Wall clock time and date at job start Mon Mar 30 2020 01:37:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45207 * 1 3 3 C 1.34705 * 116.99597 * 2 1 4 4 O 1.21453 * 119.99947 * 0.02562 * 3 2 1 5 5 C 1.47830 * 119.99703 * 179.97438 * 3 2 1 6 6 C 1.39260 * 120.20528 * 6.16782 * 5 3 2 7 7 C 1.38202 * 119.99270 * 180.02562 * 6 5 3 8 8 C 1.38364 * 120.40236 * 359.72290 * 7 6 5 9 9 C 1.38232 * 120.40695 * 0.55439 * 8 7 6 10 10 C 1.39188 * 119.99664 * 359.44924 * 9 8 7 11 11 C 1.47957 * 120.19663 * 180.29824 * 10 9 8 12 12 O 1.21537 * 119.99695 * 235.06821 * 11 10 9 13 13 N 1.34772 * 120.00453 * 55.07216 * 11 10 9 14 14 C 1.46498 * 120.00517 * 180.02562 * 13 11 10 15 15 H 1.09004 * 109.46883 * 324.99666 * 14 13 11 16 16 C 1.52999 * 109.47165 * 84.99398 * 14 13 11 17 17 C 1.50704 * 109.47222 * 204.99686 * 14 13 11 18 18 H 1.07998 * 119.99823 * 0.02562 * 17 14 13 19 19 C 1.37870 * 119.99795 * 179.97438 * 17 14 13 20 20 N 1.31516 * 120.00193 * 0.02562 * 19 17 14 21 21 Si 1.86805 * 119.99967 * 180.02562 * 19 17 14 22 22 H 1.48506 * 109.47022 * 59.99761 * 21 19 17 23 23 H 1.48498 * 109.47344 * 179.97438 * 21 19 17 24 24 H 1.48502 * 109.47181 * 300.00188 * 21 19 17 25 25 H 1.08992 * 109.47332 * 299.99697 * 1 2 3 26 26 H 1.09003 * 109.47069 * 60.00314 * 1 2 3 27 27 H 1.09001 * 109.46884 * 179.97438 * 1 2 3 28 28 H 1.08007 * 120.00070 * 359.97438 * 6 5 3 29 29 H 1.08001 * 119.80104 * 179.97438 * 7 6 5 30 30 H 1.08011 * 119.79706 * 180.30036 * 8 7 6 31 31 H 1.08002 * 119.99890 * 179.71513 * 9 8 7 32 32 H 0.97007 * 119.99850 * 359.97438 * 13 11 10 33 33 H 1.09004 * 109.47001 * 60.00340 * 16 14 13 34 34 H 1.09006 * 109.47069 * 179.97438 * 16 14 13 35 35 H 1.08997 * 109.47275 * 300.00392 * 16 14 13 36 36 H 0.97002 * 119.99744 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0635 1.2003 0.0000 4 8 1.4020 2.2188 0.0005 5 6 3.5398 1.2777 0.0006 6 6 4.3022 0.1194 -0.1282 7 6 5.6820 0.1968 -0.1266 8 6 6.3145 1.4212 -0.0033 9 6 5.5741 2.5808 0.1312 10 6 4.1835 2.5223 0.1318 11 6 3.3866 3.7614 0.2688 12 8 2.5557 3.8550 1.1509 13 7 3.5820 4.7862 -0.5843 14 6 2.7934 6.0133 -0.4483 15 1 1.7862 5.7628 -0.1153 16 6 3.4558 6.9340 0.5786 17 6 2.7223 6.7150 -1.7801 18 1 3.2148 6.2893 -2.6417 19 6 2.0275 7.9000 -1.8986 20 7 1.4272 8.4181 -0.8494 21 14 1.9387 8.7695 -3.5496 22 1 1.2959 7.8753 -4.5460 23 1 1.1384 10.0127 -3.4119 24 1 3.3107 9.1111 -4.0036 25 1 -0.3633 0.5137 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 3.8151 -0.8394 -0.2285 29 1 6.2702 -0.7035 -0.2262 30 1 7.3935 1.4709 -0.0081 31 1 6.0747 3.5325 0.2316 32 1 4.2454 4.7116 -1.2882 33 1 4.4630 7.1845 0.2456 34 1 2.8692 7.8472 0.6795 35 1 3.5073 6.4265 1.5418 36 1 0.9387 9.2520 -0.9328 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001337043877.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:36 Heat of formation + Delta-G solvation = -91.241063 kcal Electronic energy + Delta-G solvation = -21391.409586 eV Core-core repulsion = 18034.001640 eV Total energy + Delta-G solvation = -3357.407946 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.58278 -39.13251 -37.86086 -36.14356 -34.64063 -32.39735 -31.61240 -31.24524 -28.63708 -27.68256 -25.20431 -24.33007 -23.38589 -21.50482 -20.53401 -19.41381 -18.16522 -17.41820 -16.68755 -16.19069 -15.87882 -15.37452 -15.09657 -14.97176 -14.55967 -14.10063 -13.54474 -13.35301 -13.19496 -13.00654 -12.47543 -12.30978 -12.16235 -11.86163 -11.60902 -11.50394 -11.05284 -10.91521 -10.70139 -10.63585 -10.32541 -10.17747 -10.08762 -9.15876 -9.12130 -8.97202 -8.91063 -8.47996 -7.79813 -6.05852 -4.14593 0.61955 1.09834 2.68711 2.75414 3.29383 3.34188 3.35575 3.43652 3.77946 4.10474 4.41188 4.67891 4.76057 4.85122 5.12986 5.18234 5.26063 5.27429 5.28564 5.35901 5.54632 5.66825 5.81831 6.09622 6.19155 6.23661 6.50652 6.65715 6.89313 7.02172 7.21680 7.55200 7.63207 7.75930 7.96740 8.00977 8.21771 8.73499 8.85280 9.21427 9.52399 11.00281 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.018785 B = 0.005166 C = 0.004564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1490.230421 B = 5418.924439 C = 6132.885089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.363 6.363 3 C 0.486 3.514 4 O -0.450 6.450 5 C -0.086 4.086 6 C -0.070 4.070 7 C -0.126 4.126 8 C -0.090 4.090 9 C -0.104 4.104 10 C -0.054 4.054 11 C 0.544 3.456 12 O -0.520 6.520 13 N -0.701 5.701 14 C 0.266 3.734 15 H 0.051 0.949 16 C -0.146 4.146 17 C -0.531 4.531 18 H 0.060 0.940 19 C 0.066 3.934 20 N -0.884 5.884 21 Si 0.902 3.098 22 H -0.277 1.277 23 H -0.286 1.286 24 H -0.276 1.276 25 H 0.064 0.936 26 H 0.063 0.937 27 H 0.099 0.901 28 H 0.140 0.860 29 H 0.132 0.868 30 H 0.133 0.867 31 H 0.139 0.861 32 H 0.387 0.613 33 H 0.026 0.974 34 H 0.090 0.910 35 H 0.014 0.986 36 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.723 -17.539 0.283 19.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.281 6.281 3 C 0.328 3.672 4 O -0.334 6.334 5 C -0.088 4.088 6 C -0.088 4.088 7 C -0.144 4.144 8 C -0.108 4.108 9 C -0.122 4.122 10 C -0.058 4.058 11 C 0.327 3.673 12 O -0.397 6.397 13 N -0.349 5.349 14 C 0.165 3.835 15 H 0.069 0.931 16 C -0.205 4.205 17 C -0.570 4.570 18 H 0.078 0.922 19 C -0.137 4.137 20 N -0.522 5.522 21 Si 0.729 3.271 22 H -0.202 1.202 23 H -0.211 1.211 24 H -0.202 1.202 25 H 0.083 0.917 26 H 0.082 0.918 27 H 0.117 0.883 28 H 0.158 0.842 29 H 0.150 0.850 30 H 0.151 0.849 31 H 0.157 0.843 32 H 0.219 0.781 33 H 0.045 0.955 34 H 0.109 0.891 35 H 0.033 0.967 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 6.711 -16.929 0.981 18.237 hybrid contribution 0.078 0.476 -1.216 1.308 sum 6.789 -16.452 -0.234 17.800 Atomic orbital electron populations 1.23231 0.76103 1.03224 1.02966 1.86468 1.23455 1.32915 1.85263 1.21171 0.89125 0.81883 0.75051 1.91079 1.66021 1.34907 1.41400 1.19027 0.89516 0.93661 1.06550 1.21405 0.93923 0.97595 0.95870 1.21243 0.94178 0.98206 1.00779 1.21370 1.00414 0.92181 0.96825 1.21314 0.91835 0.99694 0.99406 1.20453 0.94329 0.93863 0.97139 1.17994 0.82998 0.82643 0.83689 1.90764 1.33339 1.81335 1.34250 1.46424 1.40728 1.16391 1.31341 1.18747 0.91109 0.78484 0.95161 0.93134 1.22082 0.99583 1.02461 0.96370 1.21175 1.34261 1.07109 0.94442 0.92208 1.24878 0.94959 0.96920 0.96945 1.69901 1.33338 1.20007 1.28904 0.86513 0.78098 0.78831 0.83653 1.20239 1.21140 1.20176 0.91735 0.91828 0.88281 0.84194 0.85001 0.84920 0.84320 0.78082 0.95498 0.89125 0.96670 0.92585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.45 10.56 101.05 1.07 1.52 16 2 O -0.36 -5.26 9.84 -40.51 -0.40 -5.66 16 3 C 0.49 8.78 7.80 34.65 0.27 9.05 16 4 O -0.45 -10.22 12.78 -27.21 -0.35 -10.57 16 5 C -0.09 -1.36 5.90 -104.65 -0.62 -1.98 16 6 C -0.07 -0.80 9.61 -39.21 -0.38 -1.18 16 7 C -0.13 -1.17 10.03 -39.55 -0.40 -1.57 16 8 C -0.09 -0.88 10.03 -39.54 -0.40 -1.27 16 9 C -0.10 -1.35 9.74 -39.23 -0.38 -1.73 16 10 C -0.05 -0.93 5.67 -104.62 -0.59 -1.52 16 11 C 0.54 12.09 5.86 -12.28 -0.07 12.02 16 12 O -0.52 -13.79 14.39 -18.68 -0.27 -14.06 16 13 N -0.70 -15.78 5.05 -55.84 -0.28 -16.06 16 14 C 0.27 7.16 2.56 -69.08 -0.18 6.98 16 15 H 0.05 1.59 7.58 -51.93 -0.39 1.20 16 16 C -0.15 -3.77 9.26 37.16 0.34 -3.42 16 17 C -0.53 -14.66 8.73 -34.44 -0.30 -14.96 16 18 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 19 C 0.07 1.83 5.30 -17.82 -0.09 1.74 16 20 N -0.88 -25.67 11.32 55.43 0.63 -25.04 16 21 Si 0.90 21.20 29.54 -169.99 -5.02 16.18 16 22 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 23 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 24 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 25 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.14 1.31 7.62 -52.48 -0.40 0.91 16 29 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 30 H 0.13 0.87 8.06 -52.48 -0.42 0.45 16 31 H 0.14 1.63 8.06 -52.49 -0.42 1.21 16 32 H 0.39 7.55 8.51 -40.82 -0.35 7.21 16 33 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.09 2.52 6.07 -51.93 -0.32 2.21 16 35 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 315.98 15.07 4.76 4.76 Total: -1.00 -35.14 315.98 -7.03 -42.18 By element: Atomic # 1 Polarization: 8.97 SS G_CDS: -4.38 Total: 4.59 kcal Atomic # 6 Polarization: 5.40 SS G_CDS: -1.72 Total: 3.67 kcal Atomic # 7 Polarization: -41.44 SS G_CDS: 0.35 Total: -41.10 kcal Atomic # 8 Polarization: -29.27 SS G_CDS: -1.01 Total: -30.29 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -35.14 -7.03 -42.18 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001337043877.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.066 kcal (2) G-P(sol) polarization free energy of solvation -35.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds