Wall clock time and date at job start Mon Mar 30 2020 01:28:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09001 * 109.56511 * 2 1 4 4 C 1.51874 * 109.66816 * 120.29697 * 2 1 3 5 5 N 1.47005 * 104.42489 * 226.04121 * 4 2 1 6 6 C 1.46904 * 111.00042 * 135.41660 * 5 4 2 7 7 C 1.53003 * 109.46722 * 295.72033 * 6 5 4 8 8 H 1.08994 * 109.47269 * 58.34738 * 7 6 5 9 9 O 1.42899 * 109.47065 * 298.34065 * 7 6 5 10 10 C 1.50707 * 109.46639 * 178.34285 * 7 6 5 11 11 H 1.07994 * 120.00572 * 359.97438 * 10 7 6 12 12 C 1.37875 * 119.99599 * 180.02562 * 10 7 6 13 13 N 1.31515 * 120.00168 * 359.97438 * 12 10 7 14 14 Si 1.86797 * 120.00147 * 179.97438 * 12 10 7 15 15 H 1.48496 * 109.47207 * 270.00277 * 14 12 10 16 16 H 1.48503 * 109.47080 * 29.99785 * 14 12 10 17 17 H 1.48499 * 109.47463 * 149.99783 * 14 12 10 18 18 C 1.39183 * 117.12474 * 264.30986 * 5 4 2 19 19 C 1.55038 * 110.27784 * 64.26985 * 18 5 4 20 20 S 1.79469 * 109.76729 * 287.46860 * 19 18 5 21 21 O 1.42100 * 108.00289 * 203.73558 * 20 19 18 22 22 O 1.42101 * 108.00361 * 333.27665 * 20 19 18 23 23 C 1.54459 * 109.56902 * 239.75830 * 2 1 3 24 24 H 1.08993 * 109.47145 * 180.24658 * 1 2 3 25 25 H 1.09005 * 109.46874 * 300.24460 * 1 2 3 26 26 H 1.09000 * 109.46923 * 60.24124 * 1 2 3 27 27 H 1.08997 * 110.43550 * 107.31524 * 4 2 1 28 28 H 1.09000 * 110.43566 * 344.76446 * 4 2 1 29 29 H 1.08996 * 109.47143 * 175.72169 * 6 5 4 30 30 H 1.08997 * 109.47072 * 55.71679 * 6 5 4 31 31 H 0.96699 * 113.99827 * 299.99987 * 9 7 6 32 32 H 0.97006 * 120.00106 * 180.02562 * 13 12 10 33 33 H 1.08998 * 109.33202 * 184.52268 * 18 5 4 34 34 H 1.09000 * 109.33305 * 304.18574 * 18 5 4 35 35 H 1.08992 * 109.42004 * 47.56279 * 19 18 5 36 36 H 1.09001 * 109.41521 * 167.38074 * 19 18 5 37 37 H 1.08995 * 109.32607 * 80.83442 * 23 2 1 38 38 H 1.09000 * 109.32190 * 321.37807 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8951 1.0271 0.0000 4 6 2.0412 -0.7215 1.2348 5 7 3.0951 0.1572 1.7624 6 6 2.9793 0.3019 3.2197 7 6 1.6632 1.0044 3.5594 8 1 0.8295 0.4269 3.1600 9 8 1.6577 2.3112 2.9813 10 6 1.5254 1.1164 5.0559 11 1 2.2988 0.7253 5.7003 12 6 0.4113 1.7172 5.6025 13 7 -0.5309 2.1930 4.8179 14 14 0.2400 1.8555 7.4575 15 1 -0.4575 0.6537 7.9811 16 1 1.5879 1.9531 8.0731 17 1 -0.5464 3.0697 7.7929 18 6 4.4056 -0.1307 1.3924 19 6 4.5829 0.0451 -0.1378 20 16 3.7624 -1.2968 -1.0020 21 8 4.3733 -1.4363 -2.2774 22 8 3.7284 -2.4219 -0.1348 23 6 2.0474 -0.7330 -1.2573 24 1 -0.3633 -1.0276 0.0044 25 1 -0.3633 0.5177 0.8878 26 1 -0.3633 0.5101 -0.8922 27 1 2.4556 -1.6926 0.9640 28 1 1.2413 -0.8378 1.9660 29 1 3.8143 0.8944 3.5935 30 1 2.9958 -0.6836 3.6851 31 1 2.3741 2.8816 3.2920 32 1 -1.3146 2.6161 5.2025 33 1 5.0844 0.5438 1.9143 34 1 4.6395 -1.1599 1.6645 35 1 4.1469 0.9952 -0.4463 36 1 5.6450 0.0382 -0.3826 37 1 2.0139 -0.0546 -2.1097 38 1 1.4110 -1.5944 -1.4601 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001333486394.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:32 Heat of formation + Delta-G solvation = -101.510231 kcal Electronic energy + Delta-G solvation = -21270.761981 eV Core-core repulsion = 18048.352682 eV Total energy + Delta-G solvation = -3222.409299 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.19644 -36.86081 -36.05318 -35.50758 -34.59446 -32.11557 -31.15115 -28.02845 -27.61401 -26.31239 -24.52925 -21.64696 -20.63430 -20.08574 -18.66224 -17.28467 -16.88683 -16.55202 -15.90368 -15.57156 -14.71982 -14.62170 -14.29503 -13.94350 -13.86235 -13.61724 -13.11826 -12.86659 -12.56549 -12.40546 -12.34030 -12.10450 -11.99366 -11.79391 -11.29557 -11.11927 -10.99141 -10.89472 -10.72397 -10.64812 -10.43594 -10.37030 -10.10743 -10.02573 -9.04723 -8.58757 -8.19186 -7.63762 -6.04559 -4.22540 0.01157 2.78486 3.24986 3.32652 3.34570 3.59954 3.90923 4.14849 4.38935 4.53806 4.64413 4.88063 4.93567 5.18308 5.23738 5.26327 5.43345 5.67523 5.71193 5.74839 5.85411 5.95009 6.01486 6.10867 6.23163 6.33354 6.48583 6.54832 6.59590 6.75750 7.41466 7.64443 7.77997 7.89596 8.15905 8.81140 9.41897 9.57975 10.99358 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.034867 B = 0.005031 C = 0.004720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.856746 B = 5564.382751 C = 5930.511274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.066 4.066 3 H 0.107 0.893 4 C 0.003 3.997 5 N -0.565 5.565 6 C 0.037 3.963 7 C 0.236 3.764 8 H 0.058 0.942 9 O -0.554 6.554 10 C -0.576 4.576 11 H 0.054 0.946 12 C 0.081 3.919 13 N -0.858 5.858 14 Si 0.888 3.112 15 H -0.280 1.280 16 H -0.274 1.274 17 H -0.286 1.286 18 C 0.101 3.899 19 C -0.618 4.618 20 S 2.415 3.585 21 O -0.960 6.960 22 O -0.943 6.943 23 C -0.597 4.597 24 H 0.050 0.950 25 H 0.077 0.923 26 H 0.051 0.949 27 H 0.087 0.913 28 H 0.103 0.897 29 H 0.064 0.936 30 H 0.034 0.966 31 H 0.341 0.659 32 H 0.260 0.740 33 H 0.091 0.909 34 H 0.041 0.959 35 H 0.142 0.858 36 H 0.136 0.864 37 H 0.128 0.872 38 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.278 -3.486 -10.374 12.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.086 4.086 3 H 0.125 0.875 4 C -0.124 4.124 5 N -0.288 5.288 6 C -0.089 4.089 7 C 0.178 3.822 8 H 0.075 0.925 9 O -0.355 6.355 10 C -0.614 4.614 11 H 0.072 0.928 12 C -0.125 4.125 13 N -0.494 5.494 14 Si 0.715 3.285 15 H -0.206 1.206 16 H -0.199 1.199 17 H -0.211 1.211 18 C -0.031 4.031 19 C -0.749 4.749 20 S 2.601 3.399 21 O -0.958 6.958 22 O -0.940 6.940 23 C -0.728 4.728 24 H 0.069 0.931 25 H 0.096 0.904 26 H 0.070 0.930 27 H 0.104 0.896 28 H 0.121 0.879 29 H 0.083 0.917 30 H 0.052 0.948 31 H 0.184 0.816 32 H 0.070 0.930 33 H 0.109 0.891 34 H 0.059 0.941 35 H 0.160 0.840 36 H 0.154 0.846 37 H 0.146 0.854 38 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 5.892 -4.046 -11.175 13.265 hybrid contribution 0.218 0.309 1.780 1.819 sum 6.110 -3.737 -9.395 11.814 Atomic orbital electron populations 1.21848 0.93663 1.01604 1.02913 1.21302 0.97659 1.00565 0.89025 0.87476 1.23139 0.96268 0.95057 0.97921 1.57985 1.02895 1.53116 1.14830 1.23079 1.02908 0.99894 0.83058 1.19388 0.89700 0.81528 0.91564 0.92463 1.86551 1.53726 1.25647 1.69610 1.21658 1.05965 1.41375 0.92426 0.92761 1.24994 0.95429 0.94431 0.97637 1.70068 1.08439 1.36447 1.34402 0.86697 0.78205 0.77614 0.85968 1.20591 1.19881 1.21150 1.20441 0.92053 1.00837 0.89733 1.30586 1.13688 1.20614 1.09992 1.07920 0.78701 0.78033 0.75272 1.93533 1.75274 1.85980 1.40964 1.93493 1.86177 1.47546 1.66813 1.30771 1.22131 1.11776 1.08100 0.93062 0.90422 0.92961 0.89560 0.87853 0.91743 0.94766 0.81562 0.93018 0.89061 0.94122 0.83951 0.84581 0.85353 0.85041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.93 8.86 37.16 0.33 -1.60 16 2 C -0.07 -0.87 2.47 -90.42 -0.22 -1.10 16 3 H 0.11 1.49 7.31 -51.93 -0.38 1.11 16 4 C 0.00 0.05 4.83 -4.34 -0.02 0.02 16 5 N -0.56 -8.94 3.24 -239.89 -0.78 -9.72 16 6 C 0.04 0.69 4.49 -3.82 -0.02 0.68 16 7 C 0.24 5.50 2.73 -27.88 -0.08 5.42 16 8 H 0.06 1.45 6.30 -51.93 -0.33 1.13 16 9 O -0.55 -13.15 12.63 -35.23 -0.44 -13.59 16 10 C -0.58 -15.01 8.76 -34.44 -0.30 -15.31 16 11 H 0.05 1.39 7.74 -52.49 -0.41 0.98 16 12 C 0.08 2.19 5.40 -17.82 -0.10 2.09 16 13 N -0.86 -24.29 12.84 55.43 0.71 -23.58 16 14 Si 0.89 20.54 29.54 -169.99 -5.02 15.52 16 15 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 16 H -0.27 -6.25 7.11 56.52 0.40 -5.84 16 17 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 18 C 0.10 1.34 5.06 -6.71 -0.03 1.31 16 19 C -0.62 -6.59 5.91 38.23 0.23 -6.36 16 20 S 2.42 29.34 4.92 -107.50 -0.53 28.81 16 21 O -0.96 -14.23 18.06 -57.91 -1.05 -15.28 16 22 O -0.94 -14.41 14.10 -57.91 -0.82 -15.22 16 23 C -0.60 -6.33 5.96 37.92 0.23 -6.11 16 24 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.08 1.29 8.14 -51.93 -0.42 0.86 16 26 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.09 1.30 4.19 -51.85 -0.22 1.08 16 28 H 0.10 1.80 5.49 -51.93 -0.29 1.52 16 29 H 0.06 1.16 7.65 -51.93 -0.40 0.76 16 30 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.34 7.34 9.04 45.56 0.41 7.75 16 32 H 0.26 7.02 8.31 -40.82 -0.34 6.69 16 33 H 0.09 1.12 7.64 -51.93 -0.40 0.73 16 34 H 0.04 0.57 7.21 -51.93 -0.37 0.19 16 35 H 0.14 1.32 7.73 -51.79 -0.40 0.92 16 36 H 0.14 1.16 8.14 -51.79 -0.42 0.74 16 37 H 0.13 1.07 8.14 -51.93 -0.42 0.64 16 38 H 0.13 1.25 7.97 -51.93 -0.41 0.83 16 LS Contribution 306.55 15.07 4.62 4.62 Total: -1.00 -32.78 306.55 -8.15 -40.92 By element: Atomic # 1 Polarization: 13.34 SS G_CDS: -4.86 Total: 8.48 kcal Atomic # 6 Polarization: -20.97 SS G_CDS: 0.01 Total: -20.96 kcal Atomic # 7 Polarization: -33.23 SS G_CDS: -0.06 Total: -33.30 kcal Atomic # 8 Polarization: -41.79 SS G_CDS: -2.31 Total: -44.09 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Atomic # 16 Polarization: 29.34 SS G_CDS: -0.53 Total: 28.81 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -32.78 -8.15 -40.92 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333486394.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.588 kcal (2) G-P(sol) polarization free energy of solvation -32.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds