Wall clock time and date at job start Mon Mar 30 2020 01:59:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.35418 * 119.46845 * 2 1 4 4 C 1.35787 * 121.24621 * 180.02562 * 3 2 1 5 5 C 1.39428 * 120.13877 * 359.95656 * 4 3 2 6 6 C 1.39423 * 118.95070 * 0.02562 * 5 4 3 7 7 C 1.46924 * 120.58929 * 179.97438 * 6 5 4 8 8 O 1.21565 * 120.00444 * 0.02562 * 7 6 5 9 9 O 1.34824 * 119.99647 * 180.02562 * 7 6 5 10 10 C 1.45196 * 116.99854 * 179.97438 * 9 7 6 11 11 H 1.09002 * 109.47267 * 329.99890 * 10 9 7 12 12 C 1.50706 * 109.47154 * 209.99963 * 10 9 7 13 13 H 1.07998 * 119.99604 * 0.02562 * 12 10 9 14 14 C 1.37872 * 119.99932 * 180.02562 * 12 10 9 15 15 N 1.31517 * 120.00240 * 0.02562 * 14 12 10 16 16 Si 1.86803 * 120.00092 * 180.02562 * 14 12 10 17 17 H 1.48498 * 109.47203 * 59.99718 * 16 14 12 18 18 H 1.48497 * 109.47162 * 180.02562 * 16 14 12 19 19 H 1.48504 * 109.46911 * 300.00070 * 16 14 12 20 20 C 1.52999 * 109.47338 * 90.00250 * 10 9 7 21 21 C 1.53006 * 117.49429 * 8.74574 * 20 10 9 22 22 C 1.52998 * 117.49781 * 300.08934 * 20 10 9 23 23 C 1.34658 * 119.46730 * 180.24268 * 2 1 3 24 24 O 1.21877 * 120.10633 * 0.02562 * 23 2 1 25 25 H 1.09004 * 109.46874 * 0.02562 * 1 2 3 26 26 H 1.09003 * 109.47138 * 119.99653 * 1 2 3 27 27 H 1.08998 * 109.47106 * 240.00107 * 1 2 3 28 28 H 1.07994 * 119.37464 * 0.02562 * 3 2 1 29 29 H 1.08002 * 119.92980 * 179.97438 * 4 3 2 30 30 H 1.07997 * 120.52251 * 179.97438 * 5 4 3 31 31 H 0.96996 * 119.99893 * 180.02562 * 15 14 12 32 32 H 1.09001 * 115.55589 * 154.41453 * 20 10 9 33 33 H 1.08997 * 117.50166 * 359.97438 * 21 20 10 34 34 H 1.09002 * 117.49943 * 145.02659 * 21 20 10 35 35 H 1.09003 * 117.50012 * 214.97750 * 22 20 10 36 36 H 1.09009 * 117.49886 * 359.97438 * 22 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1312 1.1790 0.0000 4 6 3.4884 1.2211 -0.0005 5 6 4.2255 0.0376 -0.0002 6 6 3.5468 -1.1802 0.0002 7 6 4.2875 -2.4491 0.0000 8 8 5.5032 -2.4432 0.0000 9 8 3.6190 -3.6199 -0.0001 10 6 4.4157 -4.8338 -0.0009 11 1 5.3589 -4.6491 -0.5150 12 6 3.6623 -5.9287 -0.7114 13 1 2.6829 -5.7316 -1.1217 14 6 4.2234 -7.1817 -0.8376 15 7 5.4158 -7.4217 -0.3374 16 14 3.2899 -8.5387 -1.7189 17 1 3.0188 -8.1243 -3.1189 18 1 4.1041 -9.7805 -1.7185 19 1 2.0042 -8.7900 -1.0194 20 6 4.6960 -5.2608 1.4413 21 6 3.9591 -4.5139 2.5550 22 6 5.4553 -4.2774 2.3343 23 6 2.1274 -1.1724 -0.0050 24 8 1.5102 -2.2233 -0.0099 25 1 -0.3633 1.0277 -0.0005 26 1 -0.3633 -0.5138 -0.8900 27 1 -0.3633 -0.5138 0.8900 28 1 1.5724 2.1031 0.0004 29 1 3.9980 2.1734 -0.0009 30 1 5.3052 0.0639 -0.0010 31 1 5.8106 -8.3032 -0.4265 32 1 4.8858 -6.3240 1.5885 33 1 3.2750 -3.7182 2.2603 34 1 3.6646 -5.0857 3.4351 35 1 6.1444 -4.6937 3.0691 36 1 5.7555 -3.3264 1.8941 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001347938747.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:15 Heat of formation + Delta-G solvation = -75.305059 kcal Electronic energy + Delta-G solvation = -21849.015689 eV Core-core repulsion = 18492.298780 eV Total energy + Delta-G solvation = -3356.716909 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.43362 -41.08604 -38.32105 -38.05717 -36.37737 -35.46670 -34.89101 -31.32026 -29.86692 -28.60062 -26.43406 -25.11488 -23.68095 -23.24853 -22.46958 -20.97028 -19.31057 -18.83120 -18.33721 -17.67888 -17.44188 -17.40128 -16.97640 -16.67629 -16.19955 -15.64321 -15.38608 -14.75671 -14.37644 -14.10321 -13.64137 -13.57652 -13.45033 -13.24839 -13.11696 -12.94301 -12.83010 -12.79458 -12.40113 -12.22074 -11.99721 -11.55937 -11.34852 -11.11722 -11.07189 -10.99016 -10.49518 -10.45067 -9.07655 -8.28063 -6.44221 -0.61187 0.86952 1.36108 1.41487 1.49158 1.54333 1.56300 2.14980 2.44765 2.69452 2.97970 3.11655 3.56533 3.79602 3.95460 4.02535 4.05247 4.18406 4.25062 4.26011 4.35969 4.43439 4.69712 4.77447 4.82819 4.90657 4.94204 4.95955 5.22915 5.25795 5.26333 5.51029 5.53147 5.54463 5.88753 5.96604 6.14178 6.59550 6.95464 7.05067 7.27315 8.79718 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.022152 B = 0.005559 C = 0.004974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.697774 B = 5035.561308 C = 5627.379942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.055 3.945 2 N -0.495 5.495 3 C 0.203 3.797 4 C -0.249 4.249 5 C 0.084 3.916 6 C -0.325 4.325 7 C 0.503 3.497 8 O -0.557 6.557 9 O -0.337 6.337 10 C 0.250 3.750 11 H 0.004 0.996 12 C -0.546 4.546 13 H 0.053 0.947 14 C 0.020 3.980 15 N -0.911 5.911 16 Si 0.980 3.020 17 H -0.270 1.270 18 H -0.269 1.269 19 H -0.268 1.268 20 C -0.144 4.144 21 C -0.170 4.170 22 C -0.192 4.192 23 C 0.512 3.488 24 O -0.563 6.563 25 H 0.153 0.847 26 H 0.070 0.930 27 H 0.071 0.929 28 H 0.243 0.757 29 H 0.206 0.794 30 H 0.149 0.851 31 H 0.271 0.729 32 H 0.107 0.893 33 H 0.073 0.927 34 H 0.104 0.896 35 H 0.101 0.899 36 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.879 23.657 2.406 25.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 N -0.202 5.202 3 C 0.072 3.928 4 C -0.271 4.271 5 C 0.061 3.939 6 C -0.330 4.330 7 C 0.352 3.648 8 O -0.453 6.453 9 O -0.252 6.252 10 C 0.196 3.804 11 H 0.022 0.978 12 C -0.584 4.584 13 H 0.072 0.928 14 C -0.180 4.180 15 N -0.549 5.549 16 Si 0.803 3.197 17 H -0.195 1.195 18 H -0.193 1.193 19 H -0.192 1.192 20 C -0.163 4.163 21 C -0.207 4.207 22 C -0.229 4.229 23 C 0.314 3.686 24 O -0.445 6.445 25 H 0.171 0.829 26 H 0.089 0.911 27 H 0.090 0.910 28 H 0.259 0.741 29 H 0.223 0.777 30 H 0.166 0.834 31 H 0.080 0.920 32 H 0.125 0.875 33 H 0.092 0.908 34 H 0.123 0.877 35 H 0.120 0.880 36 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -8.899 22.731 2.430 24.532 hybrid contribution 0.262 -1.425 -0.452 1.518 sum -8.637 21.306 1.978 23.075 Atomic orbital electron populations 1.22539 0.74446 1.07524 1.03997 1.45717 1.11153 1.06467 1.56836 1.23548 0.94551 0.89980 0.84739 1.21206 0.92844 0.99187 1.13821 1.22363 1.02116 0.90173 0.79289 1.20174 0.93240 0.92316 1.27309 1.21136 0.85868 0.85882 0.71938 1.90694 1.15619 1.88840 1.50144 1.86805 1.41559 1.15083 1.81773 1.19736 0.89828 0.78374 0.92478 0.97825 1.21155 1.04102 0.95697 1.37413 0.92840 1.25798 0.95972 1.00256 0.95930 1.70097 1.16228 1.23509 1.45058 0.85293 0.78451 0.77196 0.78777 1.19473 1.19317 1.19243 1.22710 1.03270 0.98284 0.92000 1.22779 0.94109 1.03390 1.00462 1.23139 0.94355 1.01551 1.03840 1.17057 0.88216 0.83952 0.79419 1.91019 1.69688 1.31309 1.52492 0.82885 0.91141 0.90976 0.74136 0.77721 0.83351 0.91984 0.87486 0.90810 0.87742 0.88034 0.89768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.67 10.04 127.77 1.28 1.95 16 2 N -0.49 -9.60 2.98 -673.12 -2.00 -11.60 16 3 C 0.20 1.57 10.28 83.57 0.86 2.43 16 4 C -0.25 -2.70 9.99 21.99 0.22 -2.48 16 5 C 0.08 2.06 9.70 22.84 0.22 2.28 16 6 C -0.32 -12.35 5.92 -19.80 -0.12 -12.47 16 7 C 0.50 25.68 6.83 70.10 0.48 26.16 16 8 O -0.56 -29.81 13.48 19.62 0.26 -29.54 16 9 O -0.34 -19.83 6.58 -50.48 -0.33 -20.16 16 10 C 0.25 15.65 2.41 29.85 0.07 15.72 16 11 H 0.00 0.28 7.16 -2.39 -0.02 0.27 16 12 C -0.55 -35.28 8.90 25.60 0.23 -35.06 16 13 H 0.05 3.52 7.81 -2.91 -0.02 3.49 16 14 C 0.02 1.23 5.20 84.65 0.44 1.67 16 15 N -0.91 -56.21 11.59 21.45 0.25 -55.96 16 16 Si 0.98 47.01 29.54 68.60 2.03 49.03 16 17 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 18 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 19 H -0.27 -12.48 7.11 99.48 0.71 -11.78 16 20 C -0.14 -8.21 5.27 -10.79 -0.06 -8.26 16 21 C -0.17 -8.31 9.80 30.62 0.30 -8.01 16 22 C -0.19 -9.40 9.85 30.62 0.30 -9.10 16 23 C 0.51 18.39 7.44 85.18 0.63 19.02 16 24 O -0.56 -26.69 15.20 15.61 0.24 -26.45 16 25 H 0.15 -0.13 7.70 -2.39 -0.02 -0.15 16 26 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 27 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 28 H 0.24 -1.63 7.79 -2.91 -0.02 -1.66 16 29 H 0.21 0.21 8.06 -2.91 -0.02 0.19 16 30 H 0.15 3.55 7.69 -2.91 -0.02 3.53 16 31 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 32 H 0.11 6.51 6.46 -2.39 -0.02 6.50 16 33 H 0.07 3.77 6.91 -2.39 -0.02 3.76 16 34 H 0.10 4.43 8.14 -2.39 -0.02 4.41 16 35 H 0.10 4.38 8.14 -2.39 -0.02 4.36 16 36 H 0.08 4.29 5.36 -2.38 -0.01 4.28 16 Total: -1.00 -96.38 308.12 6.41 -89.97 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: 1.10 Total: 10.85 kcal Atomic # 6 Polarization: -11.01 SS G_CDS: 4.86 Total: -6.15 kcal Atomic # 7 Polarization: -65.81 SS G_CDS: -1.75 Total: -67.56 kcal Atomic # 8 Polarization: -76.32 SS G_CDS: 0.17 Total: -76.16 kcal Atomic # 14 Polarization: 47.01 SS G_CDS: 2.03 Total: 49.03 kcal Total: -96.38 6.41 -89.97 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347938747.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.668 kcal (2) G-P(sol) polarization free energy of solvation -96.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds