Wall clock time and date at job start Mon Mar 30 2020 01:37:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45207 * 1 3 3 C 1.34705 * 116.99597 * 2 1 4 4 O 1.21453 * 119.99947 * 0.02562 * 3 2 1 5 5 C 1.47830 * 119.99703 * 179.97438 * 3 2 1 6 6 C 1.39260 * 120.20528 * 6.16782 * 5 3 2 7 7 C 1.38202 * 119.99270 * 180.02562 * 6 5 3 8 8 C 1.38364 * 120.40236 * 359.72290 * 7 6 5 9 9 C 1.38232 * 120.40695 * 0.55439 * 8 7 6 10 10 C 1.39188 * 119.99664 * 359.44924 * 9 8 7 11 11 C 1.47957 * 120.19663 * 180.29824 * 10 9 8 12 12 O 1.21537 * 119.99695 * 235.06821 * 11 10 9 13 13 N 1.34772 * 120.00453 * 55.07216 * 11 10 9 14 14 C 1.46498 * 120.00517 * 180.02562 * 13 11 10 15 15 H 1.09004 * 109.46883 * 324.99666 * 14 13 11 16 16 C 1.52999 * 109.47165 * 84.99398 * 14 13 11 17 17 C 1.50704 * 109.47222 * 204.99686 * 14 13 11 18 18 H 1.07998 * 119.99823 * 0.02562 * 17 14 13 19 19 C 1.37870 * 119.99795 * 179.97438 * 17 14 13 20 20 N 1.31516 * 120.00193 * 0.02562 * 19 17 14 21 21 Si 1.86805 * 119.99967 * 180.02562 * 19 17 14 22 22 H 1.48506 * 109.47022 * 59.99761 * 21 19 17 23 23 H 1.48498 * 109.47344 * 179.97438 * 21 19 17 24 24 H 1.48502 * 109.47181 * 300.00188 * 21 19 17 25 25 H 1.08992 * 109.47332 * 299.99697 * 1 2 3 26 26 H 1.09003 * 109.47069 * 60.00314 * 1 2 3 27 27 H 1.09001 * 109.46884 * 179.97438 * 1 2 3 28 28 H 1.08007 * 120.00070 * 359.97438 * 6 5 3 29 29 H 1.08001 * 119.80104 * 179.97438 * 7 6 5 30 30 H 1.08011 * 119.79706 * 180.30036 * 8 7 6 31 31 H 1.08002 * 119.99890 * 179.71513 * 9 8 7 32 32 H 0.97007 * 119.99850 * 359.97438 * 13 11 10 33 33 H 1.09004 * 109.47001 * 60.00340 * 16 14 13 34 34 H 1.09006 * 109.47069 * 179.97438 * 16 14 13 35 35 H 1.08997 * 109.47275 * 300.00392 * 16 14 13 36 36 H 0.97002 * 119.99744 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0635 1.2003 0.0000 4 8 1.4020 2.2188 0.0005 5 6 3.5398 1.2777 0.0006 6 6 4.3022 0.1194 -0.1282 7 6 5.6820 0.1968 -0.1266 8 6 6.3145 1.4212 -0.0033 9 6 5.5741 2.5808 0.1312 10 6 4.1835 2.5223 0.1318 11 6 3.3866 3.7614 0.2688 12 8 2.5557 3.8550 1.1509 13 7 3.5820 4.7862 -0.5843 14 6 2.7934 6.0133 -0.4483 15 1 1.7862 5.7628 -0.1153 16 6 3.4558 6.9340 0.5786 17 6 2.7223 6.7150 -1.7801 18 1 3.2148 6.2893 -2.6417 19 6 2.0275 7.9000 -1.8986 20 7 1.4272 8.4181 -0.8494 21 14 1.9387 8.7695 -3.5496 22 1 1.2959 7.8753 -4.5460 23 1 1.1384 10.0127 -3.4119 24 1 3.3107 9.1111 -4.0036 25 1 -0.3633 0.5137 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 3.8151 -0.8394 -0.2285 29 1 6.2702 -0.7035 -0.2262 30 1 7.3935 1.4709 -0.0081 31 1 6.0747 3.5325 0.2316 32 1 4.2454 4.7116 -1.2882 33 1 4.4630 7.1845 0.2456 34 1 2.8692 7.8472 0.6795 35 1 3.5073 6.4265 1.5418 36 1 0.9387 9.2520 -0.9328 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001337043877.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:36 Heat of formation + Delta-G solvation = -115.497195 kcal Electronic energy + Delta-G solvation = -21392.461411 eV Core-core repulsion = 18034.001640 eV Total energy + Delta-G solvation = -3358.459770 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.88243 -40.55857 -39.21260 -37.51000 -36.65197 -34.37111 -32.63499 -32.52974 -30.51500 -28.73090 -27.37642 -25.57480 -24.51121 -23.07882 -21.95165 -21.16823 -19.58708 -18.81815 -18.03358 -17.64334 -17.42737 -17.18583 -16.46679 -16.27835 -15.88873 -15.49817 -14.94545 -14.71115 -14.57372 -14.43655 -14.34289 -13.77447 -13.45799 -13.20556 -13.01577 -12.87947 -12.87749 -12.75344 -12.41405 -12.29245 -12.17755 -11.85719 -11.53935 -11.15366 -10.78579 -10.59972 -10.12145 -10.04353 -9.74352 -8.19303 -6.37781 -0.47136 0.14777 1.41577 1.45357 1.48928 1.53105 1.61244 1.87197 2.32841 2.53994 2.77102 3.10446 3.62928 3.78612 3.88472 4.09182 4.25116 4.27719 4.35182 4.35822 4.57055 4.66757 4.74170 4.88435 4.92149 5.05332 5.15920 5.20911 5.32962 5.37679 5.42013 5.58335 5.65482 5.81859 5.89235 6.07041 6.67284 6.68968 6.91941 7.29404 7.53727 8.87369 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.018785 B = 0.005166 C = 0.004564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1490.230421 B = 5418.924439 C = 6132.885089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.351 6.351 3 C 0.482 3.518 4 O -0.516 6.516 5 C -0.116 4.116 6 C -0.058 4.058 7 C -0.103 4.103 8 C -0.070 4.070 9 C -0.105 4.105 10 C -0.089 4.089 11 C 0.541 3.459 12 O -0.576 6.576 13 N -0.698 5.698 14 C 0.274 3.726 15 H -0.012 1.012 16 C -0.130 4.130 17 C -0.549 4.549 18 H 0.071 0.929 19 C 0.013 3.987 20 N -0.919 5.919 21 Si 0.977 3.023 22 H -0.274 1.274 23 H -0.283 1.283 24 H -0.259 1.259 25 H 0.049 0.951 26 H 0.054 0.946 27 H 0.148 0.852 28 H 0.165 0.835 29 H 0.183 0.817 30 H 0.179 0.821 31 H 0.146 0.854 32 H 0.402 0.598 33 H 0.046 0.954 34 H 0.067 0.933 35 H 0.009 0.991 36 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.103 -20.163 -1.409 23.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.268 6.268 3 C 0.327 3.673 4 O -0.404 6.404 5 C -0.118 4.118 6 C -0.076 4.076 7 C -0.120 4.120 8 C -0.087 4.087 9 C -0.123 4.123 10 C -0.092 4.092 11 C 0.328 3.672 12 O -0.456 6.456 13 N -0.347 5.347 14 C 0.170 3.830 15 H 0.005 0.995 16 C -0.189 4.189 17 C -0.587 4.587 18 H 0.089 0.911 19 C -0.187 4.187 20 N -0.557 5.557 21 Si 0.801 3.199 22 H -0.199 1.199 23 H -0.209 1.209 24 H -0.183 1.183 25 H 0.068 0.932 26 H 0.073 0.927 27 H 0.166 0.834 28 H 0.183 0.817 29 H 0.200 0.800 30 H 0.197 0.803 31 H 0.164 0.836 32 H 0.237 0.763 33 H 0.065 0.935 34 H 0.086 0.914 35 H 0.029 0.971 36 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 10.139 -19.611 -0.729 22.089 hybrid contribution -0.945 1.120 -0.646 1.601 sum 9.195 -18.491 -1.374 20.696 Atomic orbital electron populations 1.23537 0.74742 1.05979 1.01881 1.86463 1.24790 1.31063 1.84439 1.21856 0.90395 0.81790 0.73241 1.91057 1.67536 1.36996 1.44839 1.19137 0.88419 0.94892 1.09332 1.21744 0.95016 0.96678 0.94192 1.21855 0.93184 0.99895 0.97072 1.21894 1.02412 0.90762 0.93666 1.21514 0.89922 1.01846 0.99018 1.20080 0.95626 0.91510 1.02010 1.18820 0.82419 0.83868 0.82112 1.90709 1.35952 1.82529 1.36407 1.46167 1.40683 1.15649 1.32228 1.18324 0.88936 0.80277 0.95417 0.99458 1.21870 0.99988 1.01056 0.95965 1.21485 1.34823 1.07530 0.94827 0.91058 1.25868 0.94205 0.97656 1.00996 1.70068 1.33862 1.20390 1.31360 0.85331 0.78850 0.77313 0.78416 1.19911 1.20859 1.18302 0.93185 0.92740 0.83400 0.81749 0.79972 0.80334 0.83618 0.76277 0.93463 0.91413 0.97150 0.92479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.76 10.56 113.37 1.20 1.96 16 2 O -0.35 -10.18 9.84 -56.15 -0.55 -10.73 16 3 C 0.48 18.25 7.80 70.36 0.55 18.80 16 4 O -0.52 -25.53 12.78 27.62 0.35 -25.18 16 5 C -0.12 -3.66 5.90 -19.88 -0.12 -3.78 16 6 C -0.06 -1.13 9.61 22.51 0.22 -0.92 16 7 C -0.10 -1.27 10.03 22.29 0.22 -1.05 16 8 C -0.07 -0.98 10.03 22.30 0.22 -0.75 16 9 C -0.10 -2.48 9.74 22.50 0.22 -2.26 16 10 C -0.09 -3.08 5.67 -19.86 -0.11 -3.19 16 11 C 0.54 25.66 5.86 86.82 0.51 26.17 16 12 O -0.58 -33.31 14.39 19.13 0.28 -33.03 16 13 N -0.70 -33.13 5.05 -448.87 -2.27 -35.40 16 14 C 0.27 15.64 2.56 44.25 0.11 15.76 16 15 H -0.01 -0.86 7.58 -2.38 -0.02 -0.88 16 16 C -0.13 -7.04 9.26 71.98 0.67 -6.37 16 17 C -0.55 -31.16 8.73 25.60 0.22 -30.94 16 18 H 0.07 3.78 7.74 -2.91 -0.02 3.76 16 19 C 0.01 0.71 5.30 84.65 0.45 1.16 16 20 N -0.92 -55.45 11.32 21.44 0.24 -55.21 16 21 Si 0.98 43.82 29.54 68.60 2.03 45.84 16 22 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 23 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 24 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 25 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 26 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 27 H 0.15 2.02 8.14 -2.39 -0.02 2.00 16 28 H 0.16 2.34 7.62 -2.91 -0.02 2.32 16 29 H 0.18 0.61 8.06 -2.91 -0.02 0.58 16 30 H 0.18 0.99 8.06 -2.91 -0.02 0.97 16 31 H 0.15 3.15 8.06 -2.91 -0.02 3.13 16 32 H 0.40 16.15 8.51 -92.70 -0.79 15.36 16 33 H 0.05 2.29 8.14 -2.38 -0.02 2.27 16 34 H 0.07 3.97 6.07 -2.38 -0.01 3.96 16 35 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 36 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 Total: -1.00 -86.14 315.98 4.76 -81.38 By element: Atomic # 1 Polarization: 17.42 SS G_CDS: 0.32 Total: 17.73 kcal Atomic # 6 Polarization: 10.23 SS G_CDS: 4.36 Total: 14.59 kcal Atomic # 7 Polarization: -88.58 SS G_CDS: -2.02 Total: -90.61 kcal Atomic # 8 Polarization: -69.01 SS G_CDS: 0.08 Total: -68.94 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.84 kcal Total: -86.14 4.76 -81.38 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001337043877.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.116 kcal (2) G-P(sol) polarization free energy of solvation -86.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds