Wall clock time and date at job start Mon Mar 30 2020 01:36:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47208 * 2 1 4 4 C 1.50701 * 109.47076 * 240.00006 * 2 1 3 5 5 H 1.08000 * 120.00070 * 275.10862 * 4 2 1 6 6 C 1.37881 * 120.00256 * 95.10402 * 4 2 1 7 7 N 1.31511 * 120.00419 * 184.91307 * 6 4 2 8 8 Si 1.86804 * 119.99441 * 4.91056 * 6 4 2 9 9 H 1.48504 * 109.47158 * 84.82607 * 8 6 4 10 10 H 1.48506 * 109.46943 * 204.82255 * 8 6 4 11 11 H 1.48497 * 109.47193 * 324.82283 * 8 6 4 12 12 C 1.50702 * 109.46969 * 120.00385 * 2 1 3 13 13 O 1.20821 * 119.99989 * 119.99957 * 12 2 1 14 14 O 1.34229 * 119.99392 * 299.99828 * 12 2 1 15 15 C 1.45206 * 116.99424 * 180.02562 * 14 12 2 16 16 H 1.08997 * 109.47565 * 29.99784 * 15 14 12 17 17 C 1.50702 * 109.46868 * 269.99619 * 15 14 12 18 18 N 1.34773 * 119.99749 * 175.00011 * 17 15 14 19 19 O 1.21279 * 119.99923 * 355.00145 * 17 15 14 20 20 C 1.50700 * 109.46914 * 150.00158 * 15 14 12 21 21 C 1.38241 * 119.99945 * 219.99852 * 20 15 14 22 22 C 1.38230 * 120.00149 * 179.97438 * 21 20 15 23 23 C 1.38232 * 119.99955 * 359.97438 * 22 21 20 24 24 C 1.38231 * 120.00099 * 0.02562 * 23 22 21 25 25 C 1.38231 * 120.00053 * 0.06699 * 24 23 22 26 26 H 1.09002 * 109.47003 * 55.06112 * 1 2 3 27 27 H 1.08996 * 109.47266 * 175.05544 * 1 2 3 28 28 H 1.08996 * 109.47443 * 295.06237 * 1 2 3 29 29 H 0.96996 * 120.00292 * 179.97438 * 7 6 4 30 30 H 0.97006 * 120.00188 * 0.02562 * 18 17 15 31 31 H 0.97002 * 120.00173 * 179.97438 * 18 17 15 32 32 H 1.08000 * 119.99348 * 359.97438 * 21 20 15 33 33 H 1.08006 * 119.99695 * 180.02562 * 22 21 20 34 34 H 1.08004 * 119.99686 * 179.72266 * 23 22 21 35 35 H 1.08000 * 120.00047 * 179.97438 * 24 23 22 36 36 H 1.08000 * 120.00267 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.1338 -1.7856 -1.2296 6 6 2.3623 0.0123 -2.3574 7 7 2.7080 -0.6128 -3.4616 8 14 2.3182 1.8793 -2.3156 9 1 3.6039 2.3930 -1.7787 10 1 2.1126 2.4005 -3.6910 11 1 1.2029 2.3287 -1.4441 12 6 2.0323 -0.7105 1.2304 13 8 2.7269 -1.6928 1.1195 14 8 1.7080 -0.2519 2.4495 15 6 2.2276 -0.9858 3.5896 16 1 3.1806 -1.4432 3.3237 17 6 1.2475 -2.0604 3.9842 18 7 1.5640 -2.9364 4.9583 19 8 0.1739 -2.1369 3.4252 20 6 2.4292 -0.0407 4.7459 21 6 3.5449 -0.1639 5.5529 22 6 3.7301 0.7034 6.6132 23 6 2.8001 1.6942 6.8664 24 6 1.6845 1.8174 6.0595 25 6 1.4982 0.9489 5.0003 26 1 -0.3633 0.5886 -0.8425 27 1 -0.3633 -1.0238 -0.0886 28 1 -0.3634 0.4353 0.9309 29 1 2.9398 -0.1044 -4.2545 30 1 2.4226 -2.8750 5.4057 31 1 0.9330 -3.6279 5.2126 32 1 4.2717 -0.9378 5.3548 33 1 4.6020 0.6073 7.2434 34 1 2.9426 2.3689 7.6975 35 1 0.9576 2.5912 6.2575 36 1 0.6264 1.0449 4.3701 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001346787096.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:39 Heat of formation + Delta-G solvation = -102.567923 kcal Electronic energy + Delta-G solvation = -21448.330166 eV Core-core repulsion = 18090.431051 eV Total energy + Delta-G solvation = -3357.899115 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.60341 -39.09572 -38.61763 -35.77179 -33.89500 -33.75973 -32.09126 -31.25671 -31.06789 -27.38793 -25.25964 -23.38969 -22.69536 -22.30651 -20.55785 -19.55079 -17.73887 -17.53820 -17.16655 -16.80333 -16.20547 -15.86650 -15.12175 -14.84418 -14.73630 -14.45211 -14.03547 -13.68429 -13.51253 -13.12307 -12.83154 -12.54275 -12.29015 -12.02826 -11.43210 -11.34528 -11.13926 -11.09677 -10.90336 -10.74601 -10.34104 -9.87034 -9.83363 -9.73281 -9.30384 -9.19760 -9.09768 -8.89454 -8.63124 -6.13885 -4.15230 1.04836 1.23112 2.59350 2.93892 3.16357 3.28480 3.32396 3.34245 3.48278 3.86585 4.33824 4.46018 4.69871 4.78957 4.90861 4.96344 5.12879 5.17850 5.31113 5.42471 5.70989 5.80934 5.91243 6.21749 6.22627 6.33450 6.38266 6.52831 6.57012 6.70960 6.78092 6.83656 7.06267 7.21704 7.26447 7.50237 8.20531 8.39346 8.73669 8.99604 9.43571 10.98512 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.020879 B = 0.005268 C = 0.004720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.709173 B = 5314.263816 C = 5931.330744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.028 3.972 3 H 0.065 0.935 4 C -0.505 4.505 5 H 0.088 0.912 6 C 0.077 3.923 7 N -0.888 5.888 8 Si 0.868 3.132 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.260 1.260 12 C 0.467 3.533 13 O -0.500 6.500 14 O -0.335 6.335 15 C 0.106 3.894 16 H 0.114 0.886 17 C 0.513 3.487 18 N -0.850 5.850 19 O -0.517 6.517 20 C -0.087 4.087 21 C -0.107 4.107 22 C -0.121 4.121 23 C -0.114 4.114 24 C -0.121 4.121 25 C -0.083 4.083 26 H 0.057 0.943 27 H 0.053 0.947 28 H 0.039 0.961 29 H 0.267 0.733 30 H 0.400 0.600 31 H 0.403 0.597 32 H 0.126 0.874 33 H 0.125 0.875 34 H 0.122 0.878 35 H 0.125 0.875 36 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.624 3.374 22.439 22.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.009 3.991 3 H 0.083 0.917 4 C -0.542 4.542 5 H 0.106 0.894 6 C -0.126 4.126 7 N -0.525 5.525 8 Si 0.695 3.305 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.185 1.185 12 C 0.310 3.690 13 O -0.385 6.385 14 O -0.252 6.252 15 C 0.047 3.953 16 H 0.132 0.868 17 C 0.296 3.704 18 N -0.416 5.416 19 O -0.391 6.391 20 C -0.088 4.088 21 C -0.125 4.125 22 C -0.139 4.139 23 C -0.132 4.132 24 C -0.139 4.139 25 C -0.101 4.101 26 H 0.076 0.924 27 H 0.072 0.928 28 H 0.058 0.942 29 H 0.077 0.923 30 H 0.228 0.772 31 H 0.234 0.766 32 H 0.144 0.856 33 H 0.143 0.857 34 H 0.140 0.860 35 H 0.143 0.857 36 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 0.247 3.194 21.697 21.932 hybrid contribution 0.416 0.537 0.254 0.725 sum 0.663 3.731 21.950 22.275 Atomic orbital electron populations 1.21899 0.95431 1.01774 0.99960 1.19197 0.95042 0.96895 0.87994 0.91704 1.20755 1.44052 0.96253 0.93150 0.89413 1.24984 0.94144 0.98282 0.95199 1.69867 1.45024 1.35941 1.01666 0.86988 0.79400 0.86306 0.77845 1.19844 1.20910 1.18463 1.25409 0.76556 0.83632 0.83394 1.90524 1.35718 1.26122 1.86140 1.86795 1.70343 1.53741 1.14365 1.21014 0.97879 0.90876 0.85573 0.86807 1.20698 0.88008 0.82293 0.79383 1.43690 1.22725 1.34915 1.40267 1.90788 1.23604 1.72335 1.52369 1.19364 0.96307 0.97634 0.95458 1.20986 0.96288 0.99876 0.95334 1.21068 0.99482 0.95631 0.97766 1.21225 0.94453 0.98121 0.99423 1.21203 0.98041 0.99307 0.95349 1.21164 0.98967 0.93565 0.96416 0.92407 0.92770 0.94210 0.92277 0.77202 0.76565 0.85564 0.85671 0.85955 0.85684 0.84918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.96 9.14 37.16 0.34 -2.62 16 2 C 0.03 0.70 2.40 -92.92 -0.22 0.48 16 3 H 0.07 1.54 5.29 -51.93 -0.27 1.27 16 4 C -0.50 -14.68 8.36 -34.44 -0.29 -14.96 16 5 H 0.09 2.87 7.62 -52.49 -0.40 2.47 16 6 C 0.08 2.22 5.47 -17.82 -0.10 2.12 16 7 N -0.89 -27.16 13.96 55.43 0.77 -26.38 16 8 Si 0.87 20.91 26.99 -169.99 -4.59 16.32 16 9 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 10 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 11 H -0.26 -5.86 6.82 56.52 0.39 -5.47 16 12 C 0.47 11.12 7.22 36.01 0.26 11.38 16 13 O -0.50 -13.01 14.99 -18.75 -0.28 -13.30 16 14 O -0.34 -6.75 8.56 -45.88 -0.39 -7.15 16 15 C 0.11 1.71 2.56 -29.03 -0.07 1.64 16 16 H 0.11 1.79 7.02 -51.93 -0.36 1.43 16 17 C 0.51 8.28 7.40 -10.99 -0.08 8.20 16 18 N -0.85 -9.00 8.83 31.22 0.28 -8.72 16 19 O -0.52 -10.67 17.35 -14.05 -0.24 -10.91 16 20 C -0.09 -1.13 4.93 -104.62 -0.52 -1.64 16 21 C -0.11 -1.07 9.67 -39.58 -0.38 -1.45 16 22 C -0.12 -1.05 10.05 -39.59 -0.40 -1.45 16 23 C -0.11 -1.01 10.05 -39.59 -0.40 -1.40 16 24 C -0.12 -1.23 10.05 -39.59 -0.40 -1.63 16 25 C -0.08 -1.06 9.35 -39.59 -0.37 -1.43 16 26 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 27 H 0.05 1.24 8.14 -51.93 -0.42 0.81 16 28 H 0.04 0.79 8.00 -51.93 -0.42 0.37 16 29 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 30 H 0.40 2.95 8.83 -40.82 -0.36 2.59 16 31 H 0.40 3.64 8.93 -40.82 -0.36 3.28 16 32 H 0.13 0.98 8.04 -52.49 -0.42 0.56 16 33 H 0.13 0.77 8.06 -52.48 -0.42 0.34 16 34 H 0.12 0.78 8.06 -52.48 -0.42 0.35 16 35 H 0.13 1.02 8.06 -52.49 -0.42 0.59 16 36 H 0.13 1.82 7.78 -52.49 -0.41 1.41 16 LS Contribution 318.59 15.07 4.80 4.80 Total: -1.00 -35.89 318.59 -6.56 -42.44 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: -4.27 Total: 5.66 kcal Atomic # 6 Polarization: -0.14 SS G_CDS: -2.63 Total: -2.77 kcal Atomic # 7 Polarization: -36.16 SS G_CDS: 1.05 Total: -35.11 kcal Atomic # 8 Polarization: -30.43 SS G_CDS: -0.92 Total: -31.35 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -4.59 Total: 16.32 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -35.89 -6.56 -42.44 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346787096.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.126 kcal (2) G-P(sol) polarization free energy of solvation -35.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds