Wall clock time and date at job start Mon Mar 30 2020 01:58:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34668 * 119.70582 * 2 1 4 4 O 1.21963 * 119.95793 * 0.03118 * 3 2 1 5 5 C 1.41283 * 120.08771 * 180.29477 * 3 2 1 6 6 C 1.36091 * 119.51554 * 359.43216 * 5 3 2 7 7 C 1.40420 * 119.42493 * 0.56711 * 6 5 3 8 8 C 1.36337 * 119.89911 * 359.71620 * 7 6 5 9 9 C 1.47769 * 119.75874 * 179.97438 * 8 7 6 10 10 O 1.21453 * 119.99858 * 174.95994 * 9 8 7 11 11 O 1.34753 * 119.99966 * 354.95639 * 9 8 7 12 12 C 1.45191 * 117.00066 * 185.09389 * 11 9 8 13 13 C 1.53003 * 109.47045 * 184.81102 * 12 11 9 14 14 C 1.50706 * 115.54880 * 183.98074 * 13 12 11 15 15 H 1.07993 * 120.00030 * 143.02766 * 14 13 12 16 16 C 1.37882 * 119.99910 * 323.01833 * 14 13 12 17 17 N 1.31507 * 119.99985 * 169.03118 * 16 14 13 18 18 Si 1.86801 * 119.99953 * 349.03980 * 16 14 13 19 19 H 1.48498 * 109.47580 * 95.46415 * 18 16 14 20 20 H 1.48502 * 109.46873 * 215.46869 * 18 16 14 21 21 H 1.48505 * 109.47146 * 335.46533 * 18 16 14 22 22 C 1.52997 * 117.50025 * 38.31019 * 13 12 11 23 23 C 1.53003 * 117.50014 * 329.64572 * 13 12 11 24 24 H 1.09003 * 109.47551 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.47270 * 119.99429 * 1 2 3 26 26 H 1.09004 * 109.46737 * 239.99612 * 1 2 3 27 27 H 1.08002 * 120.24174 * 179.72811 * 5 3 2 28 28 H 1.08007 * 120.28872 * 180.28643 * 6 5 3 29 29 H 1.07994 * 120.04996 * 179.74114 * 7 6 5 30 30 H 1.09002 * 109.47313 * 304.80686 * 12 11 9 31 31 H 1.09005 * 109.47285 * 64.81310 * 12 11 9 32 32 H 0.97003 * 120.00375 * 180.02562 * 17 16 14 33 33 H 1.08995 * 117.49821 * 359.97438 * 22 13 12 34 34 H 1.08993 * 117.50265 * 145.02409 * 22 13 12 35 35 H 1.09000 * 117.49720 * 214.98130 * 23 13 12 36 36 H 1.09002 * 117.49531 * 359.97438 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1323 1.1697 0.0000 4 8 1.5163 2.2223 0.0006 5 6 3.5451 1.1791 -0.0063 6 6 4.2235 -0.0006 -0.0006 7 6 3.5071 -1.2083 -0.0007 8 6 2.1439 -1.1899 -0.0005 9 6 1.3931 -2.4626 -0.0012 10 8 0.1822 -2.4534 0.0913 11 8 2.0521 -3.6335 -0.1045 12 6 1.2460 -4.8362 -0.2130 13 6 2.1582 -6.0645 -0.1995 14 6 1.4678 -7.3891 -0.3997 15 1 1.9491 -8.1678 -0.9726 16 6 0.2217 -7.6068 0.1489 17 7 -0.4734 -8.6678 -0.1984 18 14 -0.4793 -6.3946 1.3853 19 1 -1.3590 -5.4253 0.6842 20 1 -1.2677 -7.1297 2.4068 21 1 0.6317 -5.6653 2.0480 22 6 3.3708 -6.0337 0.7328 23 6 3.5649 -5.9062 -0.7803 24 1 -0.3634 1.0277 0.0005 25 1 -0.3634 -0.5137 -0.8900 26 1 -0.3633 -0.5139 0.8900 27 1 4.0828 2.1158 -0.0107 28 1 5.3036 -0.0080 -0.0006 29 1 4.0352 -2.1504 -0.0004 30 1 0.5550 -4.8877 0.6284 31 1 0.6820 -4.8127 -1.1455 32 1 -1.3502 -8.8209 0.1872 33 1 3.5190 -5.1382 1.3363 34 1 3.6696 -6.9714 1.2012 35 1 3.9910 -6.7603 -1.3066 36 1 3.8402 -4.9272 -1.1723 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001346751940.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:55 Heat of formation + Delta-G solvation = -35.536741 kcal Electronic energy + Delta-G solvation = -21545.939930 eV Core-core repulsion = 18190.947505 eV Total energy + Delta-G solvation = -3354.992425 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.76545 -40.12354 -37.62457 -36.91674 -35.79168 -34.58062 -32.39456 -30.89323 -27.95925 -27.79317 -25.83285 -24.72100 -22.85642 -21.64212 -21.49041 -19.33571 -18.24710 -17.72823 -17.41925 -16.92386 -16.72361 -16.32643 -15.81974 -15.36588 -14.86932 -14.82652 -14.10596 -13.71741 -13.26834 -13.12525 -12.88848 -12.85612 -12.59852 -12.39726 -12.00721 -11.94497 -11.33013 -10.99161 -10.67521 -10.56865 -10.54961 -10.38751 -10.20917 -9.87507 -9.65760 -9.40067 -8.85162 -8.49084 -8.31477 -6.36438 -4.32021 0.06001 1.36467 1.98365 2.41970 2.78617 3.12433 3.20261 3.25319 3.37030 4.15645 4.29281 4.35710 4.56344 4.60011 4.88623 4.99226 5.20606 5.29028 5.31281 5.48973 5.54537 5.61791 5.65326 5.72423 5.79417 5.89348 6.02611 6.09336 6.34543 6.41658 6.50169 6.67420 6.73514 6.85981 7.10307 7.45095 7.60864 7.73904 8.27598 8.68667 9.24878 10.75438 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.027602 B = 0.005165 C = 0.004521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.190685 B = 5419.772323 C = 6191.242750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.059 3.941 2 N -0.478 5.478 3 C 0.514 3.486 4 O -0.549 6.549 5 C -0.211 4.211 6 C -0.031 4.031 7 C -0.148 4.148 8 C 0.126 3.874 9 C 0.498 3.502 10 O -0.492 6.492 11 O -0.334 6.334 12 C 0.087 3.913 13 C 0.003 3.997 14 C -0.484 4.484 15 H 0.088 0.912 16 C 0.079 3.921 17 N -0.881 5.881 18 Si 0.870 3.130 19 H -0.272 1.272 20 H -0.288 1.288 21 H -0.259 1.259 22 C -0.199 4.199 23 C -0.177 4.177 24 H 0.096 0.904 25 H 0.085 0.915 26 H 0.089 0.911 27 H 0.155 0.845 28 H 0.147 0.853 29 H 0.165 0.835 30 H 0.070 0.930 31 H 0.081 0.919 32 H 0.270 0.730 33 H 0.072 0.928 34 H 0.086 0.914 35 H 0.083 0.917 36 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.198 15.029 0.801 17.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 N -0.192 5.192 3 C 0.315 3.685 4 O -0.432 6.432 5 C -0.233 4.233 6 C -0.053 4.053 7 C -0.172 4.172 8 C 0.018 3.982 9 C 0.341 3.659 10 O -0.381 6.381 11 O -0.249 6.249 12 C 0.015 3.985 13 C 0.002 3.998 14 C -0.520 4.520 15 H 0.105 0.895 16 C -0.126 4.126 17 N -0.516 5.516 18 Si 0.700 3.300 19 H -0.199 1.199 20 H -0.215 1.215 21 H -0.185 1.185 22 C -0.237 4.237 23 C -0.214 4.214 24 H 0.115 0.885 25 H 0.104 0.896 26 H 0.108 0.892 27 H 0.173 0.827 28 H 0.165 0.835 29 H 0.183 0.817 30 H 0.088 0.912 31 H 0.099 0.901 32 H 0.080 0.920 33 H 0.091 0.909 34 H 0.104 0.896 35 H 0.102 0.898 36 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 7.163 15.500 0.850 17.096 hybrid contribution -0.601 0.383 0.705 1.003 sum 6.562 15.883 1.555 17.255 Atomic orbital electron populations 1.22390 0.75936 1.04825 1.05058 1.45420 1.10045 1.04917 1.58781 1.17307 0.89310 0.82340 0.79529 1.90939 1.69878 1.28893 1.53462 1.22473 0.92563 1.00466 1.07821 1.21521 1.01349 0.91281 0.91115 1.21252 0.90923 1.00937 1.04083 1.19130 0.92059 0.84525 1.02450 1.20626 0.85838 0.84873 0.74585 1.90890 1.14692 1.88011 1.44494 1.86507 1.41788 1.14731 1.81892 1.23801 0.93699 0.78640 1.02312 1.19383 0.86931 0.92039 1.01464 1.20291 1.02070 0.95334 1.34348 0.89451 1.25005 0.96300 0.95472 0.95792 1.69876 1.12181 1.27934 1.41620 0.87188 0.79458 0.80728 0.82609 1.19855 1.21534 1.18490 1.23134 1.07368 1.01034 0.92138 1.22764 1.01665 1.00882 0.96122 0.88530 0.89624 0.89232 0.82703 0.83503 0.81748 0.91227 0.90103 0.92000 0.90946 0.89568 0.89815 0.90186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.77 8.94 59.85 0.53 1.30 16 2 N -0.48 -6.49 3.02 -122.81 -0.37 -6.86 16 3 C 0.51 7.04 7.43 -15.15 -0.11 6.93 16 4 O -0.55 -9.15 16.39 4.95 0.08 -9.06 16 5 C -0.21 -2.12 10.00 -39.20 -0.39 -2.51 16 6 C -0.03 -0.25 10.08 -39.53 -0.40 -0.65 16 7 C -0.15 -1.50 9.57 -39.45 -0.38 -1.88 16 8 C 0.13 1.66 6.63 -82.35 -0.55 1.12 16 9 C 0.50 8.07 7.83 34.63 0.27 8.34 16 10 O -0.49 -9.00 12.90 -19.23 -0.25 -9.25 16 11 O -0.33 -5.80 7.66 -40.64 -0.31 -6.11 16 12 C 0.09 1.82 4.32 37.16 0.16 1.98 16 13 C 0.00 0.06 1.81 -155.66 -0.28 -0.22 16 14 C -0.48 -12.76 9.57 -34.44 -0.33 -13.09 16 15 H 0.09 2.48 8.06 -52.49 -0.42 2.06 16 16 C 0.08 2.15 5.43 -17.82 -0.10 2.05 16 17 N -0.88 -25.39 13.96 55.43 0.77 -24.62 16 18 Si 0.87 20.85 24.23 -169.99 -4.12 16.73 16 19 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 20 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 21 H -0.26 -5.97 6.38 56.52 0.36 -5.61 16 22 C -0.20 -3.88 9.66 -26.69 -0.26 -4.14 16 23 C -0.18 -3.31 9.63 -26.69 -0.26 -3.57 16 24 H 0.10 1.21 6.86 -51.93 -0.36 0.86 16 25 H 0.09 1.11 7.36 -51.93 -0.38 0.73 16 26 H 0.09 1.19 7.09 -51.93 -0.37 0.82 16 27 H 0.16 1.23 8.06 -52.49 -0.42 0.81 16 28 H 0.15 0.66 8.06 -52.48 -0.42 0.24 16 29 H 0.17 1.48 7.52 -52.49 -0.39 1.09 16 30 H 0.07 1.58 2.37 -51.93 -0.12 1.45 16 31 H 0.08 1.70 8.14 -51.93 -0.42 1.28 16 32 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 33 H 0.07 1.29 7.79 -51.93 -0.40 0.89 16 34 H 0.09 1.70 8.14 -51.93 -0.42 1.28 16 35 H 0.08 1.56 8.14 -51.93 -0.42 1.13 16 36 H 0.08 1.31 7.53 -51.93 -0.39 0.92 16 LS Contribution 303.08 15.07 4.57 4.57 Total: -1.00 -30.82 303.08 -5.84 -36.66 By element: Atomic # 1 Polarization: 6.41 SS G_CDS: -4.13 Total: 2.27 kcal Atomic # 6 Polarization: -2.25 SS G_CDS: -2.08 Total: -4.33 kcal Atomic # 7 Polarization: -31.88 SS G_CDS: 0.40 Total: -31.48 kcal Atomic # 8 Polarization: -23.95 SS G_CDS: -0.48 Total: -24.43 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -4.12 Total: 16.73 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -30.82 -5.84 -36.66 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346751940.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.125 kcal (2) G-P(sol) polarization free energy of solvation -30.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds