Wall clock time and date at job start Mon Mar 30 2020 01:59:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.35590 * 118.80490 * 2 1 4 4 C 1.34857 * 121.81928 * 180.02562 * 3 2 1 5 5 C 1.41677 * 119.34060 * 0.02562 * 4 3 2 6 6 O 1.22080 * 121.06895 * 179.97438 * 5 4 3 7 7 C 1.47134 * 117.85499 * 359.97438 * 5 4 3 8 8 C 1.47137 * 120.88694 * 179.97438 * 7 5 4 9 9 O 1.21541 * 120.00020 * 0.02562 * 8 7 5 10 10 O 1.34783 * 120.00257 * 179.97438 * 8 7 5 11 11 C 1.45200 * 117.00342 * 179.97438 * 10 8 7 12 12 H 1.09002 * 109.46620 * 30.00186 * 11 10 8 13 13 C 1.50701 * 109.47024 * 149.99751 * 11 10 8 14 14 H 1.07999 * 120.00531 * 0.02562 * 13 11 10 15 15 C 1.37885 * 119.99645 * 179.97438 * 13 11 10 16 16 N 1.31511 * 119.99763 * 0.02562 * 15 13 11 17 17 Si 1.86796 * 119.99682 * 180.02562 * 15 13 11 18 18 H 1.48512 * 109.46746 * 90.00565 * 17 15 13 19 19 H 1.48501 * 109.47074 * 209.99975 * 17 15 13 20 20 H 1.48499 * 109.47450 * 330.00523 * 17 15 13 21 21 C 1.52996 * 109.47367 * 270.00327 * 11 10 8 22 22 C 1.53002 * 117.49888 * 356.25163 * 21 11 10 23 23 C 1.53000 * 117.50107 * 64.90925 * 21 11 10 24 24 C 1.34316 * 118.79597 * 180.30988 * 2 1 3 25 25 H 1.09003 * 109.47071 * 89.99872 * 1 2 3 26 26 H 1.08999 * 109.47177 * 210.00246 * 1 2 3 27 27 H 1.09003 * 109.46599 * 329.99908 * 1 2 3 28 28 H 1.08005 * 119.09003 * 0.02562 * 3 2 1 29 29 H 1.08000 * 120.32780 * 180.02562 * 4 3 2 30 30 H 0.97007 * 119.99127 * 179.97438 * 16 15 13 31 31 H 1.09002 * 115.54951 * 210.58137 * 21 11 10 32 32 H 1.09000 * 117.49996 * 215.00804 * 22 21 11 33 33 H 1.08999 * 117.49664 * 0.02562 * 22 21 11 34 34 H 1.09008 * 117.49673 * 359.97438 * 23 21 11 35 35 H 1.08999 * 117.49959 * 144.99502 * 23 21 11 36 36 H 1.08000 * 119.82228 * 359.97438 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1183 1.1881 0.0000 4 6 3.4650 1.2590 -0.0005 5 6 4.2232 0.0622 -0.0016 6 8 5.4437 0.0896 -0.0026 7 6 3.4922 -1.2147 -0.0016 8 6 4.2128 -2.4975 -0.0033 9 8 5.4281 -2.5119 -0.0042 10 8 3.5252 -3.6568 -0.0027 11 6 4.3016 -4.8838 -0.0050 12 1 5.2489 -4.7152 0.5072 13 6 3.5317 -5.9666 0.7063 14 1 2.5564 -5.7541 1.1185 15 6 4.0722 -7.2291 0.8299 16 7 5.2597 -7.4880 0.3275 17 14 3.1177 -8.5715 1.7109 18 1 2.2709 -9.3002 0.7324 19 1 4.0683 -9.5196 2.3456 20 1 2.2552 -7.9620 2.7548 21 6 4.5715 -5.3138 -1.4482 22 6 3.9377 -4.4806 -2.5640 23 6 5.4443 -4.3966 -2.3072 24 6 2.1120 -1.1771 -0.0064 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 -0.8899 0.5139 27 1 -0.3632 0.8900 0.5139 28 1 1.5443 2.1030 0.0004 29 1 3.9606 2.2186 -0.0001 30 1 5.6401 -8.3761 0.4149 31 1 4.6590 -6.3882 -1.6101 32 1 3.6080 -5.0067 -3.4599 33 1 3.3287 -3.6258 -2.2698 34 1 5.8259 -3.4865 -1.8442 35 1 6.1061 -4.8675 -3.0341 36 1 1.5496 -2.0991 -0.0109 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001344923113.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:42 Heat of formation + Delta-G solvation = -77.566338 kcal Electronic energy + Delta-G solvation = -21609.780305 eV Core-core repulsion = 18252.965340 eV Total energy + Delta-G solvation = -3356.814965 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.05087 -40.99678 -39.05854 -37.99791 -36.38265 -34.86229 -33.56445 -33.05258 -29.91253 -27.75061 -26.22577 -25.16111 -23.87602 -23.22847 -22.38756 -20.92725 -19.27815 -18.77854 -18.28556 -17.74792 -17.43132 -17.33308 -16.70355 -16.53408 -16.11700 -15.61249 -15.36143 -14.93177 -14.59465 -14.29912 -14.16374 -13.77903 -13.34046 -13.23266 -13.18170 -12.98418 -12.77566 -12.65549 -12.35789 -12.20981 -11.93914 -11.47582 -11.33500 -11.04646 -10.72555 -10.49578 -10.45328 -10.40025 -9.11498 -8.23722 -6.41501 -0.23957 0.38185 1.43140 1.46624 1.52669 1.57601 1.73387 2.02913 2.44904 2.74825 3.04047 3.13232 3.41397 3.71468 3.77413 3.99819 4.05380 4.24037 4.25910 4.34174 4.47349 4.60865 4.67885 4.71208 4.79721 4.90856 4.93885 4.97629 5.23837 5.27984 5.35661 5.53952 5.57335 5.70854 5.81973 5.92067 6.13511 6.65982 7.04737 7.12145 7.30606 8.84430 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.020851 B = 0.005315 C = 0.004770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.524656 B = 5266.422209 C = 5868.942496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 N -0.457 5.457 3 C 0.169 3.831 4 C -0.293 4.293 5 C 0.382 3.618 6 O -0.568 6.568 7 C -0.348 4.348 8 C 0.500 3.500 9 O -0.547 6.547 10 O -0.353 6.353 11 C 0.255 3.745 12 H -0.008 1.008 13 C -0.540 4.540 14 H 0.076 0.924 15 C 0.013 3.987 16 N -0.918 5.918 17 Si 0.985 3.015 18 H -0.264 1.264 19 H -0.284 1.284 20 H -0.261 1.261 21 C -0.137 4.137 22 C -0.157 4.157 23 C -0.213 4.213 24 C 0.244 3.756 25 H 0.104 0.896 26 H 0.105 0.895 27 H 0.131 0.869 28 H 0.236 0.764 29 H 0.168 0.832 30 H 0.268 0.732 31 H 0.105 0.895 32 H 0.110 0.890 33 H 0.089 0.911 34 H 0.071 0.929 35 H 0.093 0.907 36 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.068 16.822 -2.229 26.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 N -0.139 5.139 3 C 0.045 3.955 4 C -0.316 4.316 5 C 0.275 3.725 6 O -0.457 6.457 7 C -0.357 4.357 8 C 0.347 3.653 9 O -0.439 6.439 10 O -0.270 6.270 11 C 0.202 3.798 12 H 0.010 0.990 13 C -0.577 4.577 14 H 0.095 0.905 15 C -0.186 4.186 16 N -0.555 5.555 17 Si 0.808 3.192 18 H -0.189 1.189 19 H -0.210 1.210 20 H -0.185 1.185 21 C -0.156 4.156 22 C -0.194 4.194 23 C -0.250 4.250 24 C 0.108 3.892 25 H 0.122 0.878 26 H 0.123 0.877 27 H 0.149 0.851 28 H 0.252 0.748 29 H 0.185 0.815 30 H 0.077 0.923 31 H 0.123 0.877 32 H 0.129 0.871 33 H 0.107 0.893 34 H 0.090 0.910 35 H 0.111 0.889 36 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -19.205 16.708 -2.248 25.554 hybrid contribution 1.104 -1.151 0.382 1.640 sum -18.101 15.557 -1.866 23.940 Atomic orbital electron populations 1.23076 0.71632 1.08307 1.06755 1.43459 1.11284 1.03423 1.55752 1.22605 0.93068 0.90173 0.89697 1.22350 0.94840 0.99070 1.15310 1.19076 0.88982 0.89080 0.75336 1.90774 1.17435 1.89979 1.47483 1.21632 0.94709 0.92275 1.27052 1.21137 0.86128 0.85358 0.72697 1.90786 1.17068 1.88347 1.47673 1.86447 1.42081 1.15058 1.83404 1.19704 0.90255 0.77548 0.92299 0.99023 1.21241 1.04903 0.94510 1.37052 0.90549 1.25924 0.95966 1.00723 0.96020 1.70173 1.17356 1.22678 1.45328 0.85152 0.77990 0.77409 0.78638 1.18892 1.20970 1.18492 1.22711 1.02726 0.97808 0.92365 1.22870 0.93913 1.02552 1.00083 1.23098 0.94525 1.02603 1.04751 1.22689 0.91336 0.91670 0.83479 0.87762 0.87679 0.85114 0.74766 0.81473 0.92283 0.87684 0.87149 0.89308 0.91029 0.88904 0.78080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 -0.08 10.52 127.77 1.34 1.26 16 2 N -0.46 -4.51 2.97 -547.40 -1.63 -6.14 16 3 C 0.17 1.56 10.17 83.34 0.85 2.41 16 4 C -0.29 -6.49 10.01 22.34 0.22 -6.27 16 5 C 0.38 14.88 6.97 25.46 0.18 15.06 16 6 O -0.57 -29.65 16.41 13.58 0.22 -29.42 16 7 C -0.35 -13.01 6.05 -18.64 -0.11 -13.12 16 8 C 0.50 25.07 6.75 70.16 0.47 25.54 16 9 O -0.55 -33.31 12.57 26.19 0.33 -32.98 16 10 O -0.35 -17.56 7.76 -56.94 -0.44 -18.00 16 11 C 0.26 14.77 2.39 29.85 0.07 14.85 16 12 H -0.01 -0.54 7.16 -2.39 -0.02 -0.56 16 13 C -0.54 -30.90 8.90 25.60 0.23 -30.67 16 14 H 0.08 4.12 7.81 -2.91 -0.02 4.10 16 15 C 0.01 0.75 5.16 84.66 0.44 1.18 16 16 N -0.92 -54.85 11.66 21.45 0.25 -54.60 16 17 Si 0.99 42.96 29.54 68.60 2.03 44.99 16 18 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 19 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 20 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 21 C -0.14 -7.35 5.23 -10.79 -0.06 -7.41 16 22 C -0.16 -6.84 9.74 30.62 0.30 -6.54 16 23 C -0.21 -10.60 9.87 30.62 0.30 -10.29 16 24 C 0.24 5.25 9.87 84.27 0.83 6.08 16 25 H 0.10 -0.46 8.14 -2.39 -0.02 -0.48 16 26 H 0.10 -0.26 7.96 -2.39 -0.02 -0.27 16 27 H 0.13 -1.09 7.96 -2.39 -0.02 -1.11 16 28 H 0.24 -0.98 7.97 -2.91 -0.02 -1.00 16 29 H 0.17 3.11 8.06 -2.91 -0.02 3.09 16 30 H 0.27 15.01 8.31 -92.70 -0.77 14.24 16 31 H 0.11 6.05 6.54 -2.39 -0.02 6.03 16 32 H 0.11 4.05 8.14 -2.39 -0.02 4.03 16 33 H 0.09 3.69 6.67 -2.39 -0.02 3.67 16 34 H 0.07 3.99 5.56 -2.38 -0.01 3.98 16 35 H 0.09 4.21 8.14 -2.39 -0.02 4.19 16 36 H 0.20 3.55 7.55 -2.91 -0.02 3.53 16 Total: -1.00 -99.42 309.84 6.93 -92.49 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: 1.10 Total: 11.59 kcal Atomic # 6 Polarization: -12.99 SS G_CDS: 5.07 Total: -7.93 kcal Atomic # 7 Polarization: -59.36 SS G_CDS: -1.38 Total: -60.74 kcal Atomic # 8 Polarization: -80.51 SS G_CDS: 0.11 Total: -80.40 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.99 kcal Total: -99.42 6.93 -92.49 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344923113.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.923 kcal (2) G-P(sol) polarization free energy of solvation -99.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds