 20 H -0.291 1.291 21 H -0.280 1.280 22 C 0.116 3.884 23 H 0.073 0.927 24 H 0.074 0.926 25 H 0.080 0.920 26 H 0.133 0.867 27 H 0.133 0.867 28 H 0.140 0.860 29 H 0.139 0.861 30 H 0.063 0.937 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.067 0.933 34 H 0.051 0.949 35 H 0.045 0.955 36 H 0.253 0.747 37 H 0.028 0.972 38 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.167 -15.097 4.185 23.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.741 4.741 3 S 2.603 3.397 4 O -0.932 6.932 5 O -0.929 6.929 6 C -0.742 4.742 7 C -0.004 4.004 8 O -0.290 6.290 9 C 0.009 3.991 10 H 0.089 0.911 11 C -0.174 4.174 12 C 0.052 3.948 13 N -0.332 5.332 14 C -0.358 4.358 15 H 0.097 0.903 16 C -0.204 4.204 17 N -0.568 5.568 18 Si 0.743 3.257 19 H -0.216 1.216 20 H -0.217 1.217 21 H -0.206 1.206 22 C -0.011 4.011 23 H 0.092 0.908 24 H 0.093 0.907 25 H 0.099 0.901 26 H 0.152 0.848 27 H 0.151 0.849 28 H 0.158 0.842 29 H 0.157 0.843 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.086 0.914 34 H 0.069 0.931 35 H 0.064 0.936 36 H 0.063 0.937 37 H 0.045 0.955 38 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -17.373 -14.342 4.164 22.909 hybrid contribution 0.764 0.077 -0.544 0.941 sum -16.609 -14.265 3.620 22.191 Atomic orbital electron populations 1.21519 0.90286 1.04873 1.03871 1.30194 1.07531 1.24699 1.11722 1.08007 0.77839 0.78285 0.75533 1.93599 1.80951 1.73034 1.45604 1.93610 1.80877 1.72957 1.45504 1.30458 1.23840 1.07327 1.12573 1.21955 0.84140 0.92411 1.01885 1.87892 1.14770 1.31152 1.95149 1.23543 0.92405 0.85006 0.98147 0.91122 1.22978 0.93548 1.01314 0.99596 1.21233 0.93356 0.92845 0.87369 1.44412 1.22353 1.40624 1.25782 1.19079 1.09929 1.07258 0.99490 0.90290 1.24839 0.97765 0.99496 0.98270 1.69965 1.17816 1.39993 1.29050 0.86090 0.77310 0.82767 0.79573 1.21562 1.21736 1.20578 1.21954 0.90771 0.94484 0.93891 0.90754 0.90721 0.90062 0.84820 0.84876 0.84180 0.84310 0.91849 0.91604 0.91677 0.91438 0.93101 0.93635 0.93682 0.95450 0.94206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.79 9.92 37.15 0.37 -0.42 16 2 C -0.61 -2.88 6.52 37.15 0.24 -2.64 16 3 S 2.42 20.68 4.72 -107.50 -0.51 20.17 16 4 O -0.93 -11.14 18.10 -57.83 -1.05 -12.19 16 5 O -0.93 -11.44 18.10 -57.83 -1.05 -12.49 16 6 C -0.61 -5.27 6.18 37.16 0.23 -5.04 16 7 C 0.07 0.97 5.83 37.16 0.22 1.19 16 8 O -0.37 -6.11 10.16 -35.23 -0.36 -6.47 16 9 C 0.07 1.27 3.49 -24.58 -0.09 1.18 16 10 H 0.07 1.28 7.90 -51.93 -0.41 0.87 16 11 C -0.14 -2.66 6.69 -24.90 -0.17 -2.82 16 12 C 0.18 4.37 5.39 -2.92 -0.02 4.36 16 13 N -0.60 -15.93 3.40 -169.86 -0.58 -16.51 16 14 C -0.23 -6.54 10.27 -15.06 -0.15 -6.69 16 15 H 0.08 2.17 7.84 -52.49 -0.41 1.76 16 16 C -0.01 -0.21 5.48 -17.43 -0.10 -0.31 16 17 N -0.92 -27.30 10.38 55.49 0.58 -26.72 16 18 Si 0.91 22.31 29.56 -169.99 -5.02 17.28 16 19 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 20 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 21 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 22 C 0.12 2.53 6.96 -2.53 -0.02 2.51 16 23 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 24 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 25 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 26 H 0.13 0.37 8.14 -51.92 -0.42 -0.05 16 27 H 0.13 0.35 8.14 -51.93 -0.42 -0.08 16 28 H 0.14 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.14 0.89 8.14 -51.92 -0.42 0.47 16 30 H 0.06 0.78 8.11 -51.93 -0.42 0.35 16 31 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 34 H 0.05 1.37 7.31 -51.93 -0.38 0.99 16 35 H 0.05 1.23 7.62 -51.93 -0.40 0.84 16 36 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 37 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 327.24 15.07 4.93 4.93 Total: -1.00 -36.54 327.24 -8.76 -45.29 By element: Atomic # 1 Polarization: 1.60 SS G_CDS: -6.23 Total: -4.63 kcal Atomic # 6 Polarization: -9.20 SS G_CDS: 0.52 Total: -8.68 kcal Atomic # 7 Polarization: -43.23 SS G_CDS: 0.00 Total: -43.23 kcal Atomic # 8 Polarization: -28.70 SS G_CDS: -2.45 Total: -31.15 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.28 kcal Atomic # 16 Polarization: 20.68 SS G_CDS: -0.51 Total: 20.17 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -36.54 -8.76 -45.29 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222553699.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.668 kcal (2) G-P(sol) polarization free energy of solvation -36.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds