Wall clock time and date at job start Mon Mar 30 2020 01:37:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34708 * 117.00219 * 2 1 4 4 O 1.21452 * 119.99845 * 0.02562 * 3 2 1 5 5 C 1.47838 * 120.00049 * 180.02562 * 3 2 1 6 6 C 1.39269 * 120.20299 * 353.89971 * 5 3 2 7 7 C 1.38205 * 119.99023 * 180.27924 * 6 5 3 8 8 C 1.38371 * 120.40060 * 359.74497 * 7 6 5 9 9 C 1.38230 * 120.40901 * 359.97438 * 8 7 6 10 10 C 1.39199 * 119.99900 * 0.02562 * 9 8 7 11 11 C 1.47959 * 120.20039 * 179.97438 * 10 9 8 12 12 O 1.21530 * 120.00181 * 124.97795 * 11 10 9 13 13 N 1.34777 * 119.99553 * 304.98006 * 11 10 9 14 14 C 1.46511 * 119.99384 * 179.97438 * 13 11 10 15 15 H 1.08997 * 109.46866 * 34.99967 * 14 13 11 16 16 C 1.52999 * 109.46916 * 274.99885 * 14 13 11 17 17 C 1.50704 * 109.46742 * 155.00229 * 14 13 11 18 18 H 1.07999 * 120.00062 * 5.44527 * 17 14 13 19 19 C 1.37874 * 119.99612 * 185.45119 * 17 14 13 20 20 N 1.31513 * 120.00347 * 5.18476 * 19 17 14 21 21 Si 1.86800 * 119.99562 * 185.18716 * 19 17 14 22 22 H 1.48506 * 109.47330 * 94.99956 * 21 19 17 23 23 H 1.48499 * 109.47015 * 214.99362 * 21 19 17 24 24 H 1.48495 * 109.47581 * 334.99780 * 21 19 17 25 25 H 1.08992 * 109.47263 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47283 * 299.99887 * 1 2 3 27 27 H 1.09002 * 109.46761 * 59.99455 * 1 2 3 28 28 H 1.08002 * 120.00177 * 0.02562 * 6 5 3 29 29 H 1.07995 * 119.79970 * 179.77269 * 7 6 5 30 30 H 1.07991 * 119.79580 * 179.97438 * 8 7 6 31 31 H 1.07993 * 120.00401 * 179.97438 * 9 8 7 32 32 H 0.96991 * 120.00217 * 359.97438 * 13 11 10 33 33 H 1.08999 * 109.47606 * 294.96833 * 16 14 13 34 34 H 1.08996 * 109.47498 * 54.96804 * 16 14 13 35 35 H 1.09003 * 109.46899 * 174.96572 * 16 14 13 36 36 H 0.96995 * 120.00370 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2002 0.0000 4 8 1.4021 2.2188 0.0005 5 6 3.5399 1.2776 -0.0006 6 6 4.3022 0.1190 0.1268 7 6 5.6821 0.1970 0.1315 8 6 6.3147 1.4211 0.0050 9 6 5.5743 2.5808 -0.1283 10 6 4.1836 2.5218 -0.1351 11 6 3.3867 3.7604 -0.2769 12 8 2.5593 3.8526 -1.1622 13 7 3.5786 4.7863 0.5758 14 6 2.7899 6.0130 0.4351 15 1 1.7842 5.7616 0.0985 16 6 3.4560 6.9326 -0.5903 17 6 2.7134 6.7163 1.7657 18 1 3.2747 6.3403 2.6083 19 6 1.9267 7.8397 1.9073 20 7 1.1646 8.2386 0.9125 21 14 1.9435 8.7953 3.5123 22 1 2.9098 9.9183 3.4098 23 1 0.5860 9.3335 3.7821 24 1 2.3480 7.8939 4.6209 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 3.8151 -0.8398 0.2260 29 1 6.2702 -0.7030 0.2342 30 1 7.3934 1.4708 0.0103 31 1 6.0748 3.5328 -0.2262 32 1 4.2387 4.7125 1.2826 33 1 4.4260 7.2558 -0.2126 34 1 3.5925 6.3932 -1.5276 35 1 2.8240 7.8041 -0.7614 36 1 0.6115 9.0291 1.0119 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001337043874.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:34 Heat of formation + Delta-G solvation = -117.208615 kcal Electronic energy + Delta-G solvation = -21393.258081 eV Core-core repulsion = 18034.724097 eV Total energy + Delta-G solvation = -3358.533983 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.88053 -40.55715 -39.20909 -37.50956 -36.62729 -34.35617 -32.63244 -32.54632 -30.57665 -28.73207 -27.34940 -25.57995 -24.51229 -23.09053 -21.95445 -21.16790 -19.58862 -18.81895 -18.03266 -17.63914 -17.42902 -17.18533 -16.45540 -16.26267 -15.88322 -15.49918 -14.94857 -14.69939 -14.57157 -14.42637 -14.34043 -13.82488 -13.48255 -13.20458 -12.98942 -12.93355 -12.87839 -12.72606 -12.41139 -12.38084 -12.16587 -11.85677 -11.53652 -11.15187 -10.75888 -10.62413 -10.11870 -10.04211 -9.74382 -8.21530 -6.37442 -0.46845 0.15127 1.41447 1.43330 1.49104 1.54411 1.61341 1.87299 2.33161 2.54049 2.77432 3.10337 3.63057 3.78879 3.88793 4.09433 4.25034 4.27753 4.35474 4.36073 4.57216 4.66910 4.73804 4.83986 4.92415 5.00957 5.16151 5.21132 5.33138 5.37866 5.41764 5.57588 5.61441 5.82041 5.88538 6.01091 6.67405 6.70750 6.92179 7.29549 7.54043 8.88076 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.018723 B = 0.005197 C = 0.004573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.106029 B = 5386.010912 C = 6121.734916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.351 6.351 3 C 0.482 3.518 4 O -0.516 6.516 5 C -0.116 4.116 6 C -0.059 4.059 7 C -0.103 4.103 8 C -0.070 4.070 9 C -0.104 4.104 10 C -0.089 4.089 11 C 0.542 3.458 12 O -0.576 6.576 13 N -0.698 5.698 14 C 0.272 3.728 15 H -0.008 1.008 16 C -0.123 4.123 17 C -0.547 4.547 18 H 0.073 0.927 19 C 0.012 3.988 20 N -0.922 5.922 21 Si 0.976 3.024 22 H -0.267 1.267 23 H -0.287 1.287 24 H -0.262 1.262 25 H 0.148 0.852 26 H 0.054 0.946 27 H 0.049 0.951 28 H 0.165 0.835 29 H 0.183 0.817 30 H 0.179 0.821 31 H 0.147 0.853 32 H 0.402 0.598 33 H 0.052 0.948 34 H 0.015 0.985 35 H 0.050 0.950 36 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.776 -19.884 1.254 23.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.268 6.268 3 C 0.327 3.673 4 O -0.404 6.404 5 C -0.118 4.118 6 C -0.076 4.076 7 C -0.120 4.120 8 C -0.087 4.087 9 C -0.123 4.123 10 C -0.092 4.092 11 C 0.328 3.672 12 O -0.456 6.456 13 N -0.347 5.347 14 C 0.168 3.832 15 H 0.010 0.990 16 C -0.182 4.182 17 C -0.585 4.585 18 H 0.091 0.909 19 C -0.188 4.188 20 N -0.560 5.560 21 Si 0.800 3.200 22 H -0.192 1.192 23 H -0.213 1.213 24 H -0.187 1.187 25 H 0.166 0.834 26 H 0.072 0.928 27 H 0.068 0.932 28 H 0.182 0.818 29 H 0.200 0.800 30 H 0.197 0.803 31 H 0.165 0.835 32 H 0.237 0.763 33 H 0.071 0.929 34 H 0.034 0.966 35 H 0.069 0.931 36 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 10.796 -19.355 0.579 22.169 hybrid contribution -0.968 1.179 0.626 1.648 sum 9.828 -18.176 1.205 20.698 Atomic orbital electron populations 1.23533 0.74757 1.05974 1.01869 1.86460 1.24776 1.31076 1.84445 1.21869 0.90414 0.81784 0.73235 1.91059 1.67546 1.37001 1.44841 1.19142 0.88385 0.94927 1.09339 1.21743 0.95026 0.96661 0.94216 1.21855 0.93168 0.99915 0.97079 1.21893 1.02415 0.90761 0.93660 1.21518 0.89890 1.01858 0.99000 1.20086 0.95649 0.91513 1.01978 1.18815 0.82363 0.83857 0.82151 1.90709 1.36091 1.82544 1.36274 1.46163 1.40907 1.15621 1.32020 1.18344 0.89110 0.80340 0.95373 0.99041 1.21801 1.00014 0.99834 0.96589 1.21514 1.29231 1.11757 0.96010 0.90930 1.25888 0.93860 0.98282 1.00754 1.70137 1.26528 1.25262 1.34050 0.85273 0.77432 0.78646 0.78616 1.19196 1.21259 1.18657 0.83385 0.92759 0.93210 0.81781 0.79986 0.80319 0.83535 0.76286 0.92918 0.96565 0.93142 0.92548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.77 10.56 113.37 1.20 1.96 16 2 O -0.35 -10.24 9.84 -56.17 -0.55 -10.80 16 3 C 0.48 18.33 7.80 70.36 0.55 18.88 16 4 O -0.52 -25.68 12.80 27.61 0.35 -25.33 16 5 C -0.12 -3.67 5.90 -19.88 -0.12 -3.79 16 6 C -0.06 -1.14 9.61 22.51 0.22 -0.92 16 7 C -0.10 -1.27 10.03 22.29 0.22 -1.05 16 8 C -0.07 -0.97 10.03 22.30 0.22 -0.74 16 9 C -0.10 -2.45 9.74 22.50 0.22 -2.23 16 10 C -0.09 -3.07 5.67 -19.86 -0.11 -3.19 16 11 C 0.54 25.62 5.85 86.82 0.51 26.13 16 12 O -0.58 -33.30 14.42 19.10 0.28 -33.02 16 13 N -0.70 -32.98 5.05 -448.86 -2.27 -35.25 16 14 C 0.27 15.46 2.43 44.24 0.11 15.56 16 15 H -0.01 -0.58 7.55 -2.39 -0.02 -0.60 16 16 C -0.12 -6.57 9.26 71.98 0.67 -5.91 16 17 C -0.55 -31.03 8.67 25.60 0.22 -30.80 16 18 H 0.07 3.84 7.72 -2.91 -0.02 3.82 16 19 C 0.01 0.68 5.29 84.65 0.45 1.13 16 20 N -0.92 -56.40 11.99 21.45 0.26 -56.14 16 21 Si 0.98 43.93 29.54 68.60 2.03 45.96 16 22 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 23 H -0.29 -12.87 7.11 99.48 0.71 -12.16 16 24 H -0.26 -11.23 7.11 99.48 0.71 -10.53 16 25 H 0.15 2.05 8.14 -2.39 -0.02 2.03 16 26 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 27 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 28 H 0.16 2.35 7.62 -2.91 -0.02 2.33 16 29 H 0.18 0.60 8.06 -2.91 -0.02 0.58 16 30 H 0.18 0.96 8.06 -2.92 -0.02 0.94 16 31 H 0.15 3.11 8.06 -2.91 -0.02 3.08 16 32 H 0.40 16.04 8.49 -92.72 -0.79 15.25 16 33 H 0.05 2.50 8.14 -2.39 -0.02 2.48 16 34 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.05 2.90 6.85 -2.39 -0.02 2.88 16 36 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 Total: -1.00 -86.90 317.20 4.76 -82.14 By element: Atomic # 1 Polarization: 17.08 SS G_CDS: 0.32 Total: 17.39 kcal Atomic # 6 Polarization: 10.69 SS G_CDS: 4.35 Total: 15.04 kcal Atomic # 7 Polarization: -89.38 SS G_CDS: -2.01 Total: -91.39 kcal Atomic # 8 Polarization: -69.22 SS G_CDS: 0.08 Total: -69.15 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.96 kcal Total: -86.90 4.76 -82.14 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001337043874.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.066 kcal (2) G-P(sol) polarization free energy of solvation -86.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds