Wall clock time and date at job start Mon Mar 30 2020 01:36:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50699 * 109.47078 * 119.99793 * 2 1 3 5 5 H 1.08003 * 120.00271 * 120.00264 * 4 2 1 6 6 C 1.37879 * 120.00161 * 299.99763 * 4 2 1 7 7 N 1.31509 * 119.99895 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 120.00268 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.46680 * 60.00301 * 8 6 4 10 10 H 1.48492 * 109.47298 * 180.02562 * 8 6 4 11 11 H 1.48506 * 109.46944 * 300.00817 * 8 6 4 12 12 C 1.50697 * 109.47466 * 239.99773 * 2 1 3 13 13 O 1.20822 * 120.00115 * 240.00066 * 12 2 1 14 14 O 1.34234 * 119.99749 * 59.99914 * 12 2 1 15 15 C 1.45203 * 117.00028 * 179.97438 * 14 12 2 16 16 H 1.09005 * 109.47125 * 330.00445 * 15 14 12 17 17 C 1.50702 * 109.46928 * 90.00063 * 15 14 12 18 18 N 1.34773 * 120.00147 * 184.99989 * 17 15 14 19 19 O 1.21281 * 120.00014 * 4.99963 * 17 15 14 20 20 C 1.50690 * 109.47360 * 210.00161 * 15 14 12 21 21 C 1.38239 * 119.99732 * 324.72792 * 20 15 14 22 22 C 1.38240 * 119.99829 * 179.80801 * 21 20 15 23 23 C 1.38238 * 119.99817 * 0.40315 * 22 21 20 24 24 C 1.38230 * 120.00108 * 359.84750 * 23 22 21 25 25 C 1.38233 * 120.00242 * 145.00007 * 20 15 14 26 26 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 28 28 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 29 29 H 0.97006 * 120.00358 * 179.97438 * 7 6 4 30 30 H 0.97002 * 119.99711 * 0.02562 * 18 17 15 31 31 H 0.96993 * 120.00523 * 179.97438 * 18 17 15 32 32 H 1.07991 * 120.00563 * 359.97438 * 21 20 15 33 33 H 1.07998 * 120.00384 * 180.22726 * 22 21 20 34 34 H 1.08000 * 120.00208 * 179.83368 * 23 22 21 35 35 H 1.08000 * 120.00177 * 179.97438 * 24 23 22 36 36 H 1.08004 * 120.00022 * 359.97438 * 25 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1315 6 6 1.6993 -0.2393 2.4828 7 7 0.9428 0.8297 2.6034 8 14 2.3213 -1.1202 4.0081 9 1 3.8063 -1.1207 4.0082 10 1 1.8260 -0.4204 5.2205 11 1 1.8258 -2.5201 4.0078 12 6 2.0324 -0.7104 -1.2304 13 8 2.7270 -1.6928 -1.1195 14 8 1.7081 -0.2518 -2.4496 15 6 2.2278 -0.9857 -3.5896 16 1 3.1808 -1.4430 -3.3236 17 6 1.2478 -2.0604 -3.9843 18 7 1.5644 -2.9363 -4.9584 19 8 0.1742 -2.1371 -3.4253 20 6 2.4295 -0.0406 -4.7459 21 6 1.5517 1.0093 -4.9416 22 6 1.7390 1.8786 -6.0000 23 6 2.7992 1.6931 -6.8674 24 6 3.6739 0.6403 -6.6747 25 6 3.4889 -0.2268 -5.6141 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 0.5139 0.8900 29 1 0.7082 1.1610 3.4844 30 1 2.4232 -2.8752 -5.4052 31 1 0.9338 -3.6283 -5.2122 32 1 0.7213 1.1519 -4.2662 33 1 1.0554 2.7010 -6.1508 34 1 2.9440 2.3707 -7.6959 35 1 4.5020 0.4951 -7.3527 36 1 4.1724 -1.0494 -5.4635 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001346787095.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:37 Heat of formation + Delta-G solvation = -127.132791 kcal Electronic energy + Delta-G solvation = -21392.432055 eV Core-core repulsion = 18033.467728 eV Total energy + Delta-G solvation = -3358.964328 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.03614 -40.45365 -39.72468 -37.45382 -35.97076 -35.05202 -33.20173 -32.46858 -31.83240 -28.48923 -27.31687 -25.16431 -23.58311 -23.27977 -22.06896 -21.19075 -19.02761 -18.79642 -18.33883 -18.24530 -17.60887 -17.11054 -16.54179 -16.51212 -15.97463 -15.60598 -15.48457 -15.04585 -14.72368 -14.36361 -14.27544 -13.72754 -13.60540 -13.25655 -13.00749 -12.83969 -12.65791 -12.61593 -12.32403 -12.18357 -12.05640 -11.94789 -11.22984 -11.17112 -11.09172 -10.85673 -10.55738 -9.86540 -9.77252 -8.21310 -6.35420 0.22449 0.46170 1.28624 1.33716 1.41520 1.44354 1.51457 1.67248 2.36675 2.44789 2.88864 3.08450 3.39252 3.75363 3.81181 4.01985 4.14790 4.21215 4.29548 4.58112 4.62528 4.67002 4.84981 4.92047 4.96040 5.12418 5.22791 5.38178 5.48997 5.58319 5.59325 5.64757 5.72725 5.81997 6.03996 6.04831 6.19929 6.69624 6.91492 7.13042 7.32930 8.85429 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.025232 B = 0.004578 C = 0.004338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.451505 B = 6115.088624 C = 6453.283304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.054 3.946 3 H 0.054 0.946 4 C -0.541 4.541 5 H 0.058 0.942 6 C 0.022 3.978 7 N -0.909 5.909 8 Si 0.967 3.033 9 H -0.270 1.270 10 H -0.272 1.272 11 H -0.276 1.276 12 C 0.475 3.525 13 O -0.537 6.537 14 O -0.335 6.335 15 C 0.102 3.898 16 H 0.119 0.881 17 C 0.508 3.492 18 N -0.819 5.819 19 O -0.574 6.574 20 C -0.108 4.108 21 C -0.111 4.111 22 C -0.126 4.126 23 C -0.108 4.108 24 C -0.114 4.114 25 C -0.105 4.105 26 H 0.020 0.980 27 H 0.041 0.959 28 H 0.081 0.919 29 H 0.269 0.731 30 H 0.419 0.581 31 H 0.415 0.585 32 H 0.106 0.894 33 H 0.141 0.859 34 H 0.155 0.845 35 H 0.162 0.838 36 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.558 -0.097 -22.025 22.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.035 3.965 3 H 0.072 0.928 4 C -0.579 4.579 5 H 0.076 0.924 6 C -0.178 4.178 7 N -0.547 5.547 8 Si 0.792 3.208 9 H -0.195 1.195 10 H -0.197 1.197 11 H -0.201 1.201 12 C 0.321 3.679 13 O -0.426 6.426 14 O -0.251 6.251 15 C 0.043 3.957 16 H 0.136 0.864 17 C 0.292 3.708 18 N -0.385 5.385 19 O -0.453 6.453 20 C -0.108 4.108 21 C -0.129 4.129 22 C -0.144 4.144 23 C -0.126 4.126 24 C -0.132 4.132 25 C -0.123 4.123 26 H 0.039 0.961 27 H 0.060 0.940 28 H 0.100 0.900 29 H 0.079 0.921 30 H 0.251 0.749 31 H 0.248 0.752 32 H 0.124 0.876 33 H 0.158 0.842 34 H 0.173 0.827 35 H 0.180 0.820 36 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 5.054 -0.169 -21.426 22.014 hybrid contribution 0.114 -0.798 0.869 1.186 sum 5.168 -0.967 -20.556 21.218 Atomic orbital electron populations 1.21514 0.94768 0.99405 1.01662 1.18679 0.95508 0.96328 0.86004 0.92787 1.21200 1.32927 1.13394 0.90337 0.92419 1.25686 0.94800 0.95652 1.01654 1.69957 1.36429 1.23406 1.24915 0.85474 0.78875 0.78501 0.77992 1.19498 1.19677 1.20098 1.24991 0.75532 0.82690 0.84675 1.90438 1.37708 1.27475 1.87004 1.86709 1.70037 1.53883 1.14477 1.21371 0.97491 0.91770 0.85072 0.86372 1.20838 0.87265 0.82822 0.79918 1.43390 1.23654 1.33290 1.38206 1.90774 1.25816 1.73875 1.54797 1.19271 0.98981 0.97328 0.95230 1.21135 0.98819 0.94963 0.98014 1.21430 0.99323 0.99228 0.94394 1.21659 0.93698 0.98029 0.99181 1.21513 1.00077 0.94149 0.97419 1.21244 0.95567 1.01058 0.94462 0.96106 0.94024 0.89989 0.92146 0.74917 0.75238 0.87581 0.84155 0.82726 0.82032 0.83032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.10 8.90 71.98 0.64 -5.46 16 2 C 0.05 2.96 2.74 -12.29 -0.03 2.93 16 3 H 0.05 3.04 8.14 -2.39 -0.02 3.02 16 4 C -0.54 -32.08 8.37 25.60 0.21 -31.87 16 5 H 0.06 3.55 6.76 -2.91 -0.02 3.53 16 6 C 0.02 1.26 5.30 84.66 0.45 1.70 16 7 N -0.91 -52.10 11.32 21.45 0.24 -51.86 16 8 Si 0.97 45.00 29.54 68.60 2.03 47.02 16 9 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 10 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 11 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 12 C 0.48 24.27 7.22 71.23 0.51 24.79 16 13 O -0.54 -28.81 14.68 21.98 0.32 -28.48 16 14 O -0.34 -14.68 8.48 -45.11 -0.38 -15.06 16 15 C 0.10 3.43 2.56 29.10 0.07 3.50 16 16 H 0.12 3.79 7.07 -2.38 -0.02 3.78 16 17 C 0.51 17.16 7.41 87.66 0.65 17.81 16 18 N -0.82 -16.82 8.83 -173.53 -1.53 -18.35 16 19 O -0.57 -25.60 17.35 15.71 0.27 -25.32 16 20 C -0.11 -2.82 4.95 -19.87 -0.10 -2.91 16 21 C -0.11 -3.02 9.35 22.27 0.21 -2.82 16 22 C -0.13 -2.51 10.05 22.27 0.22 -2.29 16 23 C -0.11 -1.57 10.05 22.27 0.22 -1.35 16 24 C -0.11 -1.53 10.05 22.27 0.22 -1.31 16 25 C -0.11 -1.85 9.52 22.27 0.21 -1.63 16 26 H 0.02 1.09 8.14 -2.39 -0.02 1.07 16 27 H 0.04 1.98 8.11 -2.39 -0.02 1.96 16 28 H 0.08 4.52 6.07 -2.38 -0.01 4.51 16 29 H 0.27 14.49 8.31 -92.70 -0.77 13.72 16 30 H 0.42 5.32 8.66 -92.71 -0.80 4.52 16 31 H 0.41 7.17 8.93 -92.71 -0.83 6.34 16 32 H 0.11 3.39 7.63 -2.92 -0.02 3.37 16 33 H 0.14 2.25 8.06 -2.91 -0.02 2.23 16 34 H 0.16 1.27 8.06 -2.91 -0.02 1.25 16 35 H 0.16 1.04 8.06 -2.91 -0.02 1.02 16 36 H 0.15 1.76 8.06 -2.91 -0.02 1.73 16 Total: -1.00 -77.71 318.04 3.94 -73.76 By element: Atomic # 1 Polarization: 17.71 SS G_CDS: -0.51 Total: 17.20 kcal Atomic # 6 Polarization: -2.41 SS G_CDS: 3.50 Total: 1.10 kcal Atomic # 7 Polarization: -68.92 SS G_CDS: -1.29 Total: -70.21 kcal Atomic # 8 Polarization: -69.08 SS G_CDS: 0.21 Total: -68.87 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.02 kcal Total: -77.71 3.94 -73.76 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346787095.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.371 kcal (2) G-P(sol) polarization free energy of solvation -77.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds