Wall clock time and date at job start Mon Mar 30 2020 01:56:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 S 1.81401 * 109.47429 * 2 1 4 4 O 1.42098 * 108.57500 * 65.51363 * 3 2 1 5 5 O 1.42092 * 108.57885 * 294.48752 * 3 2 1 6 6 C 1.81397 * 101.92149 * 179.97438 * 3 2 1 7 7 C 1.53004 * 109.47231 * 180.02562 * 6 3 2 8 8 O 1.42894 * 109.47526 * 180.02562 * 7 6 3 9 9 C 1.42897 * 114.00388 * 180.02562 * 8 7 6 10 10 H 1.09000 * 110.88557 * 32.42445 * 9 8 7 11 11 C 1.55159 * 111.04153 * 156.33047 * 9 8 7 12 12 C 1.54318 * 102.94169 * 153.58854 * 11 9 8 13 13 N 1.47292 * 107.31103 * 337.81949 * 12 11 9 14 14 C 1.36935 * 125.79485 * 178.92456 * 13 12 11 15 15 H 1.08000 * 119.99782 * 174.82802 * 14 13 12 16 16 C 1.38813 * 119.99748 * 354.82496 * 14 13 12 17 17 N 1.31620 * 120.00341 * 7.02995 * 16 14 13 18 18 Si 1.86808 * 119.99539 * 187.02565 * 16 14 13 19 19 H 1.48502 * 109.46896 * 94.99260 * 18 16 14 20 20 H 1.48501 * 109.46951 * 214.98619 * 18 16 14 21 21 H 1.48492 * 109.47136 * 334.98799 * 18 16 14 22 22 C 1.47424 * 108.55382 * 358.92245 * 13 12 11 23 23 H 1.08997 * 109.47488 * 300.00026 * 1 2 3 24 24 H 1.09007 * 109.47290 * 60.00110 * 1 2 3 25 25 H 1.08999 * 109.47556 * 179.97438 * 1 2 3 26 26 H 1.09006 * 109.47424 * 239.99766 * 2 1 3 27 27 H 1.08997 * 109.47156 * 120.00463 * 2 1 3 28 28 H 1.08995 * 109.47373 * 60.00241 * 6 3 2 29 29 H 1.09004 * 109.47470 * 299.99765 * 6 3 2 30 30 H 1.09005 * 109.47017 * 59.99705 * 7 6 3 31 31 H 1.09004 * 109.46938 * 300.00590 * 7 6 3 32 32 H 1.08999 * 110.71715 * 271.95425 * 11 9 8 33 33 H 1.08999 * 110.71645 * 35.22751 * 11 9 8 34 34 H 1.09004 * 109.88141 * 97.22592 * 12 11 9 35 35 H 1.09001 * 109.88609 * 218.23118 * 12 11 9 36 36 H 0.96997 * 119.99818 * 179.97438 * 17 16 14 37 37 H 1.08992 * 110.36982 * 265.26424 * 22 13 12 38 38 H 1.09001 * 110.36388 * 143.04866 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 16 2.1347 1.7102 0.0000 4 8 1.7592 2.3231 1.2258 5 8 1.7593 2.3232 -1.2257 6 6 3.9329 1.4718 0.0008 7 6 4.6281 2.8348 0.0015 8 8 6.0447 2.6470 0.0016 9 6 6.7925 3.8647 0.0028 10 1 6.2632 4.6452 0.5495 11 6 8.2141 3.6448 0.5842 12 6 9.0402 4.7592 -0.0920 13 7 8.3243 5.1531 -1.3176 14 6 8.7154 6.1291 -2.1949 15 1 8.1635 6.2853 -3.1099 16 6 9.8212 6.9176 -1.9080 17 7 10.5750 6.6398 -0.8654 18 14 10.2394 8.3731 -3.0018 19 1 9.6515 9.6096 -2.4265 20 1 11.7146 8.5200 -3.0876 21 1 9.6846 8.1468 -4.3604 22 6 7.1145 4.3200 -1.4425 23 1 -0.3634 0.5138 0.8899 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 4.2260 0.9146 -0.8890 29 1 4.2253 0.9148 0.8910 30 1 4.3350 3.3917 0.8916 31 1 4.3358 3.3922 -0.8884 32 1 8.2115 3.7697 1.6670 33 1 8.5953 2.6614 0.3092 34 1 9.1265 5.6149 0.5776 35 1 10.0323 4.3844 -0.3439 36 1 11.3479 7.1907 -0.6652 37 1 7.3125 3.4562 -2.0770 38 1 6.2902 4.9067 -1.8479 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001222553699.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:57 Heat of formation + Delta-G solvation = -118.872204 kcal Electronic energy + Delta-G solvation = -19651.205808 eV Core-core repulsion = 16428.043637 eV Total energy + Delta-G solvation = -3223.162170 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.98685 -38.03080 -37.74819 -37.08007 -34.39576 -33.97879 -32.66232 -30.99254 -28.84045 -26.46548 -25.50253 -23.74633 -22.11695 -21.90655 -19.81789 -19.02181 -18.42339 -17.51022 -17.30963 -16.90126 -16.72248 -16.43823 -15.96568 -15.54814 -15.18289 -14.92450 -14.31543 -14.11772 -14.00243 -13.77627 -13.42360 -13.31413 -13.15191 -13.05783 -12.96318 -12.81991 -12.65317 -12.33913 -12.27033 -12.11287 -12.02898 -11.89920 -11.81154 -11.49124 -11.25719 -10.73001 -10.59851 -8.95963 -7.90062 -5.25851 -1.03432 1.45267 1.47586 1.56597 1.82310 2.30135 2.48996 2.87918 3.08686 3.29305 3.57430 3.72392 3.73160 3.79582 3.84269 3.99061 4.04072 4.13043 4.22457 4.45493 4.51466 4.57088 4.69456 4.77293 4.78577 4.90053 4.90328 4.98528 5.03208 5.16625 5.40888 5.58854 5.69162 6.07769 6.19555 7.04959 7.70509 8.35829 9.21228 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.040814 B = 0.003203 C = 0.003060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.882493 B = 8739.102785 C = 9147.313320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.583 4.583 3 S 2.421 3.579 4 O -0.978 6.978 5 O -0.980 6.980 6 C -0.608 4.608 7 C 0.053 3.947 8 O -0.371 6.371 9 C 0.082 3.918 10 H 0.078 0.922 11 C -0.122 4.122 12 C 0.183 3.817 13 N -0.626 5.626 14 C -0.249 4.249 15 H 0.082 0.918 16 C -0.063 4.063 17 N -0.949 5.949 18 Si 0.982 3.018 19 H -0.285 1.285 20 H -0.292 1.292 21 H -0.268 1.268 22 C 0.110 3.890 23 H 0.069 0.931 24 H 0.067 0.933 25 H 0.105 0.895 26 H 0.163 0.837 27 H 0.166 0.834 28 H 0.161 0.839 29 H 0.166 0.834 30 H 0.069 0.931 31 H 0.059 0.941 32 H 0.091 0.909 33 H 0.077 0.923 34 H 0.021 0.979 35 H 0.012 0.988 36 H 0.249 0.751 37 H 0.027 0.973 38 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.392 -17.140 4.258 25.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.716 4.716 3 S 2.607 3.393 4 O -0.975 6.975 5 O -0.978 6.978 6 C -0.735 4.735 7 C -0.025 4.025 8 O -0.289 6.289 9 C 0.024 3.976 10 H 0.096 0.904 11 C -0.160 4.160 12 C 0.058 3.942 13 N -0.354 5.354 14 C -0.378 4.378 15 H 0.100 0.900 16 C -0.256 4.256 17 N -0.598 5.598 18 Si 0.809 3.191 19 H -0.212 1.212 20 H -0.218 1.218 21 H -0.193 1.193 22 C -0.016 4.016 23 H 0.088 0.912 24 H 0.086 0.914 25 H 0.124 0.876 26 H 0.181 0.819 27 H 0.184 0.816 28 H 0.179 0.821 29 H 0.184 0.816 30 H 0.087 0.913 31 H 0.077 0.923 32 H 0.110 0.890 33 H 0.095 0.905 34 H 0.040 0.960 35 H 0.030 0.970 36 H 0.059 0.941 37 H 0.045 0.955 38 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -18.623 -16.363 4.232 25.149 hybrid contribution 1.061 0.591 -0.585 1.348 sum -17.562 -15.772 3.647 23.885 Atomic orbital electron populations 1.21714 0.90712 1.06258 1.03518 1.29972 1.06929 1.19801 1.14894 1.07819 0.77578 0.80230 0.73675 1.93543 1.81518 1.75689 1.46729 1.93549 1.81547 1.75741 1.46926 1.30421 1.22908 1.05135 1.15057 1.22302 0.82492 0.95662 1.02019 1.87872 1.16538 1.29494 1.95004 1.23204 0.92574 0.86212 0.95651 0.90418 1.22805 0.93059 0.99527 1.00627 1.21005 0.92986 0.93359 0.86830 1.44718 1.24029 1.40837 1.25854 1.19462 1.10112 1.08006 1.00188 0.90016 1.25712 0.97810 1.02137 0.99989 1.70173 1.18073 1.40822 1.30690 0.85020 0.76697 0.79070 0.78292 1.21220 1.21850 1.19252 1.22111 0.89305 0.93850 0.96285 0.91191 0.91368 0.87624 0.81871 0.81639 0.82095 0.81563 0.91282 0.92279 0.89040 0.90451 0.96048 0.96983 0.94125 0.95510 0.93846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.29 9.92 71.98 0.71 -0.57 16 2 C -0.58 -3.17 6.52 71.98 0.47 -2.70 16 3 S 2.42 37.59 4.72 -56.49 -0.27 37.33 16 4 O -0.98 -22.74 18.10 -127.37 -2.30 -25.05 16 5 O -0.98 -23.87 18.10 -127.37 -2.30 -26.18 16 6 C -0.61 -8.70 6.18 71.98 0.44 -8.25 16 7 C 0.05 1.30 5.83 71.98 0.42 1.72 16 8 O -0.37 -11.43 10.16 -148.98 -1.51 -12.94 16 9 C 0.08 3.01 3.49 31.99 0.11 3.12 16 10 H 0.08 2.73 7.90 -2.39 -0.02 2.71 16 11 C -0.12 -4.64 6.69 31.78 0.21 -4.43 16 12 C 0.18 9.28 5.39 86.68 0.47 9.75 16 13 N -0.63 -33.63 3.40 -691.31 -2.35 -35.99 16 14 C -0.25 -14.42 10.27 84.03 0.86 -13.56 16 15 H 0.08 4.54 7.84 -2.91 -0.02 4.51 16 16 C -0.06 -3.67 5.48 84.86 0.46 -3.20 16 17 N -0.95 -57.82 10.38 21.65 0.22 -57.60 16 18 Si 0.98 46.40 29.56 68.60 2.03 48.43 16 19 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 20 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 21 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 22 C 0.11 4.81 6.96 86.86 0.60 5.42 16 23 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 24 H 0.07 0.63 8.14 -2.38 -0.02 0.61 16 25 H 0.11 0.38 8.14 -2.39 -0.02 0.36 16 26 H 0.16 0.06 8.14 -2.39 -0.02 0.04 16 27 H 0.17 -0.04 8.14 -2.39 -0.02 -0.06 16 28 H 0.16 1.63 8.14 -2.39 -0.02 1.61 16 29 H 0.17 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.07 1.61 8.11 -2.38 -0.02 1.59 16 31 H 0.06 1.52 8.14 -2.38 -0.02 1.50 16 32 H 0.09 3.00 8.14 -2.39 -0.02 2.98 16 33 H 0.08 2.79 8.14 -2.39 -0.02 2.77 16 34 H 0.02 1.19 7.31 -2.38 -0.02 1.17 16 35 H 0.01 0.67 7.62 -2.39 -0.02 0.66 16 36 H 0.25 14.67 8.31 -92.71 -0.77 13.90 16 37 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 38 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 Total: -1.00 -81.52 327.24 -0.70 -82.22 By element: Atomic # 1 Polarization: 1.45 SS G_CDS: 1.02 Total: 2.47 kcal Atomic # 6 Polarization: -17.48 SS G_CDS: 4.77 Total: -12.70 kcal Atomic # 7 Polarization: -91.46 SS G_CDS: -2.13 Total: -93.58 kcal Atomic # 8 Polarization: -58.04 SS G_CDS: -6.12 Total: -64.16 kcal Atomic # 14 Polarization: 46.40 SS G_CDS: 2.03 Total: 48.43 kcal Atomic # 16 Polarization: 37.59 SS G_CDS: -0.27 Total: 37.33 kcal Total: -81.52 -0.70 -82.22 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222553699.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.654 kcal (2) G-P(sol) polarization free energy of solvation -81.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds