Wall clock time and date at job start Mon Mar 30 2020 01:47:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46900 * 109.47407 * 2 1 4 4 C 1.46891 * 110.99849 * 299.02471 * 3 2 1 5 5 C 1.50702 * 109.47323 * 293.94870 * 4 3 2 6 6 H 1.08001 * 119.99848 * 0.02562 * 5 4 3 7 7 C 1.37868 * 120.00258 * 180.02562 * 5 4 3 8 8 N 1.31519 * 120.00365 * 179.97438 * 7 5 4 9 9 Si 1.86800 * 120.00011 * 0.02562 * 7 5 4 10 10 H 1.48505 * 109.47498 * 90.00068 * 9 7 5 11 11 H 1.48507 * 109.47261 * 209.99694 * 9 7 5 12 12 H 1.48498 * 109.47438 * 329.99996 * 9 7 5 13 13 C 1.46907 * 110.99486 * 62.97418 * 3 2 1 14 14 C 1.50708 * 109.46908 * 71.55294 * 13 3 2 15 15 C 1.34510 * 125.79317 * 89.28823 * 14 13 3 16 16 C 1.41376 * 106.84038 * 179.97438 * 15 14 13 17 17 C 1.34509 * 106.84202 * 0.02562 * 16 15 14 18 18 C 1.50709 * 125.78828 * 180.02562 * 17 16 15 19 19 F 1.39900 * 109.46982 * 90.00241 * 18 17 16 20 20 F 1.39898 * 109.46634 * 209.99870 * 18 17 16 21 21 F 1.39897 * 109.47186 * 329.99840 * 18 17 16 22 22 O 1.34298 * 108.42181 * 359.73512 * 17 16 15 23 23 H 1.08999 * 109.47050 * 58.84017 * 1 2 3 24 24 H 1.09002 * 109.47195 * 178.83607 * 1 2 3 25 25 H 1.09000 * 109.47371 * 298.83981 * 1 2 3 26 26 H 1.09006 * 109.47308 * 239.99703 * 2 1 3 27 27 H 1.09005 * 109.47124 * 120.00633 * 2 1 3 28 28 H 1.09000 * 109.47437 * 53.95558 * 4 3 2 29 29 H 1.09009 * 109.46931 * 173.95264 * 4 3 2 30 30 H 0.96992 * 120.00338 * 179.97438 * 8 7 5 31 31 H 1.08997 * 109.46463 * 191.54533 * 13 3 2 32 32 H 1.08996 * 109.47416 * 311.55368 * 13 3 2 33 33 H 1.08003 * 126.57709 * 359.96992 * 15 14 13 34 34 H 1.08007 * 126.57769 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5679 2.1030 -1.1991 5 6 2.2098 1.4959 -2.4200 6 1 2.8855 0.6599 -2.3155 7 6 1.9345 2.0077 -3.6702 8 7 2.4950 1.4781 -4.7356 9 14 0.7663 3.4541 -3.8509 10 1 1.5339 4.7231 -3.7735 11 1 0.0764 3.3723 -5.1634 12 1 -0.2400 3.4171 -2.7595 13 6 1.6076 2.0890 1.2218 14 6 2.3898 1.5580 2.3955 15 6 3.5755 2.0246 2.8265 16 6 3.9420 1.2409 3.9447 17 6 2.9586 0.3420 4.1298 18 6 2.9157 -0.7073 5.2107 19 9 2.2788 -0.1857 6.3419 20 9 2.2081 -1.8227 4.7499 21 9 4.2202 -1.0874 5.5437 22 8 2.0185 0.5423 3.1919 23 1 -0.3633 0.5317 -0.8794 24 1 -0.3634 -1.0275 -0.0209 25 1 -0.3634 0.4957 0.9002 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5140 0.8900 28 1 0.4838 2.0257 -1.2821 29 1 1.8525 3.1526 -1.1230 30 1 2.3011 1.8379 -5.6152 31 1 1.8009 3.1557 1.1090 32 1 0.5431 1.9285 1.3921 33 1 4.1393 2.8411 2.4001 34 1 4.8397 1.3437 4.5363 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001232443964.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:34 Heat of formation + Delta-G solvation = -140.914808 kcal Electronic energy + Delta-G solvation = -21744.540584 eV Core-core repulsion = 17843.121883 eV Total energy + Delta-G solvation = -3901.418701 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.103 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -51.34353 -48.87831 -48.83097 -43.85312 -39.08329 -34.74984 -34.35155 -32.83333 -31.29932 -29.89822 -27.47820 -25.40363 -24.58759 -23.09434 -22.00689 -20.92176 -19.84020 -19.75572 -19.44597 -18.88654 -17.50206 -16.85321 -16.80228 -16.31349 -15.91134 -15.68764 -15.64553 -15.26069 -15.01290 -14.97822 -14.95274 -14.71914 -14.50090 -14.15907 -13.98470 -13.56606 -13.32411 -13.30477 -12.83664 -12.69679 -12.40906 -12.28986 -11.89642 -11.63689 -11.43209 -11.11749 -10.73977 -9.86709 -9.06407 -8.24169 -6.27739 0.18630 0.86270 1.38034 1.39360 1.40924 1.50507 1.89143 2.37830 2.59549 3.02278 3.09709 3.16588 3.32233 3.68089 3.84722 4.14960 4.22750 4.34669 4.45999 4.49646 4.57504 4.69615 4.73413 4.82866 4.93807 5.05425 5.21513 5.31643 5.38731 5.54889 5.83426 5.94803 6.25730 6.60380 6.78781 7.35321 8.92615 Molecular weight = 277.10amu Principal moments of inertia in cm(-1) A = 0.035505 B = 0.004001 C = 0.003926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.440031 B = 6996.783300 C = 7130.372699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.061 3.939 3 N -0.536 5.536 4 C 0.168 3.832 5 C -0.513 4.513 6 H 0.034 0.966 7 C 0.008 3.992 8 N -0.951 5.951 9 Si 0.946 3.054 10 H -0.264 1.264 11 H -0.288 1.288 12 H -0.244 1.244 13 C 0.117 3.883 14 C 0.039 3.961 15 C -0.203 4.203 16 C -0.113 4.113 17 C -0.155 4.155 18 C 0.569 3.431 19 F -0.166 7.166 20 F -0.176 7.176 21 F -0.155 7.155 22 O -0.167 6.167 23 H 0.050 0.950 24 H 0.068 0.932 25 H 0.064 0.936 26 H 0.055 0.945 27 H 0.063 0.937 28 H 0.007 0.993 29 H 0.039 0.961 30 H 0.266 0.734 31 H 0.125 0.875 32 H 0.065 0.935 33 H 0.178 0.822 34 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.343 0.926 21.101 21.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.067 4.067 3 N -0.260 5.260 4 C 0.042 3.958 5 C -0.551 4.551 6 H 0.052 0.948 7 C -0.189 4.189 8 N -0.592 5.592 9 Si 0.769 3.231 10 H -0.189 1.189 11 H -0.214 1.214 12 H -0.167 1.167 13 C -0.010 4.010 14 C -0.013 4.013 15 C -0.222 4.222 16 C -0.132 4.132 17 C -0.205 4.205 18 C 0.515 3.485 19 F -0.148 7.148 20 F -0.157 7.157 21 F -0.136 7.136 22 O -0.064 6.064 23 H 0.069 0.931 24 H 0.087 0.913 25 H 0.083 0.917 26 H 0.073 0.927 27 H 0.082 0.918 28 H 0.024 0.976 29 H 0.057 0.943 30 H 0.074 0.926 31 H 0.143 0.857 32 H 0.083 0.917 33 H 0.195 0.805 34 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -1.089 0.724 20.919 20.959 hybrid contribution -0.909 0.092 -0.554 1.068 sum -1.998 0.817 20.365 20.479 Atomic orbital electron populations 1.22281 0.97286 1.02734 1.01595 1.21923 0.93778 0.90088 1.00871 1.62060 1.60112 1.02599 1.01247 1.20045 0.94145 0.94337 0.87252 1.21207 1.26669 1.16460 0.90765 0.94781 1.25829 0.97798 1.00054 0.95224 1.70058 1.46051 1.43994 0.99103 0.85742 0.79699 0.79510 0.78157 1.18867 1.21406 1.16735 1.20829 0.96768 0.99062 0.84322 1.22927 0.97135 0.88029 0.93159 1.21964 0.96540 1.05142 0.98556 1.22054 0.99477 0.93430 0.98231 1.21966 0.95025 1.05235 0.98320 1.16596 0.74166 0.78554 0.79223 1.93262 1.82020 1.86482 1.52992 1.93237 1.78967 1.54867 1.88664 1.93249 1.36282 1.91363 1.92714 1.83955 1.42534 1.45240 1.34696 0.93117 0.91318 0.91721 0.92657 0.91819 0.97589 0.94350 0.92556 0.85681 0.91693 0.80459 0.79344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.88 9.28 71.98 0.67 -5.21 16 2 C 0.06 2.31 5.73 86.30 0.49 2.81 16 3 N -0.54 -20.54 4.65 -905.34 -4.21 -24.75 16 4 C 0.17 7.38 3.56 85.56 0.30 7.68 16 5 C -0.51 -28.41 9.06 25.60 0.23 -28.18 16 6 H 0.03 2.15 7.35 -2.91 -0.02 2.13 16 7 C 0.01 0.45 5.47 84.65 0.46 0.91 16 8 N -0.95 -58.47 13.96 21.44 0.30 -58.17 16 9 Si 0.95 41.83 27.47 68.60 1.88 43.72 16 10 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 11 H -0.29 -12.77 7.11 99.48 0.71 -12.07 16 12 H -0.24 -9.78 6.54 99.48 0.65 -9.12 16 13 C 0.12 3.41 5.37 85.56 0.46 3.87 16 14 C 0.04 1.09 6.08 24.83 0.15 1.24 16 15 C -0.20 -4.88 10.81 22.19 0.24 -4.64 16 16 C -0.11 -2.43 10.46 22.19 0.23 -2.20 16 17 C -0.15 -3.85 6.65 24.83 0.17 -3.69 16 18 C 0.57 12.64 3.54 71.24 0.25 12.89 16 19 F -0.17 -3.55 17.30 44.97 0.78 -2.77 16 20 F -0.18 -4.36 17.29 44.97 0.78 -3.58 16 21 F -0.15 -3.14 17.01 44.97 0.76 -2.37 16 22 O -0.17 -4.83 10.11 -2.44 -0.02 -4.85 16 23 H 0.05 1.83 6.24 -2.39 -0.01 1.81 16 24 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 25 H 0.06 1.84 6.30 -2.39 -0.02 1.83 16 26 H 0.05 2.45 6.83 -2.38 -0.02 2.43 16 27 H 0.06 2.26 6.97 -2.38 -0.02 2.25 16 28 H 0.01 0.28 5.07 -2.39 -0.01 0.27 16 29 H 0.04 1.60 7.29 -2.38 -0.02 1.58 16 30 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 31 H 0.13 3.11 7.82 -2.39 -0.02 3.09 16 32 H 0.07 1.76 5.91 -2.39 -0.01 1.74 16 33 H 0.18 3.61 8.06 -2.91 -0.02 3.59 16 34 H 0.19 2.81 8.06 -2.91 -0.02 2.79 16 Total: -1.00 -63.95 296.89 5.01 -58.93 By element: Atomic # 1 Polarization: 7.28 SS G_CDS: 1.08 Total: 8.36 kcal Atomic # 6 Polarization: -18.18 SS G_CDS: 3.66 Total: -14.51 kcal Atomic # 7 Polarization: -79.01 SS G_CDS: -3.91 Total: -82.92 kcal Atomic # 8 Polarization: -4.83 SS G_CDS: -0.02 Total: -4.85 kcal Atomic # 9 Polarization: -11.04 SS G_CDS: 2.32 Total: -8.72 kcal Atomic # 14 Polarization: 41.83 SS G_CDS: 1.88 Total: 43.72 kcal Total: -63.95 5.01 -58.93 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232443964.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.981 kcal (2) G-P(sol) polarization free energy of solvation -63.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds