Wall clock time and date at job start Mon Mar 30 2020 01:36:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47208 * 2 1 4 4 C 1.50701 * 109.47076 * 240.00006 * 2 1 3 5 5 H 1.08000 * 120.00070 * 275.10862 * 4 2 1 6 6 C 1.37881 * 120.00256 * 95.10402 * 4 2 1 7 7 N 1.31511 * 120.00419 * 184.91307 * 6 4 2 8 8 Si 1.86804 * 119.99441 * 4.91056 * 6 4 2 9 9 H 1.48504 * 109.47158 * 84.82607 * 8 6 4 10 10 H 1.48506 * 109.46943 * 204.82255 * 8 6 4 11 11 H 1.48497 * 109.47193 * 324.82283 * 8 6 4 12 12 C 1.50702 * 109.46969 * 120.00385 * 2 1 3 13 13 O 1.20821 * 119.99989 * 119.99957 * 12 2 1 14 14 O 1.34229 * 119.99392 * 299.99828 * 12 2 1 15 15 C 1.45206 * 116.99424 * 180.02562 * 14 12 2 16 16 H 1.08997 * 109.47565 * 29.99784 * 15 14 12 17 17 C 1.50702 * 109.46868 * 269.99619 * 15 14 12 18 18 N 1.34773 * 119.99749 * 175.00011 * 17 15 14 19 19 O 1.21279 * 119.99923 * 355.00145 * 17 15 14 20 20 C 1.50700 * 109.46914 * 150.00158 * 15 14 12 21 21 C 1.38241 * 119.99945 * 219.99852 * 20 15 14 22 22 C 1.38230 * 120.00149 * 179.97438 * 21 20 15 23 23 C 1.38232 * 119.99955 * 359.97438 * 22 21 20 24 24 C 1.38231 * 120.00099 * 0.02562 * 23 22 21 25 25 C 1.38231 * 120.00053 * 0.06699 * 24 23 22 26 26 H 1.09002 * 109.47003 * 55.06112 * 1 2 3 27 27 H 1.08996 * 109.47266 * 175.05544 * 1 2 3 28 28 H 1.08996 * 109.47443 * 295.06237 * 1 2 3 29 29 H 0.96996 * 120.00292 * 179.97438 * 7 6 4 30 30 H 0.97006 * 120.00188 * 0.02562 * 18 17 15 31 31 H 0.97002 * 120.00173 * 179.97438 * 18 17 15 32 32 H 1.08000 * 119.99348 * 359.97438 * 21 20 15 33 33 H 1.08006 * 119.99695 * 180.02562 * 22 21 20 34 34 H 1.08004 * 119.99686 * 179.72266 * 23 22 21 35 35 H 1.08000 * 120.00047 * 179.97438 * 24 23 22 36 36 H 1.08000 * 120.00267 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.1338 -1.7856 -1.2296 6 6 2.3623 0.0123 -2.3574 7 7 2.7080 -0.6128 -3.4616 8 14 2.3182 1.8793 -2.3156 9 1 3.6039 2.3930 -1.7787 10 1 2.1126 2.4005 -3.6910 11 1 1.2029 2.3287 -1.4441 12 6 2.0323 -0.7105 1.2304 13 8 2.7269 -1.6928 1.1195 14 8 1.7080 -0.2519 2.4495 15 6 2.2276 -0.9858 3.5896 16 1 3.1806 -1.4432 3.3237 17 6 1.2475 -2.0604 3.9842 18 7 1.5640 -2.9364 4.9583 19 8 0.1739 -2.1369 3.4252 20 6 2.4292 -0.0407 4.7459 21 6 3.5449 -0.1639 5.5529 22 6 3.7301 0.7034 6.6132 23 6 2.8001 1.6942 6.8664 24 6 1.6845 1.8174 6.0595 25 6 1.4982 0.9489 5.0003 26 1 -0.3633 0.5886 -0.8425 27 1 -0.3633 -1.0238 -0.0886 28 1 -0.3634 0.4353 0.9309 29 1 2.9398 -0.1044 -4.2545 30 1 2.4226 -2.8750 5.4057 31 1 0.9330 -3.6279 5.2126 32 1 4.2717 -0.9378 5.3548 33 1 4.6020 0.6073 7.2434 34 1 2.9426 2.3689 7.6975 35 1 0.9576 2.5912 6.2575 36 1 0.6264 1.0449 4.3701 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001346787096.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:39 Heat of formation + Delta-G solvation = -128.192701 kcal Electronic energy + Delta-G solvation = -21449.441339 eV Core-core repulsion = 18090.431051 eV Total energy + Delta-G solvation = -3359.010289 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.04668 -40.46767 -39.72242 -37.45389 -35.85634 -35.03916 -33.58769 -32.85884 -31.83667 -28.52093 -27.34341 -25.16324 -23.57306 -23.27102 -21.94069 -21.14180 -19.37389 -18.97391 -18.51010 -18.29845 -17.66631 -17.08935 -16.53291 -16.42162 -16.01420 -15.59098 -15.48501 -15.11673 -14.63020 -14.39000 -14.28126 -14.19728 -13.65255 -13.38533 -13.13794 -13.01447 -12.68298 -12.63642 -12.28480 -12.17718 -11.94880 -11.80389 -11.38193 -11.23845 -11.07192 -10.85414 -10.80793 -9.86320 -9.78362 -8.34986 -6.44913 0.21646 0.46521 1.25573 1.32744 1.36237 1.36789 1.48731 1.64117 2.30822 2.39059 2.87678 3.01890 3.39367 3.73970 3.80896 3.98977 4.14989 4.16336 4.28117 4.29733 4.58427 4.61555 4.65472 4.77536 4.94299 4.99710 5.13089 5.24035 5.41766 5.43002 5.50020 5.58606 5.59517 5.72437 6.03940 6.16734 6.20189 6.62750 6.89194 7.12204 7.19030 8.81891 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.020879 B = 0.005268 C = 0.004720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.709173 B = 5314.263816 C = 5931.330744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.022 3.978 3 H 0.084 0.916 4 C -0.519 4.519 5 H 0.029 0.971 6 C 0.019 3.981 7 N -0.939 5.939 8 Si 0.940 3.060 9 H -0.262 1.262 10 H -0.276 1.276 11 H -0.229 1.229 12 C 0.470 3.530 13 O -0.535 6.535 14 O -0.332 6.332 15 C 0.102 3.898 16 H 0.115 0.885 17 C 0.508 3.492 18 N -0.820 5.820 19 O -0.573 6.573 20 C -0.107 4.107 21 C -0.106 4.106 22 C -0.116 4.116 23 C -0.107 4.107 24 C -0.125 4.125 25 C -0.107 4.107 26 H 0.069 0.931 27 H 0.035 0.965 28 H 0.065 0.935 29 H 0.272 0.728 30 H 0.419 0.581 31 H 0.414 0.586 32 H 0.148 0.852 33 H 0.159 0.841 34 H 0.154 0.846 35 H 0.143 0.857 36 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.376 5.958 25.661 26.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.003 3.997 3 H 0.102 0.898 4 C -0.557 4.557 5 H 0.047 0.953 6 C -0.179 4.179 7 N -0.578 5.578 8 Si 0.761 3.239 9 H -0.187 1.187 10 H -0.202 1.202 11 H -0.152 1.152 12 C 0.315 3.685 13 O -0.423 6.423 14 O -0.249 6.249 15 C 0.043 3.957 16 H 0.133 0.867 17 C 0.292 3.708 18 N -0.386 5.386 19 O -0.451 6.451 20 C -0.108 4.108 21 C -0.124 4.124 22 C -0.133 4.133 23 C -0.125 4.125 24 C -0.143 4.143 25 C -0.126 4.126 26 H 0.088 0.912 27 H 0.054 0.946 28 H 0.084 0.916 29 H 0.081 0.919 30 H 0.250 0.750 31 H 0.247 0.753 32 H 0.165 0.835 33 H 0.177 0.823 34 H 0.172 0.828 35 H 0.161 0.839 36 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 1.013 5.758 25.004 25.678 hybrid contribution 0.241 -0.372 -0.563 0.716 sum 1.255 5.386 24.441 25.059 Atomic orbital electron populations 1.21794 0.93485 1.01183 1.01813 1.19152 0.96468 0.97201 0.86897 0.89826 1.20757 1.45112 0.93976 0.95823 0.95264 1.25970 0.93177 1.04616 0.94150 1.70027 1.46394 1.38630 1.02714 0.85857 0.80874 0.78352 0.78861 1.18683 1.20163 1.15185 1.25033 0.75890 0.82947 0.84623 1.90500 1.37299 1.27498 1.86971 1.86696 1.70040 1.53859 1.14257 1.21372 0.97460 0.91803 0.85085 0.86704 1.20827 0.87289 0.82824 0.79881 1.43410 1.23648 1.33344 1.38237 1.90761 1.25757 1.73903 1.54725 1.19237 0.98240 0.98003 0.95313 1.21251 0.95363 1.00697 0.95058 1.21492 1.00255 0.94465 0.97108 1.21657 0.93318 0.98113 0.99419 1.21431 0.99162 0.99062 0.94611 1.21141 0.98724 0.94976 0.97710 0.91206 0.94599 0.91624 0.91860 0.74957 0.75252 0.83453 0.82344 0.82806 0.83941 0.87103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.55 9.14 71.98 0.66 -4.89 16 2 C 0.02 1.12 2.40 -12.28 -0.03 1.09 16 3 H 0.08 3.84 5.29 -2.39 -0.01 3.83 16 4 C -0.52 -31.47 8.36 25.60 0.21 -31.26 16 5 H 0.03 2.05 7.62 -2.91 -0.02 2.03 16 6 C 0.02 1.14 5.47 84.66 0.46 1.60 16 7 N -0.94 -59.44 13.96 21.45 0.30 -59.14 16 8 Si 0.94 42.50 26.99 68.60 1.85 44.35 16 9 H -0.26 -11.38 7.11 99.48 0.71 -10.68 16 10 H -0.28 -12.14 7.11 99.48 0.71 -11.44 16 11 H -0.23 -9.18 6.82 99.48 0.68 -8.50 16 12 C 0.47 23.02 7.22 71.24 0.51 23.53 16 13 O -0.53 -29.12 14.99 21.98 0.33 -28.79 16 14 O -0.33 -13.57 8.56 -45.06 -0.39 -13.95 16 15 C 0.10 3.28 2.56 29.10 0.07 3.35 16 16 H 0.12 3.64 7.02 -2.39 -0.02 3.62 16 17 C 0.51 16.54 7.40 87.66 0.65 17.19 16 18 N -0.82 -16.45 8.83 -173.54 -1.53 -17.99 16 19 O -0.57 -24.40 17.35 15.72 0.27 -24.13 16 20 C -0.11 -2.64 4.93 -19.86 -0.10 -2.73 16 21 C -0.11 -1.80 9.67 22.27 0.22 -1.58 16 22 C -0.12 -1.48 10.05 22.27 0.22 -1.26 16 23 C -0.11 -1.43 10.05 22.27 0.22 -1.20 16 24 C -0.12 -2.21 10.05 22.27 0.22 -1.99 16 25 C -0.11 -2.63 9.35 22.27 0.21 -2.42 16 26 H 0.07 2.89 8.14 -2.39 -0.02 2.87 16 27 H 0.03 1.68 8.14 -2.39 -0.02 1.66 16 28 H 0.06 2.55 8.00 -2.39 -0.02 2.53 16 29 H 0.27 15.84 8.31 -92.71 -0.77 15.07 16 30 H 0.42 5.28 8.83 -92.70 -0.82 4.47 16 31 H 0.41 6.99 8.93 -92.71 -0.83 6.16 16 32 H 0.15 1.79 8.04 -2.91 -0.02 1.77 16 33 H 0.16 1.02 8.06 -2.91 -0.02 1.00 16 34 H 0.15 1.10 8.06 -2.91 -0.02 1.08 16 35 H 0.14 1.93 8.06 -2.91 -0.02 1.90 16 36 H 0.11 3.11 7.78 -2.91 -0.02 3.09 16 Total: -1.00 -83.60 318.59 3.82 -79.77 By element: Atomic # 1 Polarization: 21.00 SS G_CDS: -0.55 Total: 20.45 kcal Atomic # 6 Polarization: -4.12 SS G_CDS: 3.54 Total: -0.58 kcal Atomic # 7 Polarization: -75.89 SS G_CDS: -1.23 Total: -77.13 kcal Atomic # 8 Polarization: -67.09 SS G_CDS: 0.22 Total: -66.87 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 1.85 Total: 44.35 kcal Total: -83.60 3.82 -79.77 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346787096.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.421 kcal (2) G-P(sol) polarization free energy of solvation -83.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds