Wall clock time and date at job start Mon Mar 30 2020 01:59:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.35590 * 118.80490 * 2 1 4 4 C 1.34857 * 121.81928 * 180.02562 * 3 2 1 5 5 C 1.41677 * 119.34060 * 0.02562 * 4 3 2 6 6 O 1.22080 * 121.06895 * 179.97438 * 5 4 3 7 7 C 1.47134 * 117.85499 * 359.97438 * 5 4 3 8 8 C 1.47137 * 120.88694 * 179.97438 * 7 5 4 9 9 O 1.21541 * 120.00020 * 0.02562 * 8 7 5 10 10 O 1.34783 * 120.00257 * 179.97438 * 8 7 5 11 11 C 1.45200 * 117.00342 * 179.97438 * 10 8 7 12 12 H 1.09002 * 109.46620 * 30.00186 * 11 10 8 13 13 C 1.50701 * 109.47024 * 149.99751 * 11 10 8 14 14 H 1.07999 * 120.00531 * 0.02562 * 13 11 10 15 15 C 1.37885 * 119.99645 * 179.97438 * 13 11 10 16 16 N 1.31511 * 119.99763 * 0.02562 * 15 13 11 17 17 Si 1.86796 * 119.99682 * 180.02562 * 15 13 11 18 18 H 1.48512 * 109.46746 * 90.00565 * 17 15 13 19 19 H 1.48501 * 109.47074 * 209.99975 * 17 15 13 20 20 H 1.48499 * 109.47450 * 330.00523 * 17 15 13 21 21 C 1.52996 * 109.47367 * 270.00327 * 11 10 8 22 22 C 1.53002 * 117.49888 * 356.25163 * 21 11 10 23 23 C 1.53000 * 117.50107 * 64.90925 * 21 11 10 24 24 C 1.34316 * 118.79597 * 180.30988 * 2 1 3 25 25 H 1.09003 * 109.47071 * 89.99872 * 1 2 3 26 26 H 1.08999 * 109.47177 * 210.00246 * 1 2 3 27 27 H 1.09003 * 109.46599 * 329.99908 * 1 2 3 28 28 H 1.08005 * 119.09003 * 0.02562 * 3 2 1 29 29 H 1.08000 * 120.32780 * 180.02562 * 4 3 2 30 30 H 0.97007 * 119.99127 * 179.97438 * 16 15 13 31 31 H 1.09002 * 115.54951 * 210.58137 * 21 11 10 32 32 H 1.09000 * 117.49996 * 215.00804 * 22 21 11 33 33 H 1.08999 * 117.49664 * 0.02562 * 22 21 11 34 34 H 1.09008 * 117.49673 * 359.97438 * 23 21 11 35 35 H 1.08999 * 117.49959 * 144.99502 * 23 21 11 36 36 H 1.08000 * 119.82228 * 359.97438 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1183 1.1881 0.0000 4 6 3.4650 1.2590 -0.0005 5 6 4.2232 0.0622 -0.0016 6 8 5.4437 0.0896 -0.0026 7 6 3.4922 -1.2147 -0.0016 8 6 4.2128 -2.4975 -0.0033 9 8 5.4281 -2.5119 -0.0042 10 8 3.5252 -3.6568 -0.0027 11 6 4.3016 -4.8838 -0.0050 12 1 5.2489 -4.7152 0.5072 13 6 3.5317 -5.9666 0.7063 14 1 2.5564 -5.7541 1.1185 15 6 4.0722 -7.2291 0.8299 16 7 5.2597 -7.4880 0.3275 17 14 3.1177 -8.5715 1.7109 18 1 2.2709 -9.3002 0.7324 19 1 4.0683 -9.5196 2.3456 20 1 2.2552 -7.9620 2.7548 21 6 4.5715 -5.3138 -1.4482 22 6 3.9377 -4.4806 -2.5640 23 6 5.4443 -4.3966 -2.3072 24 6 2.1120 -1.1771 -0.0064 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 -0.8899 0.5139 27 1 -0.3632 0.8900 0.5139 28 1 1.5443 2.1030 0.0004 29 1 3.9606 2.2186 -0.0001 30 1 5.6401 -8.3761 0.4149 31 1 4.6590 -6.3882 -1.6101 32 1 3.6080 -5.0067 -3.4599 33 1 3.3287 -3.6258 -2.2698 34 1 5.8259 -3.4865 -1.8442 35 1 6.1061 -4.8675 -3.0341 36 1 1.5496 -2.0991 -0.0109 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001344923113.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:42 Heat of formation + Delta-G solvation = -51.732460 kcal Electronic energy + Delta-G solvation = -21608.660064 eV Core-core repulsion = 18252.965340 eV Total energy + Delta-G solvation = -3355.694724 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.97902 -39.27128 -37.75170 -36.10907 -34.47907 -32.78282 -32.60176 -31.95336 -27.91005 -27.07861 -24.92368 -23.31350 -22.68775 -21.36686 -20.84524 -19.01818 -17.83979 -17.43672 -16.84646 -16.41199 -15.93929 -15.68886 -15.42187 -15.05591 -14.46455 -14.34609 -13.91337 -13.57795 -13.31847 -13.12659 -12.62815 -12.44700 -12.32827 -12.10297 -11.47851 -11.22925 -11.04806 -10.95376 -10.51193 -10.26211 -9.99538 -9.72912 -9.68727 -9.37674 -9.11370 -8.95411 -8.44950 -8.38377 -7.96639 -6.13996 -4.21450 0.91373 1.32493 2.29222 3.25672 3.28230 3.31474 3.34575 3.69671 4.07504 4.17646 4.31276 4.37360 4.68143 4.72422 4.88193 5.00697 5.04339 5.14349 5.18040 5.55847 5.71763 5.85364 5.94706 6.16815 6.23638 6.43429 6.50904 6.52039 6.70115 6.83004 7.03909 7.13640 7.30214 7.65483 7.66587 7.93808 8.19328 8.27189 8.75245 9.00426 9.42750 10.93201 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.020851 B = 0.005315 C = 0.004770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.524656 B = 5266.422209 C = 5868.942496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.055 3.945 2 N -0.479 5.479 3 C 0.124 3.876 4 C -0.267 4.267 5 C 0.405 3.595 6 O -0.479 6.479 7 C -0.282 4.282 8 C 0.506 3.494 9 O -0.488 6.488 10 O -0.361 6.361 11 C 0.250 3.750 12 H 0.052 0.948 13 C -0.518 4.518 14 H 0.069 0.931 15 C 0.064 3.936 16 N -0.883 5.883 17 Si 0.909 3.091 18 H -0.278 1.278 19 H -0.284 1.284 20 H -0.272 1.272 21 C -0.113 4.113 22 C -0.196 4.196 23 C -0.207 4.207 24 C 0.191 3.809 25 H 0.080 0.920 26 H 0.094 0.906 27 H 0.090 0.910 28 H 0.163 0.837 29 H 0.153 0.847 30 H 0.266 0.734 31 H 0.126 0.874 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.098 0.902 35 H 0.076 0.924 36 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.236 15.275 -1.877 20.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 N -0.166 5.166 3 C 0.000 4.000 4 C -0.291 4.291 5 C 0.290 3.710 6 O -0.360 6.360 7 C -0.290 4.290 8 C 0.349 3.651 9 O -0.376 6.376 10 O -0.279 6.279 11 C 0.198 3.802 12 H 0.070 0.930 13 C -0.556 4.556 14 H 0.087 0.913 15 C -0.139 4.139 16 N -0.520 5.520 17 Si 0.736 3.264 18 H -0.204 1.204 19 H -0.210 1.210 20 H -0.197 1.197 21 C -0.132 4.132 22 C -0.233 4.233 23 C -0.244 4.244 24 C 0.062 3.938 25 H 0.099 0.901 26 H 0.113 0.887 27 H 0.109 0.891 28 H 0.180 0.820 29 H 0.170 0.830 30 H 0.076 0.924 31 H 0.144 0.856 32 H 0.094 0.906 33 H 0.099 0.901 34 H 0.116 0.884 35 H 0.094 0.906 36 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -13.264 15.102 -1.889 20.188 hybrid contribution -0.458 -0.811 0.263 0.967 sum -13.722 14.291 -1.626 19.879 Atomic orbital electron populations 1.22482 0.76182 1.05597 1.04343 1.42746 1.08667 1.04586 1.60594 1.21676 0.94297 0.88410 0.95590 1.22436 0.93131 1.01194 1.12362 1.18211 0.89338 0.86916 0.76486 1.90826 1.14293 1.88931 1.41961 1.21931 0.92250 0.95060 1.19790 1.20156 0.86223 0.84306 0.74418 1.90824 1.14400 1.87767 1.44574 1.86482 1.42940 1.15420 1.83008 1.20094 0.92336 0.76159 0.91645 0.92996 1.20926 1.04516 0.93896 1.36225 0.91318 1.24911 0.95119 0.98303 0.95593 1.70009 1.15590 1.22023 1.44353 0.86330 0.79449 0.81017 0.79638 1.20435 1.21005 1.19696 1.22999 0.99440 0.98650 0.92096 1.22777 0.95715 1.03773 1.01051 1.23164 0.92505 1.03984 1.04779 1.22571 0.93574 0.89106 0.88588 0.90107 0.88724 0.89145 0.81992 0.82975 0.92431 0.85627 0.90568 0.90130 0.88419 0.90586 0.80137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.16 10.52 59.85 0.63 0.79 16 2 N -0.48 -3.79 2.97 -124.37 -0.37 -4.16 16 3 C 0.12 0.95 10.17 -17.09 -0.17 0.77 16 4 C -0.27 -3.19 10.01 -39.47 -0.40 -3.58 16 5 C 0.40 7.42 6.97 -34.66 -0.24 7.18 16 6 O -0.48 -11.21 16.41 -15.19 -0.25 -11.46 16 7 C -0.28 -5.08 6.05 -102.74 -0.62 -5.70 16 8 C 0.51 11.74 6.75 34.34 0.23 11.97 16 9 O -0.49 -13.28 12.57 -26.08 -0.33 -13.61 16 10 O -0.36 -8.55 7.76 -40.72 -0.32 -8.86 16 11 C 0.25 6.78 2.39 -27.88 -0.07 6.72 16 12 H 0.05 1.61 7.16 -51.93 -0.37 1.23 16 13 C -0.52 -14.34 8.90 -34.44 -0.31 -14.65 16 14 H 0.07 1.84 7.81 -52.49 -0.41 1.43 16 15 C 0.06 1.74 5.16 -17.82 -0.09 1.65 16 16 N -0.88 -25.27 11.66 55.43 0.65 -24.62 16 17 Si 0.91 20.85 29.54 -169.99 -5.02 15.83 16 18 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 19 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 20 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 21 C -0.11 -2.89 5.23 -90.62 -0.47 -3.36 16 22 C -0.20 -4.27 9.74 -26.69 -0.26 -4.53 16 23 C -0.21 -4.90 9.87 -26.70 -0.26 -5.16 16 24 C 0.19 2.33 9.87 -16.52 -0.16 2.17 16 25 H 0.08 0.16 8.14 -51.93 -0.42 -0.27 16 26 H 0.09 0.23 7.96 -51.93 -0.41 -0.18 16 27 H 0.09 0.06 7.96 -51.93 -0.41 -0.36 16 28 H 0.16 0.45 7.97 -52.48 -0.42 0.03 16 29 H 0.15 1.52 8.06 -52.49 -0.42 1.10 16 30 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 31 H 0.13 3.45 6.54 -51.93 -0.34 3.11 16 32 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 33 H 0.08 1.70 6.67 -51.93 -0.35 1.35 16 34 H 0.10 2.49 5.56 -51.92 -0.29 2.21 16 35 H 0.08 1.66 8.14 -51.93 -0.42 1.24 16 36 H 0.18 1.93 7.55 -52.49 -0.40 1.53 16 LS Contribution 309.84 15.07 4.67 4.67 Total: -1.00 -37.90 309.84 -7.39 -45.29 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: -4.22 Total: 2.66 kcal Atomic # 6 Polarization: -3.55 SS G_CDS: -2.20 Total: -5.75 kcal Atomic # 7 Polarization: -29.05 SS G_CDS: 0.28 Total: -28.78 kcal Atomic # 8 Polarization: -33.03 SS G_CDS: -0.89 Total: -33.93 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -37.90 -7.39 -45.29 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344923113.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.441 kcal (2) G-P(sol) polarization free energy of solvation -37.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds