Wall clock time and date at job start Mon Mar 30 2020 01:36:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47403 * 2 1 4 4 C 1.50703 * 109.47161 * 120.00638 * 2 1 3 5 5 H 1.07999 * 120.00054 * 114.47034 * 4 2 1 6 6 C 1.37877 * 119.99534 * 294.47096 * 4 2 1 7 7 N 1.31514 * 119.99648 * 164.58785 * 6 4 2 8 8 Si 1.86804 * 120.00196 * 344.86501 * 6 4 2 9 9 H 1.48494 * 109.47200 * 269.72432 * 8 6 4 10 10 H 1.48503 * 109.47015 * 29.72603 * 8 6 4 11 11 H 1.48502 * 109.46850 * 149.72532 * 8 6 4 12 12 C 1.50708 * 109.46862 * 239.99945 * 2 1 3 13 13 O 1.20819 * 119.99960 * 240.00291 * 12 2 1 14 14 O 1.34227 * 119.99451 * 60.00431 * 12 2 1 15 15 C 1.45202 * 116.99609 * 179.97438 * 14 12 2 16 16 C 1.50704 * 109.47279 * 179.97438 * 15 14 12 17 17 C 1.38376 * 119.92756 * 269.72686 * 16 15 14 18 18 C 1.38347 * 120.29489 * 179.76253 * 17 16 15 19 19 C 1.37982 * 120.13725 * 0.50842 * 18 17 16 20 20 C 1.39556 * 119.85589 * 359.74685 * 19 18 17 21 21 C 1.47846 * 120.14177 * 179.97438 * 20 19 18 22 22 N 1.34774 * 120.00404 * 0.02562 * 21 20 19 23 23 O 1.21555 * 119.99761 * 180.02562 * 21 20 19 24 24 C 1.37935 * 119.92841 * 89.99849 * 16 15 14 25 25 H 1.09006 * 109.46706 * 293.56067 * 1 2 3 26 26 H 1.09005 * 109.47153 * 53.55341 * 1 2 3 27 27 H 1.08999 * 109.47350 * 173.56042 * 1 2 3 28 28 H 0.96995 * 120.00341 * 355.18972 * 7 6 4 29 29 H 1.08993 * 109.47307 * 299.99890 * 15 14 12 30 30 H 1.09007 * 109.47170 * 60.00111 * 15 14 12 31 31 H 1.08002 * 119.85838 * 359.97438 * 17 16 15 32 32 H 1.07995 * 119.92891 * 180.25666 * 18 17 16 33 33 H 1.08003 * 120.06713 * 179.72089 * 19 18 17 34 34 H 0.97002 * 119.99884 * 359.97438 * 22 21 20 35 35 H 0.96998 * 120.00243 * 179.97438 * 22 21 20 36 36 H 1.08004 * 120.07169 * 359.96170 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7106 1.2304 5 1 2.5776 -1.6378 1.1337 6 6 1.7958 -0.1768 2.4795 7 7 1.9546 -0.9200 3.5529 8 14 1.2422 1.5995 2.6467 9 1 2.4319 2.4786 2.7760 10 1 0.4656 1.9913 1.4431 11 1 0.3890 1.7404 3.8539 12 6 2.0323 -0.7105 -1.2305 13 8 2.7268 -1.6928 -1.1197 14 8 1.7080 -0.2517 -2.4496 15 6 2.2275 -0.9856 -3.5897 16 6 1.7625 -0.3291 -4.8640 17 6 0.5736 -0.7253 -5.4507 18 6 0.1370 -0.1244 -6.6179 19 6 0.8911 0.8677 -7.2103 20 6 2.0938 1.2684 -6.6266 21 6 2.9070 2.3305 -7.2562 22 7 2.4872 2.9144 -8.3960 23 8 3.9543 2.6771 -6.7458 24 6 2.5257 0.6615 -5.4460 25 1 -0.3633 0.4108 0.9421 26 1 -0.3634 0.6105 -0.8267 27 1 -0.3634 -1.0212 -0.1153 28 1 2.1700 -1.8614 3.4634 29 1 3.3170 -0.9846 -3.5567 30 1 1.8640 -2.0128 -3.5570 31 1 -0.0180 -1.5048 -4.9937 32 1 -0.7938 -0.4354 -7.0685 33 1 0.5515 1.3330 -8.1239 34 1 1.6516 2.6376 -8.8035 35 1 3.0206 3.6115 -8.8089 36 1 3.4554 0.9673 -4.9891 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327997522.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:36 Heat of formation + Delta-G solvation = -107.066226 kcal Electronic energy + Delta-G solvation = -20485.748377 eV Core-core repulsion = 17127.654201 eV Total energy + Delta-G solvation = -3358.094176 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.46143 -39.69768 -38.48106 -35.90819 -34.22494 -33.95939 -32.18127 -31.33094 -31.15192 -26.70453 -24.87837 -24.45152 -23.08819 -21.98320 -20.51838 -19.67964 -18.41270 -17.47621 -17.12564 -16.65192 -16.32752 -15.96533 -15.77104 -15.02372 -14.82532 -14.73808 -13.99396 -13.82788 -13.40049 -13.03829 -12.97865 -12.47494 -12.37145 -11.96660 -11.81099 -11.47276 -11.33637 -11.14146 -10.57545 -10.37912 -10.31544 -10.18355 -10.07202 -9.67954 -9.49520 -9.25024 -9.05912 -8.85788 -8.34784 -6.51856 -4.13243 0.53248 0.98680 2.53138 3.12349 3.14637 3.30966 3.39407 3.41792 3.55527 3.79705 4.40665 4.43540 4.46518 4.56006 4.79501 4.99232 5.05012 5.22158 5.28925 5.43028 5.55082 5.68050 5.90150 5.94602 6.02485 6.21392 6.27600 6.39807 6.43381 6.49866 6.55527 6.82919 6.95606 7.06596 7.19298 7.79067 7.91527 8.40316 8.71563 8.93097 9.55971 10.89497 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.025250 B = 0.003693 C = 0.003529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.633792 B = 7579.464099 C = 7932.276723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.032 3.968 3 H 0.058 0.942 4 C -0.600 4.600 5 H 0.076 0.924 6 C 0.036 3.964 7 N -0.900 5.900 8 Si 1.038 2.962 9 H -0.283 1.283 10 H -0.268 1.268 11 H -0.283 1.283 12 C 0.471 3.529 13 O -0.507 6.507 14 O -0.362 6.362 15 C 0.101 3.899 16 C -0.092 4.092 17 C -0.067 4.067 18 C -0.130 4.130 19 C -0.082 4.082 20 C -0.146 4.146 21 C 0.565 3.435 22 N -0.853 5.853 23 O -0.536 6.536 24 C -0.035 4.035 25 H 0.062 0.938 26 H 0.037 0.963 27 H 0.046 0.954 28 H 0.271 0.729 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.132 0.868 32 H 0.132 0.868 33 H 0.126 0.874 34 H 0.400 0.600 35 H 0.405 0.595 36 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.917 5.101 -25.451 26.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.012 3.988 3 H 0.076 0.924 4 C -0.637 4.637 5 H 0.094 0.906 6 C -0.170 4.170 7 N -0.533 5.533 8 Si 0.865 3.135 9 H -0.210 1.210 10 H -0.194 1.194 11 H -0.209 1.209 12 C 0.315 3.685 13 O -0.392 6.392 14 O -0.281 6.281 15 C 0.027 3.973 16 C -0.092 4.092 17 C -0.086 4.086 18 C -0.148 4.148 19 C -0.101 4.101 20 C -0.149 4.149 21 C 0.351 3.649 22 N -0.417 5.417 23 O -0.413 6.413 24 C -0.054 4.054 25 H 0.081 0.919 26 H 0.057 0.943 27 H 0.065 0.935 28 H 0.081 0.919 29 H 0.095 0.905 30 H 0.095 0.905 31 H 0.150 0.850 32 H 0.150 0.850 33 H 0.144 0.856 34 H 0.230 0.770 35 H 0.236 0.764 36 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -5.401 6.042 -23.850 25.189 hybrid contribution 0.245 -1.232 -1.613 2.044 sum -5.155 4.810 -25.463 26.421 Atomic orbital electron populations 1.22100 0.96130 1.00586 1.00773 1.19123 0.94316 0.97204 0.88147 0.92426 1.21996 1.40678 1.11660 0.89416 0.90565 1.25752 0.94195 1.05389 0.91629 1.70786 1.43502 1.08511 1.30550 0.84201 0.77467 0.75515 0.76318 1.20999 1.19380 1.20863 1.24822 0.76864 0.83281 0.83533 1.90529 1.35731 1.26378 1.86594 1.86677 1.70444 1.55876 1.15069 1.21640 0.99250 0.94836 0.81602 1.19625 0.95781 0.97866 0.95928 1.21378 0.94328 0.98358 0.94495 1.21085 1.00319 0.97107 0.96274 1.21281 0.93320 0.96458 0.98996 1.19816 0.96924 0.99940 0.98204 1.18283 0.84926 0.81384 0.80322 1.43737 1.27804 1.42841 1.27309 1.90846 1.23780 1.63731 1.62976 1.21241 0.99414 0.92061 0.92644 0.91921 0.94350 0.93462 0.91880 0.90486 0.90518 0.85023 0.84986 0.85584 0.77030 0.76419 0.84257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.95 8.40 37.16 0.31 -2.64 16 2 C 0.03 0.77 2.29 -92.92 -0.21 0.56 16 3 H 0.06 1.35 6.77 -51.93 -0.35 1.00 16 4 C -0.60 -17.27 8.65 -34.44 -0.30 -17.57 16 5 H 0.08 2.46 7.02 -52.49 -0.37 2.09 16 6 C 0.04 1.03 5.33 -17.82 -0.09 0.93 16 7 N -0.90 -27.69 13.70 55.43 0.76 -26.93 16 8 Si 1.04 24.35 26.17 -169.99 -4.45 19.91 16 9 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 10 H -0.27 -5.62 5.53 56.52 0.31 -5.31 16 11 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 12 C 0.47 10.88 7.25 36.01 0.26 11.14 16 13 O -0.51 -13.01 15.22 -18.74 -0.29 -13.29 16 14 O -0.36 -6.96 10.13 -39.25 -0.40 -7.35 16 15 C 0.10 1.55 5.59 36.01 0.20 1.76 16 16 C -0.09 -1.17 5.51 -104.68 -0.58 -1.75 16 17 C -0.07 -0.69 9.69 -39.49 -0.38 -1.08 16 18 C -0.13 -1.04 10.03 -39.64 -0.40 -1.43 16 19 C -0.08 -0.63 9.54 -39.18 -0.37 -1.00 16 20 C -0.15 -1.57 5.87 -104.97 -0.62 -2.18 16 21 C 0.56 6.27 8.05 -12.33 -0.10 6.17 16 22 N -0.85 -5.26 8.82 30.53 0.27 -4.99 16 23 O -0.54 -8.33 17.18 5.32 0.09 -8.24 16 24 C -0.03 -0.45 9.24 -39.19 -0.36 -0.81 16 25 H 0.06 1.35 5.06 -51.93 -0.26 1.08 16 26 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.27 8.38 8.73 -40.82 -0.36 8.02 16 29 H 0.08 1.18 8.08 -51.93 -0.42 0.76 16 30 H 0.08 1.12 8.07 -51.93 -0.42 0.70 16 31 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 32 H 0.13 0.68 8.06 -52.49 -0.42 0.26 16 33 H 0.13 0.49 6.41 -52.48 -0.34 0.15 16 34 H 0.40 1.20 6.86 -40.82 -0.28 0.92 16 35 H 0.40 2.00 8.93 -40.82 -0.36 1.63 16 36 H 0.14 1.92 7.65 -52.48 -0.40 1.52 16 LS Contribution 312.38 15.07 4.71 4.71 Total: -1.00 -35.88 312.38 -6.08 -41.96 By element: Atomic # 1 Polarization: 6.27 SS G_CDS: -4.14 Total: 2.14 kcal Atomic # 6 Polarization: -5.26 SS G_CDS: -2.64 Total: -7.90 kcal Atomic # 7 Polarization: -32.95 SS G_CDS: 1.03 Total: -31.92 kcal Atomic # 8 Polarization: -28.29 SS G_CDS: -0.59 Total: -28.89 kcal Atomic # 14 Polarization: 24.35 SS G_CDS: -4.45 Total: 19.91 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -35.88 -6.08 -41.96 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327997522.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.106 kcal (2) G-P(sol) polarization free energy of solvation -35.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds