Wall clock time and date at job start Mon Mar 30 2020 01:36:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 109.46758 * 2 1 4 4 C 1.50700 * 109.47194 * 119.99798 * 2 1 3 5 5 H 1.07999 * 119.99256 * 116.69007 * 4 2 1 6 6 C 1.37868 * 120.00303 * 296.69370 * 4 2 1 7 7 N 1.31520 * 120.00090 * 352.44338 * 6 4 2 8 8 Si 1.86805 * 120.00195 * 172.71443 * 6 4 2 9 9 H 1.48503 * 109.47054 * 264.79579 * 8 6 4 10 10 H 1.48500 * 109.46575 * 24.79344 * 8 6 4 11 11 H 1.48491 * 109.47049 * 144.79629 * 8 6 4 12 12 C 1.50697 * 109.47254 * 240.00375 * 2 1 3 13 13 O 1.20825 * 119.99929 * 239.99773 * 12 2 1 14 14 O 1.34231 * 120.00011 * 59.99808 * 12 2 1 15 15 C 1.45204 * 116.99927 * 180.02562 * 14 12 2 16 16 C 1.50698 * 109.47016 * 179.97438 * 15 14 12 17 17 C 1.38356 * 119.85419 * 269.72511 * 16 15 14 18 18 C 1.37959 * 120.14312 * 179.72460 * 17 16 15 19 19 C 1.39584 * 119.85316 * 0.55111 * 18 17 16 20 20 C 1.47841 * 120.14636 * 179.70265 * 19 18 17 21 21 N 1.34774 * 119.99876 * 0.02562 * 20 19 18 22 22 O 1.21548 * 119.99858 * 180.02562 * 20 19 18 23 23 C 1.39575 * 119.70872 * 359.72458 * 19 18 17 24 24 C 1.37959 * 119.85258 * 359.97438 * 23 19 18 25 25 H 1.09003 * 109.47025 * 297.77973 * 1 2 3 26 26 H 1.09001 * 109.47192 * 57.78356 * 1 2 3 27 27 H 1.08997 * 109.46811 * 177.78416 * 1 2 3 28 28 H 0.96998 * 120.00239 * 180.27341 * 7 6 4 29 29 H 1.09004 * 109.46741 * 299.99980 * 15 14 12 30 30 H 1.08998 * 109.46870 * 59.99730 * 15 14 12 31 31 H 1.07998 * 119.92995 * 0.02562 * 17 16 15 32 32 H 1.07999 * 120.07585 * 180.25374 * 18 17 16 33 33 H 0.97002 * 120.00303 * 359.97438 * 21 20 19 34 34 H 0.96998 * 120.00275 * 179.97438 * 21 20 19 35 35 H 1.08002 * 120.07491 * 179.97438 * 23 19 18 36 36 H 1.08006 * 119.92821 * 179.97438 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6085 -1.6186 1.1322 6 6 1.7566 -0.2009 2.4815 7 7 1.1861 0.9781 2.6003 8 14 2.1999 -1.1820 4.0082 9 1 1.0172 -1.9593 4.4579 10 1 3.3131 -2.1127 3.6923 11 1 2.6219 -0.2538 5.0877 12 6 2.0324 -0.7103 -1.2305 13 8 2.7271 -1.6927 -1.1196 14 8 1.7081 -0.2517 -2.4496 15 6 2.2269 -0.9861 -3.5897 16 6 1.7619 -0.3296 -4.8640 17 6 0.5725 -0.7262 -5.4489 18 6 0.1384 -0.1253 -6.6124 19 6 0.9077 0.8770 -7.2056 20 6 0.4520 1.5208 -8.4560 21 7 -0.7090 1.1406 -9.0253 22 8 1.1242 2.3930 -8.9705 23 6 2.1095 1.2684 -6.6134 24 6 2.5290 0.6636 -5.4466 25 1 -0.3633 0.4790 0.9092 26 1 -0.3633 0.5479 -0.8694 27 1 -0.3633 -1.0269 -0.0397 28 1 0.9956 1.3383 3.4806 29 1 3.3164 -0.9858 -3.5569 30 1 1.8627 -2.0129 -3.5566 31 1 -0.0198 -1.5046 -4.9911 32 1 -0.7923 -0.4329 -7.0658 33 1 -1.2453 0.4443 -8.6149 34 1 -1.0083 1.5632 -9.8455 35 1 2.7096 2.0430 -7.0676 36 1 3.4590 0.9653 -4.9875 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327174440.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:32 Heat of formation + Delta-G solvation = -110.614239 kcal Electronic energy + Delta-G solvation = -20255.590568 eV Core-core repulsion = 16897.342539 eV Total energy + Delta-G solvation = -3358.248029 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.40441 -39.63796 -38.44514 -35.80340 -34.19551 -33.89017 -32.15562 -31.15002 -30.63960 -27.10454 -25.21062 -23.55868 -22.90336 -22.48712 -20.60189 -19.85647 -18.50526 -17.18052 -16.79555 -16.31637 -16.02981 -15.74335 -15.30249 -15.07821 -15.00688 -14.66274 -14.16442 -13.80312 -13.45937 -12.99514 -12.90383 -12.53673 -12.25481 -11.73746 -11.51217 -11.30229 -11.05927 -10.90196 -10.70322 -10.42184 -10.36605 -10.13372 -10.08597 -10.06434 -9.36713 -9.21012 -9.10578 -8.91968 -8.47533 -6.15209 -4.17755 0.51082 1.15816 2.52957 3.17021 3.24496 3.28690 3.34110 3.36375 3.44315 3.86082 4.38959 4.46467 4.49529 4.68548 4.77962 5.07034 5.12960 5.20030 5.40508 5.48253 5.59196 5.78881 5.98826 6.06622 6.08441 6.35408 6.41849 6.58657 6.62550 6.78978 6.79728 6.97202 7.13822 7.38734 7.63280 7.87635 7.91567 8.08305 8.79207 8.91274 9.47082 10.94533 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.041559 B = 0.003025 C = 0.002977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.586498 B = 9253.455360 C = 9401.609764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.057 3.943 3 H 0.069 0.931 4 C -0.515 4.515 5 H 0.076 0.924 6 C 0.063 3.937 7 N -0.890 5.890 8 Si 0.902 3.098 9 H -0.279 1.279 10 H -0.271 1.271 11 H -0.286 1.286 12 C 0.466 3.534 13 O -0.516 6.516 14 O -0.360 6.360 15 C 0.096 3.904 16 C -0.055 4.055 17 C -0.105 4.105 18 C -0.088 4.088 19 C -0.141 4.141 20 C 0.566 3.434 21 N -0.852 5.852 22 O -0.541 6.541 23 C -0.060 4.060 24 C -0.104 4.104 25 H 0.083 0.917 26 H 0.027 0.973 27 H 0.032 0.968 28 H 0.264 0.736 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.133 0.867 32 H 0.127 0.873 33 H 0.401 0.599 34 H 0.404 0.596 35 H 0.138 0.862 36 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.637 -1.612 -19.475 20.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.038 3.962 3 H 0.087 0.913 4 C -0.553 4.553 5 H 0.094 0.906 6 C -0.139 4.139 7 N -0.529 5.529 8 Si 0.729 3.271 9 H -0.205 1.205 10 H -0.196 1.196 11 H -0.211 1.211 12 C 0.310 3.690 13 O -0.402 6.402 14 O -0.278 6.278 15 C 0.022 3.978 16 C -0.055 4.055 17 C -0.123 4.123 18 C -0.107 4.107 19 C -0.144 4.144 20 C 0.352 3.648 21 N -0.416 5.416 22 O -0.419 6.419 23 C -0.079 4.079 24 C -0.122 4.122 25 H 0.102 0.898 26 H 0.046 0.954 27 H 0.051 0.949 28 H 0.073 0.927 29 H 0.094 0.906 30 H 0.094 0.906 31 H 0.151 0.849 32 H 0.145 0.855 33 H 0.231 0.769 34 H 0.235 0.765 35 H 0.156 0.844 36 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -3.923 -1.257 -19.521 19.951 hybrid contribution -0.201 -0.787 0.666 1.050 sum -4.123 -2.043 -18.855 19.409 Atomic orbital electron populations 1.21668 0.95870 0.99612 1.01492 1.18774 0.94544 0.97397 0.85462 0.91327 1.21116 1.34771 1.10644 0.88766 0.90599 1.24937 0.95002 0.94797 0.99126 1.69951 1.42803 1.16048 1.24049 0.86403 0.78861 0.79856 0.81932 1.20537 1.19607 1.21147 1.25405 0.76601 0.83196 0.83781 1.90505 1.36345 1.26737 1.86659 1.86712 1.70404 1.55680 1.15021 1.21683 0.99189 0.94987 0.81970 1.19912 0.94805 0.95981 0.94792 1.21057 0.95518 1.00365 0.95342 1.21220 0.98787 0.95120 0.95581 1.19883 0.97753 1.00015 0.96740 1.18313 0.80703 0.81712 0.84057 1.43757 1.24102 1.43510 1.30230 1.90815 1.55307 1.31508 1.64271 1.21261 0.94453 0.98027 0.94145 1.21153 1.00567 0.95236 0.95248 0.89808 0.95402 0.94858 0.92665 0.90553 0.90616 0.84905 0.85474 0.76884 0.76476 0.84386 0.84756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.94 8.96 37.16 0.33 -2.61 16 2 C 0.06 1.43 2.63 -92.92 -0.24 1.18 16 3 H 0.07 1.80 8.14 -51.93 -0.42 1.37 16 4 C -0.52 -14.27 8.32 -34.44 -0.29 -14.56 16 5 H 0.08 2.19 6.77 -52.49 -0.36 1.84 16 6 C 0.06 1.73 5.21 -17.82 -0.09 1.63 16 7 N -0.89 -24.70 11.92 55.43 0.66 -24.04 16 8 Si 0.90 21.24 29.54 -169.99 -5.02 16.21 16 9 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 10 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 11 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 12 C 0.47 10.63 7.25 36.00 0.26 10.89 16 13 O -0.52 -12.76 15.21 -18.75 -0.29 -13.05 16 14 O -0.36 -6.89 10.13 -39.26 -0.40 -7.29 16 15 C 0.10 1.43 5.58 36.00 0.20 1.64 16 16 C -0.05 -0.68 5.53 -104.54 -0.58 -1.26 16 17 C -0.10 -1.11 9.68 -39.64 -0.38 -1.49 16 18 C -0.09 -0.78 9.54 -39.18 -0.37 -1.16 16 19 C -0.14 -1.50 5.87 -104.97 -0.62 -2.11 16 20 C 0.57 6.05 8.05 -12.33 -0.10 5.95 16 21 N -0.85 -5.29 8.82 30.53 0.27 -5.02 16 22 O -0.54 -7.86 17.18 5.32 0.09 -7.77 16 23 C -0.06 -0.69 9.60 -39.19 -0.38 -1.06 16 24 C -0.10 -1.22 9.68 -39.64 -0.38 -1.60 16 25 H 0.08 2.07 6.59 -51.93 -0.34 1.73 16 26 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 27 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 28 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 29 H 0.08 1.11 8.08 -51.93 -0.42 0.69 16 30 H 0.08 1.08 8.07 -51.93 -0.42 0.66 16 31 H 0.13 1.21 8.06 -52.49 -0.42 0.78 16 32 H 0.13 0.66 6.41 -52.49 -0.34 0.32 16 33 H 0.40 1.39 6.86 -40.82 -0.28 1.11 16 34 H 0.40 1.96 8.93 -40.82 -0.36 1.59 16 35 H 0.14 1.51 7.65 -52.49 -0.40 1.11 16 36 H 0.13 1.42 8.06 -52.48 -0.42 0.99 16 LS Contribution 318.24 15.07 4.80 4.80 Total: -1.00 -33.08 318.24 -6.69 -39.78 By element: Atomic # 1 Polarization: 5.10 SS G_CDS: -4.17 Total: 0.93 kcal Atomic # 6 Polarization: -1.91 SS G_CDS: -2.64 Total: -4.55 kcal Atomic # 7 Polarization: -29.99 SS G_CDS: 0.93 Total: -29.06 kcal Atomic # 8 Polarization: -27.52 SS G_CDS: -0.59 Total: -28.11 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -33.08 -6.69 -39.78 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327174440.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.837 kcal (2) G-P(sol) polarization free energy of solvation -33.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds