Wall clock time and date at job start Mon Mar 30 2020 01:36:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 109.46758 * 2 1 4 4 C 1.50700 * 109.47194 * 119.99798 * 2 1 3 5 5 H 1.07999 * 119.99256 * 116.69007 * 4 2 1 6 6 C 1.37868 * 120.00303 * 296.69370 * 4 2 1 7 7 N 1.31520 * 120.00090 * 352.44338 * 6 4 2 8 8 Si 1.86805 * 120.00195 * 172.71443 * 6 4 2 9 9 H 1.48503 * 109.47054 * 264.79579 * 8 6 4 10 10 H 1.48500 * 109.46575 * 24.79344 * 8 6 4 11 11 H 1.48491 * 109.47049 * 144.79629 * 8 6 4 12 12 C 1.50697 * 109.47254 * 240.00375 * 2 1 3 13 13 O 1.20825 * 119.99929 * 239.99773 * 12 2 1 14 14 O 1.34231 * 120.00011 * 59.99808 * 12 2 1 15 15 C 1.45204 * 116.99927 * 180.02562 * 14 12 2 16 16 C 1.50698 * 109.47016 * 179.97438 * 15 14 12 17 17 C 1.38356 * 119.85419 * 269.72511 * 16 15 14 18 18 C 1.37959 * 120.14312 * 179.72460 * 17 16 15 19 19 C 1.39584 * 119.85316 * 0.55111 * 18 17 16 20 20 C 1.47841 * 120.14636 * 179.70265 * 19 18 17 21 21 N 1.34774 * 119.99876 * 0.02562 * 20 19 18 22 22 O 1.21548 * 119.99858 * 180.02562 * 20 19 18 23 23 C 1.39575 * 119.70872 * 359.72458 * 19 18 17 24 24 C 1.37959 * 119.85258 * 359.97438 * 23 19 18 25 25 H 1.09003 * 109.47025 * 297.77973 * 1 2 3 26 26 H 1.09001 * 109.47192 * 57.78356 * 1 2 3 27 27 H 1.08997 * 109.46811 * 177.78416 * 1 2 3 28 28 H 0.96998 * 120.00239 * 180.27341 * 7 6 4 29 29 H 1.09004 * 109.46741 * 299.99980 * 15 14 12 30 30 H 1.08998 * 109.46870 * 59.99730 * 15 14 12 31 31 H 1.07998 * 119.92995 * 0.02562 * 17 16 15 32 32 H 1.07999 * 120.07585 * 180.25374 * 18 17 16 33 33 H 0.97002 * 120.00303 * 359.97438 * 21 20 19 34 34 H 0.96998 * 120.00275 * 179.97438 * 21 20 19 35 35 H 1.08002 * 120.07491 * 179.97438 * 23 19 18 36 36 H 1.08006 * 119.92821 * 179.97438 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6085 -1.6186 1.1322 6 6 1.7566 -0.2009 2.4815 7 7 1.1861 0.9781 2.6003 8 14 2.1999 -1.1820 4.0082 9 1 1.0172 -1.9593 4.4579 10 1 3.3131 -2.1127 3.6923 11 1 2.6219 -0.2538 5.0877 12 6 2.0324 -0.7103 -1.2305 13 8 2.7271 -1.6927 -1.1196 14 8 1.7081 -0.2517 -2.4496 15 6 2.2269 -0.9861 -3.5897 16 6 1.7619 -0.3296 -4.8640 17 6 0.5725 -0.7262 -5.4489 18 6 0.1384 -0.1253 -6.6124 19 6 0.9077 0.8770 -7.2056 20 6 0.4520 1.5208 -8.4560 21 7 -0.7090 1.1406 -9.0253 22 8 1.1242 2.3930 -8.9705 23 6 2.1095 1.2684 -6.6134 24 6 2.5290 0.6636 -5.4466 25 1 -0.3633 0.4790 0.9092 26 1 -0.3633 0.5479 -0.8694 27 1 -0.3633 -1.0269 -0.0397 28 1 0.9956 1.3383 3.4806 29 1 3.3164 -0.9858 -3.5569 30 1 1.8627 -2.0129 -3.5566 31 1 -0.0198 -1.5046 -4.9911 32 1 -0.7923 -0.4329 -7.0658 33 1 -1.2453 0.4443 -8.6149 34 1 -1.0083 1.5632 -9.8455 35 1 2.7096 2.0430 -7.0676 36 1 3.4590 0.9653 -4.9875 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327174440.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:32 Heat of formation + Delta-G solvation = -132.468200 kcal Electronic energy + Delta-G solvation = -20256.538227 eV Core-core repulsion = 16897.342539 eV Total energy + Delta-G solvation = -3359.195688 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.49848 -41.03913 -39.40486 -37.41649 -35.88652 -34.96775 -33.24637 -32.51852 -31.96380 -28.21954 -27.23951 -25.10489 -23.72657 -23.68983 -21.63196 -21.42979 -19.23754 -18.63868 -18.03291 -17.95513 -17.69466 -17.16311 -16.53158 -16.13340 -15.89264 -15.85175 -15.62732 -14.76571 -14.73689 -14.37733 -14.30259 -13.89862 -13.57128 -13.45636 -12.97192 -12.85721 -12.59023 -12.57228 -12.32745 -12.15943 -12.05310 -11.61623 -11.26370 -11.13744 -11.03805 -10.75929 -10.54412 -10.02858 -9.96888 -8.22650 -6.32441 -0.37871 0.33922 1.41789 1.43366 1.44876 1.53527 1.60325 2.11330 2.44837 2.49307 2.86508 3.09987 3.53860 3.68093 3.86648 3.94546 4.12762 4.16828 4.34470 4.47727 4.52637 4.68964 4.70906 4.88087 4.97774 4.98937 5.15852 5.25147 5.38010 5.46367 5.46680 5.68400 5.76588 5.81941 5.86094 6.07790 6.38001 6.74513 7.04369 7.24950 7.35806 8.86626 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.041559 B = 0.003025 C = 0.002977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.586498 B = 9253.455360 C = 9401.609764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.049 3.951 3 H 0.050 0.950 4 C -0.539 4.539 5 H 0.057 0.943 6 C 0.024 3.976 7 N -0.911 5.911 8 Si 0.961 3.039 9 H -0.269 1.269 10 H -0.276 1.276 11 H -0.277 1.277 12 C 0.475 3.525 13 O -0.541 6.541 14 O -0.357 6.357 15 C 0.093 3.907 16 C -0.073 4.073 17 C -0.106 4.106 18 C -0.073 4.073 19 C -0.145 4.145 20 C 0.563 3.437 21 N -0.827 5.827 22 O -0.588 6.588 23 C -0.073 4.073 24 C -0.111 4.111 25 H 0.063 0.937 26 H 0.052 0.948 27 H 0.037 0.963 28 H 0.268 0.732 29 H 0.076 0.924 30 H 0.085 0.915 31 H 0.151 0.849 32 H 0.171 0.829 33 H 0.418 0.582 34 H 0.414 0.586 35 H 0.135 0.865 36 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.268 -2.468 -20.433 21.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.030 3.970 3 H 0.068 0.932 4 C -0.577 4.577 5 H 0.075 0.925 6 C -0.176 4.176 7 N -0.549 5.549 8 Si 0.786 3.214 9 H -0.195 1.195 10 H -0.200 1.200 11 H -0.202 1.202 12 C 0.320 3.680 13 O -0.430 6.430 14 O -0.275 6.275 15 C 0.020 3.980 16 C -0.073 4.073 17 C -0.123 4.123 18 C -0.092 4.092 19 C -0.148 4.148 20 C 0.350 3.650 21 N -0.391 5.391 22 O -0.469 6.469 23 C -0.092 4.092 24 C -0.129 4.129 25 H 0.082 0.918 26 H 0.071 0.929 27 H 0.056 0.944 28 H 0.077 0.923 29 H 0.094 0.906 30 H 0.103 0.897 31 H 0.169 0.831 32 H 0.188 0.812 33 H 0.251 0.749 34 H 0.247 0.753 35 H 0.152 0.848 36 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -5.609 -2.124 -20.508 21.367 hybrid contribution 0.268 -0.500 0.816 0.993 sum -5.341 -2.624 -19.693 20.572 Atomic orbital electron populations 1.21496 0.94282 0.99990 1.01554 1.18682 0.95888 0.96271 0.86194 0.93187 1.21249 1.35433 1.10497 0.90491 0.92450 1.25631 0.94787 0.95616 1.01596 1.70025 1.43050 1.16893 1.24908 0.85497 0.78671 0.78590 0.78658 1.19477 1.20046 1.20228 1.24799 0.76055 0.82483 0.84620 1.90486 1.37394 1.27768 1.87347 1.86641 1.70041 1.55894 1.14876 1.21966 0.99378 0.95403 0.81244 1.19817 0.96339 0.97057 0.94104 1.21328 0.94711 1.00590 0.95716 1.21589 0.99666 0.93410 0.94497 1.20060 0.97619 1.00322 0.96805 1.18376 0.81425 0.81244 0.84000 1.43563 1.22516 1.43020 1.30018 1.90800 1.56989 1.33664 1.65479 1.21319 0.95277 0.98321 0.94284 1.21204 1.00855 0.95307 0.95520 0.91813 0.92925 0.94421 0.92274 0.90559 0.89663 0.83091 0.81163 0.74924 0.75337 0.84754 0.84532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.23 8.96 71.98 0.65 -4.59 16 2 C 0.05 2.46 2.63 -12.29 -0.03 2.43 16 3 H 0.05 2.69 8.14 -2.39 -0.02 2.67 16 4 C -0.54 -30.30 8.32 25.60 0.21 -30.09 16 5 H 0.06 3.38 6.77 -2.91 -0.02 3.36 16 6 C 0.02 1.30 5.21 84.65 0.44 1.74 16 7 N -0.91 -50.62 11.92 21.44 0.26 -50.37 16 8 Si 0.96 43.44 29.54 68.60 2.03 45.46 16 9 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 10 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 11 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 12 C 0.47 21.79 7.25 71.23 0.52 22.31 16 13 O -0.54 -27.02 15.21 21.97 0.33 -26.69 16 14 O -0.36 -13.47 10.13 -51.43 -0.52 -14.00 16 15 C 0.09 2.72 5.58 71.24 0.40 3.12 16 16 C -0.07 -1.73 5.53 -19.81 -0.11 -1.84 16 17 C -0.11 -1.93 9.68 22.23 0.22 -1.71 16 18 C -0.07 -1.04 9.54 22.53 0.21 -0.83 16 19 C -0.14 -2.79 5.87 -20.09 -0.12 -2.91 16 20 C 0.56 11.02 8.05 86.79 0.70 11.72 16 21 N -0.83 -7.68 8.82 -175.61 -1.55 -9.23 16 22 O -0.59 -16.80 17.18 -3.87 -0.07 -16.86 16 23 C -0.07 -1.63 9.60 22.53 0.22 -1.42 16 24 C -0.11 -2.56 9.68 22.23 0.22 -2.34 16 25 H 0.06 3.14 6.59 -2.39 -0.02 3.12 16 26 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 27 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 28 H 0.27 14.03 8.31 -92.71 -0.77 13.26 16 29 H 0.08 2.21 8.08 -2.38 -0.02 2.19 16 30 H 0.09 2.32 8.07 -2.39 -0.02 2.30 16 31 H 0.15 2.20 8.06 -2.91 -0.02 2.17 16 32 H 0.17 0.86 6.41 -2.91 -0.02 0.84 16 33 H 0.42 1.10 6.86 -92.71 -0.64 0.46 16 34 H 0.41 2.82 8.93 -92.71 -0.83 1.99 16 35 H 0.13 3.03 7.65 -2.91 -0.02 3.01 16 36 H 0.14 2.94 8.06 -2.91 -0.02 2.91 16 Total: -1.00 -71.99 318.24 3.66 -68.33 By element: Atomic # 1 Polarization: 8.09 SS G_CDS: -0.33 Total: 7.76 kcal Atomic # 6 Polarization: -7.92 SS G_CDS: 3.51 Total: -4.40 kcal Atomic # 7 Polarization: -58.31 SS G_CDS: -1.29 Total: -59.60 kcal Atomic # 8 Polarization: -57.29 SS G_CDS: -0.25 Total: -57.54 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.46 kcal Total: -71.99 3.66 -68.33 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327174440.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.139 kcal (2) G-P(sol) polarization free energy of solvation -71.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds