Wall clock time and date at job start Mon Mar 30 2020 01:59:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.35418 * 119.46845 * 2 1 4 4 C 1.35787 * 121.24621 * 180.02562 * 3 2 1 5 5 C 1.39428 * 120.13877 * 359.95656 * 4 3 2 6 6 C 1.39423 * 118.95070 * 0.02562 * 5 4 3 7 7 C 1.46924 * 120.58929 * 179.97438 * 6 5 4 8 8 O 1.21565 * 120.00444 * 0.02562 * 7 6 5 9 9 O 1.34824 * 119.99647 * 180.02562 * 7 6 5 10 10 C 1.45196 * 116.99854 * 179.97438 * 9 7 6 11 11 H 1.09002 * 109.47267 * 329.99890 * 10 9 7 12 12 C 1.50706 * 109.47154 * 209.99963 * 10 9 7 13 13 H 1.07998 * 119.99604 * 0.02562 * 12 10 9 14 14 C 1.37872 * 119.99932 * 180.02562 * 12 10 9 15 15 N 1.31517 * 120.00240 * 0.02562 * 14 12 10 16 16 Si 1.86803 * 120.00092 * 180.02562 * 14 12 10 17 17 H 1.48498 * 109.47203 * 59.99718 * 16 14 12 18 18 H 1.48497 * 109.47162 * 180.02562 * 16 14 12 19 19 H 1.48504 * 109.46911 * 300.00070 * 16 14 12 20 20 C 1.52999 * 109.47338 * 90.00250 * 10 9 7 21 21 C 1.53006 * 117.49429 * 8.74574 * 20 10 9 22 22 C 1.52998 * 117.49781 * 300.08934 * 20 10 9 23 23 C 1.34658 * 119.46730 * 180.24268 * 2 1 3 24 24 O 1.21877 * 120.10633 * 0.02562 * 23 2 1 25 25 H 1.09004 * 109.46874 * 0.02562 * 1 2 3 26 26 H 1.09003 * 109.47138 * 119.99653 * 1 2 3 27 27 H 1.08998 * 109.47106 * 240.00107 * 1 2 3 28 28 H 1.07994 * 119.37464 * 0.02562 * 3 2 1 29 29 H 1.08002 * 119.92980 * 179.97438 * 4 3 2 30 30 H 1.07997 * 120.52251 * 179.97438 * 5 4 3 31 31 H 0.96996 * 119.99893 * 180.02562 * 15 14 12 32 32 H 1.09001 * 115.55589 * 154.41453 * 20 10 9 33 33 H 1.08997 * 117.50166 * 359.97438 * 21 20 10 34 34 H 1.09002 * 117.49943 * 145.02659 * 21 20 10 35 35 H 1.09003 * 117.50012 * 214.97750 * 22 20 10 36 36 H 1.09009 * 117.49886 * 359.97438 * 22 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1312 1.1790 0.0000 4 6 3.4884 1.2211 -0.0005 5 6 4.2255 0.0376 -0.0002 6 6 3.5468 -1.1802 0.0002 7 6 4.2875 -2.4491 0.0000 8 8 5.5032 -2.4432 0.0000 9 8 3.6190 -3.6199 -0.0001 10 6 4.4157 -4.8338 -0.0009 11 1 5.3589 -4.6491 -0.5150 12 6 3.6623 -5.9287 -0.7114 13 1 2.6829 -5.7316 -1.1217 14 6 4.2234 -7.1817 -0.8376 15 7 5.4158 -7.4217 -0.3374 16 14 3.2899 -8.5387 -1.7189 17 1 3.0188 -8.1243 -3.1189 18 1 4.1041 -9.7805 -1.7185 19 1 2.0042 -8.7900 -1.0194 20 6 4.6960 -5.2608 1.4413 21 6 3.9591 -4.5139 2.5550 22 6 5.4553 -4.2774 2.3343 23 6 2.1274 -1.1724 -0.0050 24 8 1.5102 -2.2233 -0.0099 25 1 -0.3633 1.0277 -0.0005 26 1 -0.3633 -0.5138 -0.8900 27 1 -0.3633 -0.5138 0.8900 28 1 1.5724 2.1031 0.0004 29 1 3.9980 2.1734 -0.0009 30 1 5.3052 0.0639 -0.0010 31 1 5.8106 -8.3032 -0.4265 32 1 4.8858 -6.3240 1.5885 33 1 3.2750 -3.7182 2.2603 34 1 3.6646 -5.0857 3.4351 35 1 6.1444 -4.6937 3.0691 36 1 5.7555 -3.3264 1.8941 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001347938747.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:15 Heat of formation + Delta-G solvation = -50.015146 kcal Electronic energy + Delta-G solvation = -21847.919036 eV Core-core repulsion = 18492.298780 eV Total energy + Delta-G solvation = -3355.620256 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.33442 -39.29637 -36.91532 -36.37453 -34.52626 -34.34427 -32.65606 -30.21592 -27.83680 -27.74248 -25.08903 -23.10536 -22.64832 -21.32483 -20.88522 -19.01156 -17.80308 -17.43019 -16.78434 -16.36047 -16.13407 -15.72401 -15.41550 -15.07129 -14.54449 -14.30097 -13.76014 -13.19510 -12.95866 -12.88553 -12.50314 -12.32090 -12.23731 -11.90060 -11.41693 -11.20209 -10.96893 -10.83747 -10.44108 -10.18073 -10.07948 -9.93526 -9.88390 -9.57657 -9.31677 -8.94951 -8.37130 -8.29339 -8.01735 -6.05135 -4.10180 0.39977 1.84969 2.46520 3.02122 3.36286 3.38487 3.42263 3.81048 3.96517 4.27379 4.41505 4.46665 4.87303 4.92790 5.07000 5.07752 5.11667 5.27503 5.40521 5.51897 5.76939 5.87316 6.00269 6.16882 6.25851 6.31619 6.37096 6.61305 6.82110 6.90398 7.05821 7.17099 7.35964 7.71829 7.74950 7.98299 8.10808 8.28848 8.79026 9.06284 9.53167 11.02413 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.022152 B = 0.005559 C = 0.004974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.697774 B = 5035.561308 C = 5627.379942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.502 5.502 3 C 0.160 3.840 4 C -0.248 4.248 5 C 0.051 3.949 6 C -0.245 4.245 7 C 0.513 3.487 8 O -0.524 6.524 9 O -0.318 6.318 10 C 0.244 3.756 11 H 0.051 0.949 12 C -0.510 4.510 13 H 0.070 0.930 14 C 0.063 3.937 15 N -0.889 5.889 16 Si 0.909 3.091 17 H -0.275 1.275 18 H -0.286 1.286 19 H -0.274 1.274 20 C -0.114 4.114 21 C -0.194 4.194 22 C -0.211 4.211 23 C 0.519 3.481 24 O -0.492 6.492 25 H 0.087 0.913 26 H 0.084 0.916 27 H 0.083 0.917 28 H 0.165 0.835 29 H 0.152 0.848 30 H 0.148 0.852 31 H 0.265 0.735 32 H 0.129 0.871 33 H 0.085 0.915 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.235 19.826 1.928 21.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.213 5.213 3 C 0.030 3.970 4 C -0.272 4.272 5 C 0.029 3.971 6 C -0.251 4.251 7 C 0.358 3.642 8 O -0.417 6.417 9 O -0.232 6.232 10 C 0.191 3.809 11 H 0.068 0.932 12 C -0.548 4.548 13 H 0.088 0.912 14 C -0.139 4.139 15 N -0.527 5.527 16 Si 0.736 3.264 17 H -0.201 1.201 18 H -0.211 1.211 19 H -0.200 1.200 20 C -0.132 4.132 21 C -0.231 4.231 22 C -0.248 4.248 23 C 0.318 3.682 24 O -0.367 6.367 25 H 0.106 0.894 26 H 0.102 0.898 27 H 0.102 0.898 28 H 0.182 0.818 29 H 0.170 0.830 30 H 0.166 0.834 31 H 0.075 0.925 32 H 0.146 0.854 33 H 0.103 0.897 34 H 0.094 0.906 35 H 0.094 0.906 36 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -7.248 18.832 1.944 20.272 hybrid contribution -0.221 -0.603 -0.289 0.705 sum -7.469 18.229 1.654 19.769 Atomic orbital electron populations 1.22181 0.76922 1.03714 1.05096 1.45647 1.09459 1.06895 1.59280 1.22208 0.94206 0.89453 0.91176 1.20571 0.92310 0.99405 1.14907 1.22011 1.01602 0.90248 0.83261 1.20468 0.92455 0.93520 1.18654 1.20164 0.85569 0.85252 0.73174 1.90761 1.14484 1.88477 1.48025 1.86806 1.41335 1.14371 1.80729 1.20144 0.91743 0.77304 0.91689 0.93169 1.20950 1.04283 0.94046 1.35551 0.91174 1.24887 0.95110 0.98242 0.95693 1.69981 1.15079 1.22692 1.44927 0.86378 0.79606 0.80323 0.80081 1.20054 1.21138 1.19974 1.23001 0.99386 0.98899 0.91958 1.22795 0.94357 1.04606 1.01324 1.23147 0.93713 1.03013 1.04925 1.17073 0.88388 0.82900 0.79832 1.91077 1.68574 1.28486 1.48613 0.89418 0.89766 0.89789 0.81807 0.83033 0.83382 0.92538 0.85357 0.89688 0.90616 0.90642 0.88881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.49 10.04 59.85 0.60 1.09 16 2 N -0.50 -5.64 2.98 -126.75 -0.38 -6.02 16 3 C 0.16 1.17 10.28 -16.85 -0.17 0.99 16 4 C -0.25 -2.06 9.99 -40.02 -0.40 -2.46 16 5 C 0.05 0.66 9.70 -38.70 -0.38 0.29 16 6 C -0.25 -4.45 5.92 -104.52 -0.62 -5.07 16 7 C 0.51 12.01 6.83 34.25 0.23 12.25 16 8 O -0.52 -12.86 13.48 -19.32 -0.26 -13.12 16 9 O -0.32 -8.52 6.58 -48.04 -0.32 -8.84 16 10 C 0.24 7.02 2.41 -27.88 -0.07 6.96 16 11 H 0.05 1.58 7.16 -51.93 -0.37 1.21 16 12 C -0.51 -15.33 8.90 -34.44 -0.31 -15.63 16 13 H 0.07 2.13 7.81 -52.49 -0.41 1.72 16 14 C 0.06 1.81 5.20 -17.82 -0.09 1.71 16 15 N -0.89 -26.24 11.59 55.43 0.64 -25.59 16 16 Si 0.91 22.20 29.54 -169.99 -5.02 17.18 16 17 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 18 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 19 H -0.27 -6.63 7.11 56.52 0.40 -6.22 16 20 C -0.11 -3.05 5.27 -90.62 -0.48 -3.53 16 21 C -0.19 -4.56 9.80 -26.69 -0.26 -4.82 16 22 C -0.21 -4.98 9.85 -26.69 -0.26 -5.24 16 23 C 0.52 9.05 7.44 -14.90 -0.11 8.94 16 24 O -0.49 -10.79 15.20 -16.44 -0.25 -11.04 16 25 H 0.09 0.29 7.70 -51.93 -0.40 -0.11 16 26 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 27 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 28 H 0.16 0.36 7.79 -52.49 -0.41 -0.05 16 29 H 0.15 0.71 8.06 -52.49 -0.42 0.29 16 30 H 0.15 1.81 7.69 -52.49 -0.40 1.41 16 31 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 32 H 0.13 3.68 6.46 -51.93 -0.34 3.35 16 33 H 0.08 2.06 6.91 -51.93 -0.36 1.70 16 34 H 0.08 1.61 8.14 -51.93 -0.42 1.19 16 35 H 0.08 1.62 8.14 -51.93 -0.42 1.20 16 36 H 0.09 2.25 5.36 -51.92 -0.28 1.97 16 LS Contribution 308.12 15.07 4.64 4.64 Total: -1.00 -37.22 308.12 -7.47 -44.68 By element: Atomic # 1 Polarization: 6.84 SS G_CDS: -4.22 Total: 2.63 kcal Atomic # 6 Polarization: -2.22 SS G_CDS: -2.31 Total: -4.53 kcal Atomic # 7 Polarization: -31.88 SS G_CDS: 0.26 Total: -31.62 kcal Atomic # 8 Polarization: -32.16 SS G_CDS: -0.83 Total: -32.99 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -37.22 -7.47 -44.68 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347938747.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.333 kcal (2) G-P(sol) polarization free energy of solvation -37.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds