Wall clock time and date at job start Mon Mar 30 2020 01:39:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50697 * 109.47466 * 120.00144 * 2 1 3 5 5 H 1.07998 * 120.00039 * 119.99581 * 4 2 1 6 6 C 1.37880 * 119.99815 * 300.00179 * 4 2 1 7 7 N 1.31508 * 119.99915 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99777 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47152 * 359.97438 * 8 6 4 10 10 H 1.48494 * 109.47204 * 119.99883 * 8 6 4 11 11 H 1.48496 * 109.47191 * 240.00215 * 8 6 4 12 12 O 1.45206 * 109.47147 * 240.00299 * 2 1 3 13 13 C 1.34229 * 116.99848 * 89.99847 * 12 2 1 14 14 O 1.20826 * 120.00265 * 0.02562 * 13 12 2 15 15 C 1.50704 * 119.99888 * 179.97438 * 13 12 2 16 16 C 1.53002 * 109.47134 * 180.02562 * 15 13 12 17 17 C 1.50694 * 109.47014 * 180.02562 * 16 15 13 18 18 O 1.21254 * 120.00175 * 359.97438 * 17 16 15 19 19 C 1.47167 * 119.99856 * 180.02562 * 17 16 15 20 20 C 1.40298 * 120.58505 * 179.71419 * 19 17 16 21 21 C 1.38289 * 118.26524 * 179.75289 * 20 19 17 22 22 C 1.38401 * 119.32960 * 0.54301 * 21 20 19 23 23 N 1.31959 * 121.13767 * 359.69981 * 22 21 20 24 24 C 1.31644 * 121.90980 * 0.02562 * 23 22 21 25 25 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 26 26 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 28 28 H 0.97001 * 119.99839 * 180.02562 * 7 6 4 29 29 H 1.08996 * 109.47295 * 300.00299 * 15 13 12 30 30 H 1.08998 * 109.46637 * 60.00115 * 15 13 12 31 31 H 1.09006 * 109.46707 * 299.99777 * 16 15 13 32 32 H 1.08997 * 109.47580 * 59.99612 * 16 15 13 33 33 H 1.08001 * 120.86886 * 0.02562 * 20 19 17 34 34 H 1.07995 * 120.33836 * 180.26029 * 21 20 19 35 35 H 1.07991 * 119.43142 * 179.72192 * 22 21 20 36 36 H 1.08006 * 119.73818 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9436 0.8301 2.6034 8 14 2.3215 -1.1204 4.0079 9 1 3.1456 -2.2878 3.6036 10 1 3.1467 -0.1875 4.8164 11 1 1.1663 -1.5869 4.8160 12 8 2.0140 -0.6844 -1.1856 13 6 2.2171 0.0641 -2.2811 14 8 1.9982 1.2520 -2.2503 15 6 2.7193 -0.5768 -3.5493 16 6 2.8644 0.4895 -4.6369 17 6 3.3659 -0.1516 -5.9051 18 8 3.5862 -1.3436 -5.9359 19 6 3.5896 0.6693 -7.1059 20 6 4.0620 0.0862 -8.2913 21 6 4.2501 0.9015 -9.3924 22 6 3.9801 2.2549 -9.2878 23 7 3.5414 2.7780 -8.1586 24 6 3.3407 2.0447 -7.0838 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 -0.8900 28 1 0.7096 1.1617 3.4844 29 1 3.6884 -1.0398 -3.3633 30 1 2.0105 -1.3370 -3.8774 31 1 1.8954 0.9527 -4.8230 32 1 3.5733 1.2494 -4.3085 33 1 4.2690 -0.9724 -8.3440 34 1 4.6085 0.4872 -10.3231 35 1 4.1308 2.8939 -10.1453 36 1 2.9811 2.5095 -6.1776 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001343504745.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:46 Heat of formation + Delta-G solvation = -99.695311 kcal Electronic energy + Delta-G solvation = -20160.438271 eV Core-core repulsion = 16802.663722 eV Total energy + Delta-G solvation = -3357.774549 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.84896 -39.66279 -38.96323 -35.86196 -33.31893 -33.15031 -32.91464 -31.77352 -29.60256 -26.77427 -25.32313 -24.35689 -23.63981 -21.56144 -20.15266 -19.45067 -17.91043 -17.16154 -16.74834 -16.50597 -16.26170 -16.07844 -15.29470 -14.97409 -14.66632 -14.37537 -14.17065 -14.06876 -13.52790 -13.12037 -12.86346 -12.60793 -12.31904 -11.96272 -11.68161 -11.31251 -11.14097 -11.06734 -10.84290 -10.37342 -10.34133 -10.29912 -10.25464 -9.75753 -9.66944 -9.60428 -9.53952 -8.90402 -8.50223 -6.19171 -4.25848 0.11769 0.81378 2.07595 2.97402 3.23480 3.28526 3.32429 3.39321 3.42884 3.88627 4.10200 4.33665 4.36650 4.47061 4.54199 4.64666 4.95445 5.03356 5.07087 5.14169 5.31375 5.47518 5.59577 5.73278 5.79722 5.84334 5.93815 6.15564 6.63114 6.87798 6.90485 7.14733 7.19569 7.47720 7.59749 7.72124 7.92880 8.13655 8.61939 8.87990 9.39768 10.88353 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.043604 B = 0.002873 C = 0.002786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.987570 B = 9742.633684 C =10046.428196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.214 3.786 3 H 0.047 0.953 4 C -0.521 4.521 5 H 0.069 0.931 6 C 0.062 3.938 7 N -0.889 5.889 8 Si 0.912 3.088 9 H -0.270 1.270 10 H -0.282 1.282 11 H -0.281 1.281 12 O -0.355 6.355 13 C 0.453 3.547 14 O -0.525 6.525 15 C -0.107 4.107 16 C -0.155 4.155 17 C 0.404 3.596 18 O -0.447 6.447 19 C -0.220 4.220 20 C -0.020 4.020 21 C -0.187 4.187 22 C 0.125 3.875 23 N -0.491 5.491 24 C 0.150 3.850 25 H 0.099 0.901 26 H 0.037 0.963 27 H 0.016 0.984 28 H 0.266 0.734 29 H 0.106 0.894 30 H 0.105 0.895 31 H 0.112 0.888 32 H 0.112 0.888 33 H 0.145 0.855 34 H 0.141 0.859 35 H 0.161 0.839 36 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.245 0.394 -21.914 22.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.162 3.838 3 H 0.065 0.935 4 C -0.559 4.559 5 H 0.088 0.912 6 C -0.140 4.140 7 N -0.527 5.527 8 Si 0.739 3.261 9 H -0.195 1.195 10 H -0.207 1.207 11 H -0.207 1.207 12 O -0.271 6.271 13 C 0.296 3.704 14 O -0.416 6.416 15 C -0.145 4.145 16 C -0.193 4.193 17 C 0.281 3.719 18 O -0.321 6.321 19 C -0.223 4.223 20 C -0.046 4.046 21 C -0.206 4.206 22 C -0.031 4.031 23 N -0.200 5.200 24 C -0.008 4.008 25 H 0.118 0.882 26 H 0.056 0.944 27 H 0.035 0.965 28 H 0.075 0.925 29 H 0.124 0.876 30 H 0.123 0.877 31 H 0.130 0.870 32 H 0.130 0.870 33 H 0.163 0.837 34 H 0.159 0.841 35 H 0.178 0.822 36 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 5.028 1.111 -21.682 22.285 hybrid contribution 0.354 -1.078 0.761 1.366 sum 5.382 0.034 -20.921 21.602 Atomic orbital electron populations 1.22161 0.97552 1.00123 1.01408 1.20653 0.91412 0.93930 0.77839 0.93504 1.21078 1.32405 1.13468 0.88907 0.91242 1.24895 0.94935 0.95109 0.99103 1.69906 1.36160 1.22590 1.24077 0.86218 0.78637 0.79507 0.81773 1.19461 1.20748 1.20710 1.86492 1.75588 1.43672 1.21389 1.23257 0.74912 0.85953 0.86314 1.90595 1.49175 1.16915 1.84932 1.21077 1.04737 0.98643 0.90071 1.21854 1.05021 0.99902 0.92479 1.22361 0.73342 0.88028 0.88185 1.90545 1.39449 1.16861 1.85260 1.21611 1.07040 0.96687 0.96990 1.21915 0.90517 1.01091 0.91043 1.22177 1.03229 0.95235 0.99987 1.23103 0.91232 0.93212 0.95586 1.67784 1.12680 1.39790 0.99716 1.23367 0.91192 0.89345 0.96876 0.88235 0.94426 0.96517 0.92452 0.87584 0.87670 0.87020 0.86955 0.83695 0.84067 0.82211 0.81245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.92 9.33 37.16 0.35 -3.58 16 2 C 0.21 5.75 2.56 -27.89 -0.07 5.68 16 3 H 0.05 1.38 7.16 -51.93 -0.37 1.01 16 4 C -0.52 -14.68 8.90 -34.44 -0.31 -14.99 16 5 H 0.07 1.94 7.81 -52.49 -0.41 1.53 16 6 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 7 N -0.89 -25.28 11.32 55.43 0.63 -24.65 16 8 Si 0.91 21.12 29.54 -169.99 -5.02 16.10 16 9 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 10 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 11 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 12 O -0.36 -8.43 9.86 -39.25 -0.39 -8.82 16 13 C 0.45 9.04 7.93 36.01 0.29 9.33 16 14 O -0.53 -11.61 15.20 -18.75 -0.29 -11.89 16 15 C -0.11 -1.53 5.10 -27.88 -0.14 -1.67 16 16 C -0.16 -1.76 3.63 -27.88 -0.10 -1.87 16 17 C 0.40 4.44 7.12 -30.69 -0.22 4.22 16 18 O -0.45 -5.98 16.05 5.58 0.09 -5.89 16 19 C -0.22 -2.12 5.89 -104.92 -0.62 -2.74 16 20 C -0.02 -0.17 9.72 -38.79 -0.38 -0.54 16 21 C -0.19 -1.22 10.10 -39.50 -0.40 -1.62 16 22 C 0.12 0.91 11.17 -17.44 -0.19 0.72 16 23 N -0.49 -4.82 10.34 -12.83 -0.13 -4.96 16 24 C 0.15 1.41 10.65 -17.05 -0.18 1.23 16 25 H 0.10 2.69 6.07 -51.93 -0.32 2.38 16 26 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 27 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 29 H 0.11 1.43 8.10 -51.93 -0.42 1.01 16 30 H 0.11 1.40 8.10 -51.93 -0.42 0.98 16 31 H 0.11 1.17 8.06 -51.93 -0.42 0.76 16 32 H 0.11 1.20 8.05 -51.93 -0.42 0.78 16 33 H 0.15 1.10 7.73 -52.49 -0.41 0.70 16 34 H 0.14 0.52 8.06 -52.49 -0.42 0.09 16 35 H 0.16 0.69 8.06 -52.49 -0.42 0.26 16 36 H 0.17 1.33 7.08 -52.48 -0.37 0.96 16 LS Contribution 319.89 15.07 4.82 4.82 Total: -1.00 -32.97 319.89 -6.74 -39.70 By element: Atomic # 1 Polarization: 4.19 SS G_CDS: -4.38 Total: -0.19 kcal Atomic # 6 Polarization: -2.16 SS G_CDS: -2.07 Total: -4.23 kcal Atomic # 7 Polarization: -30.11 SS G_CDS: 0.49 Total: -29.61 kcal Atomic # 8 Polarization: -26.02 SS G_CDS: -0.58 Total: -26.60 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -32.97 -6.74 -39.70 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001343504745.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.990 kcal (2) G-P(sol) polarization free energy of solvation -32.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds