Wall clock time and date at job start Mon Mar 30 2020 01:47:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46900 * 109.47407 * 2 1 4 4 C 1.46891 * 110.99849 * 299.02471 * 3 2 1 5 5 C 1.50702 * 109.47323 * 293.94870 * 4 3 2 6 6 H 1.08001 * 119.99848 * 0.02562 * 5 4 3 7 7 C 1.37868 * 120.00258 * 180.02562 * 5 4 3 8 8 N 1.31519 * 120.00365 * 179.97438 * 7 5 4 9 9 Si 1.86800 * 120.00011 * 0.02562 * 7 5 4 10 10 H 1.48505 * 109.47498 * 90.00068 * 9 7 5 11 11 H 1.48507 * 109.47261 * 209.99694 * 9 7 5 12 12 H 1.48498 * 109.47438 * 329.99996 * 9 7 5 13 13 C 1.46907 * 110.99486 * 62.97418 * 3 2 1 14 14 C 1.50708 * 109.46908 * 71.55294 * 13 3 2 15 15 C 1.34510 * 125.79317 * 89.28823 * 14 13 3 16 16 C 1.41376 * 106.84038 * 179.97438 * 15 14 13 17 17 C 1.34509 * 106.84202 * 0.02562 * 16 15 14 18 18 C 1.50709 * 125.78828 * 180.02562 * 17 16 15 19 19 F 1.39900 * 109.46982 * 90.00241 * 18 17 16 20 20 F 1.39898 * 109.46634 * 209.99870 * 18 17 16 21 21 F 1.39897 * 109.47186 * 329.99840 * 18 17 16 22 22 O 1.34298 * 108.42181 * 359.73512 * 17 16 15 23 23 H 1.08999 * 109.47050 * 58.84017 * 1 2 3 24 24 H 1.09002 * 109.47195 * 178.83607 * 1 2 3 25 25 H 1.09000 * 109.47371 * 298.83981 * 1 2 3 26 26 H 1.09006 * 109.47308 * 239.99703 * 2 1 3 27 27 H 1.09005 * 109.47124 * 120.00633 * 2 1 3 28 28 H 1.09000 * 109.47437 * 53.95558 * 4 3 2 29 29 H 1.09009 * 109.46931 * 173.95264 * 4 3 2 30 30 H 0.96992 * 120.00338 * 179.97438 * 8 7 5 31 31 H 1.08997 * 109.46463 * 191.54533 * 13 3 2 32 32 H 1.08996 * 109.47416 * 311.55368 * 13 3 2 33 33 H 1.08003 * 126.57709 * 359.96992 * 15 14 13 34 34 H 1.08007 * 126.57769 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5679 2.1030 -1.1991 5 6 2.2098 1.4959 -2.4200 6 1 2.8855 0.6599 -2.3155 7 6 1.9345 2.0077 -3.6702 8 7 2.4950 1.4781 -4.7356 9 14 0.7663 3.4541 -3.8509 10 1 1.5339 4.7231 -3.7735 11 1 0.0764 3.3723 -5.1634 12 1 -0.2400 3.4171 -2.7595 13 6 1.6076 2.0890 1.2218 14 6 2.3898 1.5580 2.3955 15 6 3.5755 2.0246 2.8265 16 6 3.9420 1.2409 3.9447 17 6 2.9586 0.3420 4.1298 18 6 2.9157 -0.7073 5.2107 19 9 2.2788 -0.1857 6.3419 20 9 2.2081 -1.8227 4.7499 21 9 4.2202 -1.0874 5.5437 22 8 2.0185 0.5423 3.1919 23 1 -0.3633 0.5317 -0.8794 24 1 -0.3634 -1.0275 -0.0209 25 1 -0.3634 0.4957 0.9002 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5140 0.8900 28 1 0.4838 2.0257 -1.2821 29 1 1.8525 3.1526 -1.1230 30 1 2.3011 1.8379 -5.6152 31 1 1.8009 3.1557 1.1090 32 1 0.5431 1.9285 1.3921 33 1 4.1393 2.8411 2.4001 34 1 4.8397 1.3437 4.5363 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001232443964.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:34 Heat of formation + Delta-G solvation = -122.764270 kcal Electronic energy + Delta-G solvation = -21743.753517 eV Core-core repulsion = 17843.121883 eV Total energy + Delta-G solvation = -3900.631635 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.103 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -50.40059 -47.95246 -47.87101 -42.80042 -37.57751 -33.33066 -32.71499 -31.62913 -29.73095 -28.44152 -26.06768 -24.21177 -22.91338 -22.03366 -20.78437 -19.48012 -18.82720 -18.80779 -18.49431 -16.88531 -16.31962 -15.62566 -15.30492 -14.84937 -14.73306 -14.62513 -14.32225 -14.17084 -14.05427 -14.03036 -13.90707 -13.22741 -13.02628 -12.88982 -12.55758 -12.39595 -12.08636 -11.67803 -11.42906 -11.14443 -10.70316 -10.60698 -10.23433 -10.05976 -9.98461 -9.37610 -8.78130 -8.62799 -7.54760 -6.11042 -4.09267 1.23491 1.85039 2.40900 2.87824 3.22808 3.30526 3.31367 3.57667 4.03484 4.10759 4.35265 4.70873 4.77849 4.79749 5.20768 5.38142 5.47579 5.55443 5.64793 5.73765 5.80769 5.86210 5.97883 6.24999 6.31507 6.41424 6.68607 6.83524 6.90192 6.95242 7.45214 7.71636 7.85586 8.55836 8.97475 9.49328 11.01948 Molecular weight = 277.10amu Principal moments of inertia in cm(-1) A = 0.035505 B = 0.004001 C = 0.003926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.440031 B = 6996.783300 C = 7130.372699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.057 3.943 3 N -0.520 5.520 4 C 0.159 3.841 5 C -0.510 4.510 6 H 0.081 0.919 7 C 0.070 3.930 8 N -0.898 5.898 9 Si 0.873 3.127 10 H -0.275 1.275 11 H -0.286 1.286 12 H -0.268 1.268 13 C 0.115 3.885 14 C 0.062 3.938 15 C -0.207 4.207 16 C -0.120 4.120 17 C -0.143 4.143 18 C 0.562 3.438 19 F -0.170 7.170 20 F -0.169 7.169 21 F -0.162 7.162 22 O -0.150 6.150 23 H 0.068 0.932 24 H 0.054 0.946 25 H 0.044 0.956 26 H 0.092 0.908 27 H 0.055 0.945 28 H 0.000 1.000 29 H 0.026 0.974 30 H 0.264 0.736 31 H 0.106 0.894 32 H 0.055 0.945 33 H 0.162 0.838 34 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.579 -0.664 19.151 19.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.071 4.071 3 N -0.243 5.243 4 C 0.033 3.967 5 C -0.548 4.548 6 H 0.099 0.901 7 C -0.132 4.132 8 N -0.537 5.537 9 Si 0.700 3.300 10 H -0.201 1.201 11 H -0.212 1.212 12 H -0.193 1.193 13 C -0.013 4.013 14 C 0.010 3.990 15 C -0.226 4.226 16 C -0.139 4.139 17 C -0.194 4.194 18 C 0.508 3.492 19 F -0.151 7.151 20 F -0.150 7.150 21 F -0.143 7.143 22 O -0.046 6.046 23 H 0.086 0.914 24 H 0.073 0.927 25 H 0.063 0.937 26 H 0.110 0.890 27 H 0.073 0.927 28 H 0.018 0.982 29 H 0.044 0.956 30 H 0.074 0.926 31 H 0.124 0.876 32 H 0.073 0.927 33 H 0.180 0.820 34 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -0.326 -0.862 18.929 18.952 hybrid contribution -1.255 0.692 -0.033 1.433 sum -1.581 -0.171 18.896 18.963 Atomic orbital electron populations 1.22379 0.99028 1.01763 1.01597 1.22061 0.92371 0.90352 1.02311 1.62237 1.59239 1.02352 1.00501 1.20287 0.94460 0.94034 0.87877 1.20956 1.27630 1.17801 0.88395 0.90066 1.24874 0.95794 0.96713 0.95781 1.69882 1.43707 1.41704 0.98380 0.86902 0.81765 0.83558 0.77759 1.20090 1.21160 1.19254 1.20804 0.96037 0.98482 0.86018 1.23018 0.96245 0.87095 0.92661 1.21644 0.97236 1.05081 0.98660 1.21679 0.98988 0.94595 0.98675 1.21608 0.94915 1.04592 0.98242 1.16748 0.74007 0.79042 0.79433 1.93255 1.82030 1.86560 1.53267 1.93251 1.78724 1.54500 1.88526 1.93234 1.36776 1.91461 1.92809 1.83996 1.41673 1.44884 1.34088 0.91351 0.92717 0.93673 0.89009 0.92661 0.98209 0.95648 0.92571 0.87586 0.92692 0.82038 0.82286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.19 9.28 37.16 0.34 -2.85 16 2 C 0.06 1.07 5.73 -3.83 -0.02 1.05 16 3 N -0.52 -10.16 4.65 -237.51 -1.10 -11.26 16 4 C 0.16 3.56 3.56 -4.98 -0.02 3.54 16 5 C -0.51 -13.80 9.06 -34.44 -0.31 -14.11 16 6 H 0.08 2.43 7.35 -52.49 -0.39 2.04 16 7 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 8 N -0.90 -26.76 13.96 55.43 0.77 -25.99 16 9 Si 0.87 20.53 27.47 -169.99 -4.67 15.86 16 10 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 11 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 12 H -0.27 -5.99 6.54 56.52 0.37 -5.62 16 13 C 0.11 1.80 5.37 -4.97 -0.03 1.77 16 14 C 0.06 0.93 6.08 -35.62 -0.22 0.71 16 15 C -0.21 -2.75 10.81 -39.71 -0.43 -3.18 16 16 C -0.12 -1.46 10.46 -39.71 -0.42 -1.87 16 17 C -0.14 -1.92 6.65 -35.62 -0.24 -2.15 16 18 C 0.56 6.75 3.54 36.01 0.13 6.88 16 19 F -0.17 -1.97 17.30 2.25 0.04 -1.93 16 20 F -0.17 -2.19 17.29 2.25 0.04 -2.15 16 21 F -0.16 -1.80 17.01 2.25 0.04 -1.77 16 22 O -0.15 -2.30 10.11 5.72 0.06 -2.24 16 23 H 0.07 1.27 6.24 -51.93 -0.32 0.95 16 24 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 25 H 0.04 0.69 6.30 -51.93 -0.33 0.37 16 26 H 0.09 1.93 6.83 -51.93 -0.35 1.58 16 27 H 0.05 0.99 6.97 -51.93 -0.36 0.62 16 28 H 0.00 0.01 5.07 -51.93 -0.26 -0.26 16 29 H 0.03 0.56 7.29 -51.92 -0.38 0.18 16 30 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 31 H 0.11 1.48 7.82 -51.93 -0.41 1.08 16 32 H 0.06 0.82 5.91 -51.93 -0.31 0.51 16 33 H 0.16 1.88 8.06 -52.48 -0.42 1.46 16 34 H 0.16 1.48 8.06 -52.48 -0.42 1.05 16 LS Contribution 296.89 15.07 4.47 4.47 Total: -1.00 -29.04 296.89 -5.20 -34.24 By element: Atomic # 1 Polarization: 2.67 SS G_CDS: -3.54 Total: -0.87 kcal Atomic # 6 Polarization: -7.06 SS G_CDS: -1.30 Total: -8.36 kcal Atomic # 7 Polarization: -36.92 SS G_CDS: -0.33 Total: -37.25 kcal Atomic # 8 Polarization: -2.30 SS G_CDS: 0.06 Total: -2.24 kcal Atomic # 9 Polarization: -5.97 SS G_CDS: 0.12 Total: -5.85 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -4.67 Total: 15.86 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -29.04 -5.20 -34.24 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232443964.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.526 kcal (2) G-P(sol) polarization free energy of solvation -29.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds