Wall clock time and date at job start Mon Mar 30 2020 01:58:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34668 * 119.70582 * 2 1 4 4 O 1.21963 * 119.95793 * 0.03118 * 3 2 1 5 5 C 1.41283 * 120.08771 * 180.29477 * 3 2 1 6 6 C 1.36091 * 119.51554 * 359.43216 * 5 3 2 7 7 C 1.40420 * 119.42493 * 0.56711 * 6 5 3 8 8 C 1.36337 * 119.89911 * 359.71620 * 7 6 5 9 9 C 1.47769 * 119.75874 * 179.97438 * 8 7 6 10 10 O 1.21453 * 119.99858 * 174.95994 * 9 8 7 11 11 O 1.34753 * 119.99966 * 354.95639 * 9 8 7 12 12 C 1.45191 * 117.00066 * 185.09389 * 11 9 8 13 13 C 1.53003 * 109.47045 * 184.81102 * 12 11 9 14 14 C 1.50706 * 115.54880 * 183.98074 * 13 12 11 15 15 H 1.07993 * 120.00030 * 143.02766 * 14 13 12 16 16 C 1.37882 * 119.99910 * 323.01833 * 14 13 12 17 17 N 1.31507 * 119.99985 * 169.03118 * 16 14 13 18 18 Si 1.86801 * 119.99953 * 349.03980 * 16 14 13 19 19 H 1.48498 * 109.47580 * 95.46415 * 18 16 14 20 20 H 1.48502 * 109.46873 * 215.46869 * 18 16 14 21 21 H 1.48505 * 109.47146 * 335.46533 * 18 16 14 22 22 C 1.52997 * 117.50025 * 38.31019 * 13 12 11 23 23 C 1.53003 * 117.50014 * 329.64572 * 13 12 11 24 24 H 1.09003 * 109.47551 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.47270 * 119.99429 * 1 2 3 26 26 H 1.09004 * 109.46737 * 239.99612 * 1 2 3 27 27 H 1.08002 * 120.24174 * 179.72811 * 5 3 2 28 28 H 1.08007 * 120.28872 * 180.28643 * 6 5 3 29 29 H 1.07994 * 120.04996 * 179.74114 * 7 6 5 30 30 H 1.09002 * 109.47313 * 304.80686 * 12 11 9 31 31 H 1.09005 * 109.47285 * 64.81310 * 12 11 9 32 32 H 0.97003 * 120.00375 * 180.02562 * 17 16 14 33 33 H 1.08995 * 117.49821 * 359.97438 * 22 13 12 34 34 H 1.08993 * 117.50265 * 145.02409 * 22 13 12 35 35 H 1.09000 * 117.49720 * 214.98130 * 23 13 12 36 36 H 1.09002 * 117.49531 * 359.97438 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1323 1.1697 0.0000 4 8 1.5163 2.2223 0.0006 5 6 3.5451 1.1791 -0.0063 6 6 4.2235 -0.0006 -0.0006 7 6 3.5071 -1.2083 -0.0007 8 6 2.1439 -1.1899 -0.0005 9 6 1.3931 -2.4626 -0.0012 10 8 0.1822 -2.4534 0.0913 11 8 2.0521 -3.6335 -0.1045 12 6 1.2460 -4.8362 -0.2130 13 6 2.1582 -6.0645 -0.1995 14 6 1.4678 -7.3891 -0.3997 15 1 1.9491 -8.1678 -0.9726 16 6 0.2217 -7.6068 0.1489 17 7 -0.4734 -8.6678 -0.1984 18 14 -0.4793 -6.3946 1.3853 19 1 -1.3590 -5.4253 0.6842 20 1 -1.2677 -7.1297 2.4068 21 1 0.6317 -5.6653 2.0480 22 6 3.3708 -6.0337 0.7328 23 6 3.5649 -5.9062 -0.7803 24 1 -0.3634 1.0277 0.0005 25 1 -0.3634 -0.5137 -0.8900 26 1 -0.3633 -0.5139 0.8900 27 1 4.0828 2.1158 -0.0107 28 1 5.3036 -0.0080 -0.0006 29 1 4.0352 -2.1504 -0.0004 30 1 0.5550 -4.8877 0.6284 31 1 0.6820 -4.8127 -1.1455 32 1 -1.3502 -8.8209 0.1872 33 1 3.5190 -5.1382 1.3363 34 1 3.6696 -6.9714 1.2012 35 1 3.9910 -6.7603 -1.3066 36 1 3.8402 -4.9272 -1.1723 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001346751940.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:55 Heat of formation + Delta-G solvation = -54.854903 kcal Electronic energy + Delta-G solvation = -21546.777628 eV Core-core repulsion = 18190.947505 eV Total energy + Delta-G solvation = -3355.830123 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.79098 -41.39631 -39.07078 -38.01108 -37.22342 -35.51510 -34.42059 -31.90840 -29.54252 -28.77530 -27.49733 -25.95923 -23.78440 -23.05858 -22.79879 -21.11548 -19.50051 -19.03940 -18.44595 -18.25612 -17.99741 -17.61846 -17.07898 -16.58355 -16.50254 -15.63406 -15.60896 -15.27641 -14.74473 -14.63525 -14.29698 -13.94828 -13.70083 -13.46818 -13.23396 -13.09604 -12.94224 -12.75583 -12.45103 -12.04083 -11.90165 -11.67000 -11.48336 -11.24177 -11.18927 -11.16445 -10.65801 -10.28685 -9.27173 -8.45033 -6.41795 -0.86191 0.49233 0.83889 1.21126 1.25440 1.27615 1.32687 1.69760 2.16889 2.47935 2.75606 3.12039 3.38770 3.47267 3.80562 3.88631 3.98243 4.04701 4.15622 4.19614 4.24642 4.38741 4.45140 4.60377 4.75727 4.77457 4.93279 4.96364 5.01400 5.13425 5.15480 5.31510 5.34950 5.57447 5.60810 5.78231 6.18163 6.32796 6.59611 6.75333 7.17336 8.71262 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.027602 B = 0.005165 C = 0.004521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.190685 B = 5419.772323 C = 6191.242750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.485 5.485 3 C 0.499 3.501 4 O -0.593 6.593 5 C -0.207 4.207 6 C -0.011 4.011 7 C -0.111 4.111 8 C 0.092 3.908 9 C 0.500 3.500 10 O -0.521 6.521 11 O -0.323 6.323 12 C 0.099 3.901 13 C -0.038 4.038 14 C -0.484 4.484 15 H 0.052 0.948 16 C 0.031 3.969 17 N -0.931 5.931 18 Si 0.925 3.075 19 H -0.277 1.277 20 H -0.291 1.291 21 H -0.242 1.242 22 C -0.182 4.182 23 C -0.151 4.151 24 H 0.095 0.905 25 H 0.080 0.920 26 H 0.082 0.918 27 H 0.179 0.821 28 H 0.199 0.801 29 H 0.188 0.812 30 H 0.053 0.947 31 H 0.069 0.931 32 H 0.270 0.730 33 H 0.098 0.902 34 H 0.079 0.921 35 H 0.081 0.919 36 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.643 17.160 1.406 20.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.199 5.199 3 C 0.303 3.697 4 O -0.479 6.479 5 C -0.228 4.228 6 C -0.032 4.032 7 C -0.135 4.135 8 C -0.014 4.014 9 C 0.344 3.656 10 O -0.412 6.412 11 O -0.238 6.238 12 C 0.026 3.974 13 C -0.039 4.039 14 C -0.521 4.521 15 H 0.070 0.930 16 C -0.169 4.169 17 N -0.569 5.569 18 Si 0.754 3.246 19 H -0.204 1.204 20 H -0.218 1.218 21 H -0.166 1.166 22 C -0.220 4.220 23 C -0.188 4.188 24 H 0.113 0.887 25 H 0.098 0.902 26 H 0.100 0.900 27 H 0.196 0.804 28 H 0.216 0.784 29 H 0.205 0.795 30 H 0.070 0.930 31 H 0.087 0.913 32 H 0.080 0.920 33 H 0.117 0.883 34 H 0.098 0.902 35 H 0.099 0.901 36 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 10.658 17.625 1.458 20.648 hybrid contribution -1.509 -0.258 0.444 1.594 sum 9.149 17.367 1.903 19.721 Atomic orbital electron populations 1.22254 0.76656 1.04471 1.04437 1.45419 1.09922 1.05275 1.59251 1.17988 0.90789 0.81635 0.79313 1.90915 1.70908 1.30158 1.55917 1.22729 0.90490 1.02591 1.07036 1.21987 1.03529 0.89160 0.88489 1.21763 0.89506 1.02928 0.99285 1.18933 0.92794 0.82738 1.06940 1.21134 0.85804 0.85230 0.73405 1.90888 1.16129 1.88228 1.45921 1.86448 1.40710 1.14224 1.82381 1.23248 0.93215 0.79929 1.01018 1.19247 0.88360 0.90553 1.05714 1.20482 1.02002 0.96848 1.32815 0.92965 1.25648 0.96922 0.96862 0.97470 1.69992 1.12946 1.30254 1.43711 0.86301 0.79088 0.78687 0.80565 1.20371 1.21819 1.16640 1.23123 1.03928 1.01965 0.92952 1.22858 0.97753 1.02552 0.95675 0.88655 0.90167 0.89956 0.80404 0.78358 0.79521 0.92978 0.91264 0.92011 0.88340 0.90192 0.90080 0.86888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.68 8.94 127.77 1.14 2.82 16 2 N -0.48 -12.55 3.02 -660.61 -1.99 -14.54 16 3 C 0.50 12.80 7.43 85.01 0.63 13.43 16 4 O -0.59 -19.52 16.39 -5.19 -0.09 -19.61 16 5 C -0.21 -3.25 10.00 22.52 0.23 -3.03 16 6 C -0.01 -0.11 10.08 22.30 0.22 0.12 16 7 C -0.11 -1.66 9.57 22.36 0.21 -1.44 16 8 C 0.09 2.16 6.63 40.42 0.27 2.43 16 9 C 0.50 15.23 7.83 70.34 0.55 15.79 16 10 O -0.52 -18.92 12.90 19.98 0.26 -18.66 16 11 O -0.32 -10.22 7.66 -56.64 -0.43 -10.65 16 12 C 0.10 3.98 4.32 71.98 0.31 4.29 16 13 C -0.04 -1.61 1.81 -52.93 -0.10 -1.71 16 14 C -0.48 -25.96 9.57 25.60 0.25 -25.72 16 15 H 0.05 3.08 8.06 -2.91 -0.02 3.06 16 16 C 0.03 1.71 5.43 84.66 0.46 2.17 16 17 N -0.93 -55.69 13.96 21.45 0.30 -55.39 16 18 Si 0.93 43.83 24.23 68.60 1.66 45.49 16 19 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 20 H -0.29 -13.69 7.11 99.48 0.71 -12.99 16 21 H -0.24 -10.60 6.38 99.48 0.63 -9.96 16 22 C -0.18 -6.48 9.66 30.62 0.30 -6.18 16 23 C -0.15 -5.14 9.63 30.62 0.29 -4.84 16 24 H 0.09 2.50 6.86 -2.39 -0.02 2.48 16 25 H 0.08 2.16 7.36 -2.39 -0.02 2.14 16 26 H 0.08 2.26 7.09 -2.38 -0.02 2.24 16 27 H 0.18 1.98 8.06 -2.91 -0.02 1.95 16 28 H 0.20 0.08 8.06 -2.91 -0.02 0.06 16 29 H 0.19 2.04 7.52 -2.91 -0.02 2.02 16 30 H 0.05 2.30 2.37 -2.39 -0.01 2.29 16 31 H 0.07 2.91 8.14 -2.38 -0.02 2.89 16 32 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 33 H 0.10 3.01 7.79 -2.39 -0.02 2.99 16 34 H 0.08 2.95 8.14 -2.39 -0.02 2.93 16 35 H 0.08 2.81 8.14 -2.39 -0.02 2.79 16 36 H 0.11 3.10 7.53 -2.39 -0.02 3.08 16 Total: -1.00 -70.82 303.08 5.51 -65.31 By element: Atomic # 1 Polarization: 8.88 SS G_CDS: 1.03 Total: 9.92 kcal Atomic # 6 Polarization: -6.64 SS G_CDS: 4.77 Total: -1.87 kcal Atomic # 7 Polarization: -68.24 SS G_CDS: -1.69 Total: -69.93 kcal Atomic # 8 Polarization: -48.66 SS G_CDS: -0.26 Total: -48.92 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 1.66 Total: 45.49 kcal Total: -70.82 5.51 -65.31 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346751940.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.456 kcal (2) G-P(sol) polarization free energy of solvation -70.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds