Wall clock time and date at job start Mon Mar 30 2020 01:39:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50697 * 109.47466 * 120.00144 * 2 1 3 5 5 H 1.07998 * 120.00039 * 119.99581 * 4 2 1 6 6 C 1.37880 * 119.99815 * 300.00179 * 4 2 1 7 7 N 1.31508 * 119.99915 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99777 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47152 * 359.97438 * 8 6 4 10 10 H 1.48494 * 109.47204 * 119.99883 * 8 6 4 11 11 H 1.48496 * 109.47191 * 240.00215 * 8 6 4 12 12 O 1.45206 * 109.47147 * 240.00299 * 2 1 3 13 13 C 1.34229 * 116.99848 * 89.99847 * 12 2 1 14 14 O 1.20826 * 120.00265 * 0.02562 * 13 12 2 15 15 C 1.50704 * 119.99888 * 179.97438 * 13 12 2 16 16 C 1.53002 * 109.47134 * 180.02562 * 15 13 12 17 17 C 1.50694 * 109.47014 * 180.02562 * 16 15 13 18 18 O 1.21254 * 120.00175 * 359.97438 * 17 16 15 19 19 C 1.47167 * 119.99856 * 180.02562 * 17 16 15 20 20 C 1.40298 * 120.58505 * 179.71419 * 19 17 16 21 21 C 1.38289 * 118.26524 * 179.75289 * 20 19 17 22 22 C 1.38401 * 119.32960 * 0.54301 * 21 20 19 23 23 N 1.31959 * 121.13767 * 359.69981 * 22 21 20 24 24 C 1.31644 * 121.90980 * 0.02562 * 23 22 21 25 25 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 26 26 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 28 28 H 0.97001 * 119.99839 * 180.02562 * 7 6 4 29 29 H 1.08996 * 109.47295 * 300.00299 * 15 13 12 30 30 H 1.08998 * 109.46637 * 60.00115 * 15 13 12 31 31 H 1.09006 * 109.46707 * 299.99777 * 16 15 13 32 32 H 1.08997 * 109.47580 * 59.99612 * 16 15 13 33 33 H 1.08001 * 120.86886 * 0.02562 * 20 19 17 34 34 H 1.07995 * 120.33836 * 180.26029 * 21 20 19 35 35 H 1.07991 * 119.43142 * 179.72192 * 22 21 20 36 36 H 1.08006 * 119.73818 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9436 0.8301 2.6034 8 14 2.3215 -1.1204 4.0079 9 1 3.1456 -2.2878 3.6036 10 1 3.1467 -0.1875 4.8164 11 1 1.1663 -1.5869 4.8160 12 8 2.0140 -0.6844 -1.1856 13 6 2.2171 0.0641 -2.2811 14 8 1.9982 1.2520 -2.2503 15 6 2.7193 -0.5768 -3.5493 16 6 2.8644 0.4895 -4.6369 17 6 3.3659 -0.1516 -5.9051 18 8 3.5862 -1.3436 -5.9359 19 6 3.5896 0.6693 -7.1059 20 6 4.0620 0.0862 -8.2913 21 6 4.2501 0.9015 -9.3924 22 6 3.9801 2.2549 -9.2878 23 7 3.5414 2.7780 -8.1586 24 6 3.3407 2.0447 -7.0838 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 -0.8900 28 1 0.7096 1.1617 3.4844 29 1 3.6884 -1.0398 -3.3633 30 1 2.0105 -1.3370 -3.8774 31 1 1.8954 0.9527 -4.8230 32 1 3.5733 1.2494 -4.3085 33 1 4.2690 -0.9724 -8.3440 34 1 4.6085 0.4872 -10.3231 35 1 4.1308 2.8939 -10.1453 36 1 2.9811 2.5095 -6.1776 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001343504745.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:46 Heat of formation + Delta-G solvation = -119.274642 kcal Electronic energy + Delta-G solvation = -20161.287295 eV Core-core repulsion = 16802.663722 eV Total energy + Delta-G solvation = -3358.623573 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.66827 -41.18330 -39.90735 -37.67932 -35.33262 -34.28444 -33.56411 -32.56052 -31.60644 -27.85203 -27.43569 -25.19200 -24.40350 -23.25465 -21.41955 -20.78351 -19.04022 -18.60201 -18.25388 -17.48735 -17.36820 -17.28338 -16.87306 -16.24509 -16.16973 -15.44694 -15.06961 -14.92003 -14.67327 -14.36807 -14.14907 -14.03873 -13.72182 -13.19655 -13.15950 -13.00298 -12.94970 -12.81242 -12.39357 -12.27780 -12.15127 -11.58101 -11.35793 -11.08671 -10.98689 -10.97695 -10.60428 -10.46529 -10.21952 -8.29476 -6.46023 -0.56698 0.21243 1.29065 1.33964 1.41876 1.42547 1.56305 1.95607 2.39614 2.79662 2.90362 3.01443 3.49324 3.53571 3.82713 3.84365 3.96487 4.02300 4.06301 4.27386 4.45033 4.52469 4.58530 4.74043 4.74110 4.78748 4.84288 4.90542 5.00101 5.12794 5.17809 5.49049 5.59052 5.63719 5.92819 6.09939 6.32862 6.59400 6.86325 6.96709 7.26176 8.78388 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.043604 B = 0.002873 C = 0.002786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.987570 B = 9742.633684 C =10046.428196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.216 3.784 3 H 0.011 0.989 4 C -0.549 4.549 5 H 0.066 0.934 6 C 0.016 3.984 7 N -0.916 5.916 8 Si 0.983 3.017 9 H -0.264 1.264 10 H -0.275 1.275 11 H -0.271 1.271 12 O -0.367 6.367 13 C 0.448 3.552 14 O -0.548 6.548 15 C -0.096 4.096 16 C -0.152 4.152 17 C 0.418 3.582 18 O -0.475 6.475 19 C -0.235 4.235 20 C -0.029 4.029 21 C -0.176 4.176 22 C 0.123 3.877 23 N -0.518 5.518 24 C 0.144 3.856 25 H 0.081 0.919 26 H 0.044 0.956 27 H 0.026 0.974 28 H 0.271 0.729 29 H 0.117 0.883 30 H 0.119 0.881 31 H 0.121 0.879 32 H 0.119 0.881 33 H 0.150 0.850 34 H 0.175 0.825 35 H 0.191 0.809 36 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.970 -0.192 -23.241 23.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.162 3.838 3 H 0.029 0.971 4 C -0.587 4.587 5 H 0.084 0.916 6 C -0.184 4.184 7 N -0.554 5.554 8 Si 0.806 3.194 9 H -0.189 1.189 10 H -0.200 1.200 11 H -0.197 1.197 12 O -0.283 6.283 13 C 0.293 3.707 14 O -0.440 6.440 15 C -0.133 4.133 16 C -0.189 4.189 17 C 0.296 3.704 18 O -0.351 6.351 19 C -0.238 4.238 20 C -0.054 4.054 21 C -0.195 4.195 22 C -0.033 4.033 23 N -0.227 5.227 24 C -0.014 4.014 25 H 0.099 0.901 26 H 0.063 0.937 27 H 0.045 0.955 28 H 0.080 0.920 29 H 0.135 0.865 30 H 0.138 0.862 31 H 0.139 0.861 32 H 0.137 0.863 33 H 0.168 0.832 34 H 0.193 0.807 35 H 0.208 0.792 36 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 5.751 0.537 -23.036 23.749 hybrid contribution 0.148 -0.814 1.036 1.326 sum 5.898 -0.277 -22.000 22.779 Atomic orbital electron populations 1.21986 0.96719 1.00371 1.00963 1.20356 0.92067 0.92164 0.79174 0.97114 1.21343 1.33354 1.13871 0.90099 0.91608 1.25826 0.94728 0.95690 1.02135 1.70016 1.36604 1.23622 1.25178 0.85137 0.78355 0.78412 0.77513 1.18854 1.20033 1.19651 1.86483 1.76136 1.44014 1.21701 1.24349 0.73917 0.85801 0.86667 1.90579 1.50092 1.18086 1.85223 1.21157 1.05146 0.99424 0.87566 1.21865 1.05947 0.99223 0.91899 1.22284 0.72229 0.87579 0.88266 1.90541 1.41079 1.17860 1.85651 1.21474 1.08709 0.96650 0.96931 1.22140 0.90361 1.01718 0.91211 1.22519 1.01761 0.94682 1.00576 1.23690 0.89788 0.94152 0.95623 1.67815 1.13802 1.40520 1.00596 1.23477 0.91306 0.89307 0.97319 0.90089 0.93686 0.95458 0.91966 0.86517 0.86245 0.86086 0.86260 0.83197 0.80737 0.79228 0.80694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.36 9.33 71.98 0.67 -6.69 16 2 C 0.22 11.88 2.56 29.85 0.08 11.96 16 3 H 0.01 0.67 7.16 -2.39 -0.02 0.66 16 4 C -0.55 -31.44 8.90 25.60 0.23 -31.21 16 5 H 0.07 3.71 7.81 -2.91 -0.02 3.69 16 6 C 0.02 0.88 5.30 84.66 0.45 1.33 16 7 N -0.92 -52.65 11.32 21.45 0.24 -52.40 16 8 Si 0.98 43.06 29.54 68.60 2.03 45.09 16 9 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 10 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 11 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 12 O -0.37 -17.67 9.86 -51.40 -0.51 -18.18 16 13 C 0.45 18.01 7.93 71.24 0.56 18.58 16 14 O -0.55 -24.63 15.20 21.96 0.33 -24.30 16 15 C -0.10 -2.65 5.10 29.85 0.15 -2.50 16 16 C -0.15 -3.34 3.63 29.85 0.11 -3.23 16 17 C 0.42 8.81 7.12 28.03 0.20 9.01 16 18 O -0.47 -12.31 16.05 -2.95 -0.05 -12.36 16 19 C -0.23 -4.27 5.89 -20.05 -0.12 -4.39 16 20 C -0.03 -0.43 9.72 22.78 0.22 -0.21 16 21 C -0.18 -1.80 10.10 22.32 0.23 -1.58 16 22 C 0.12 1.49 11.17 84.71 0.95 2.44 16 23 N -0.52 -9.44 10.34 -194.51 -2.01 -11.45 16 24 C 0.14 2.56 10.65 85.10 0.91 3.47 16 25 H 0.08 4.48 6.07 -2.39 -0.01 4.46 16 26 H 0.04 2.19 8.14 -2.39 -0.02 2.17 16 27 H 0.03 1.28 8.14 -2.38 -0.02 1.26 16 28 H 0.27 14.48 8.31 -92.71 -0.77 13.71 16 29 H 0.12 3.04 8.10 -2.39 -0.02 3.02 16 30 H 0.12 3.03 8.10 -2.39 -0.02 3.01 16 31 H 0.12 2.44 8.06 -2.38 -0.02 2.43 16 32 H 0.12 2.47 8.05 -2.39 -0.02 2.45 16 33 H 0.15 2.05 7.73 -2.91 -0.02 2.02 16 34 H 0.18 0.57 8.06 -2.91 -0.02 0.55 16 35 H 0.19 0.99 8.06 -2.92 -0.02 0.97 16 36 H 0.18 2.68 7.08 -2.91 -0.02 2.66 16 Total: -1.00 -71.54 319.89 5.76 -65.78 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: 1.09 Total: 10.83 kcal Atomic # 6 Polarization: -7.64 SS G_CDS: 4.63 Total: -3.01 kcal Atomic # 7 Polarization: -62.09 SS G_CDS: -1.77 Total: -63.85 kcal Atomic # 8 Polarization: -54.61 SS G_CDS: -0.22 Total: -54.83 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.09 kcal Total: -71.54 5.76 -65.78 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001343504745.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.495 kcal (2) G-P(sol) polarization free energy of solvation -71.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds