Wall clock time and date at job start Mon Mar 30 2020 01:59:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.35418 * 119.46612 * 2 1 4 4 C 1.35778 * 121.24786 * 180.02562 * 3 2 1 5 5 C 1.39430 * 120.13957 * 359.94956 * 4 3 2 6 6 C 1.39424 * 118.95245 * 0.02902 * 5 4 3 7 7 C 1.46917 * 120.59306 * 179.97438 * 6 5 4 8 8 O 1.21571 * 120.00257 * 0.02562 * 7 6 5 9 9 O 1.34825 * 119.99591 * 179.97438 * 7 6 5 10 10 C 1.45200 * 116.99997 * 180.02562 * 9 7 6 11 11 H 1.09002 * 109.46620 * 30.00162 * 10 9 7 12 12 C 1.50701 * 109.47024 * 149.99727 * 10 9 7 13 13 H 1.07999 * 120.00531 * 0.02562 * 12 10 9 14 14 C 1.37885 * 119.99645 * 179.97438 * 12 10 9 15 15 N 1.31511 * 119.99763 * 0.02562 * 14 12 10 16 16 Si 1.86796 * 119.99682 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.47274 * 0.02562 * 16 14 12 18 18 H 1.48511 * 109.46619 * 120.00442 * 16 14 12 19 19 H 1.48496 * 109.47411 * 240.00046 * 16 14 12 20 20 C 1.52996 * 109.47367 * 270.00303 * 10 9 7 21 21 C 1.53002 * 117.49888 * 356.25163 * 20 10 9 22 22 C 1.53000 * 117.50107 * 64.90925 * 20 10 9 23 23 C 1.34651 * 119.47135 * 180.24658 * 2 1 3 24 24 O 1.21881 * 120.10703 * 0.02562 * 23 2 1 25 25 H 1.08991 * 109.47405 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.47134 * 120.00230 * 1 2 3 27 27 H 1.09001 * 109.47143 * 239.99854 * 1 2 3 28 28 H 1.08003 * 119.37528 * 359.97438 * 3 2 1 29 29 H 1.08005 * 119.93306 * 179.97438 * 4 3 2 30 30 H 1.08005 * 120.52473 * 179.97438 * 5 4 3 31 31 H 0.97007 * 119.99127 * 179.97438 * 15 14 12 32 32 H 1.09002 * 115.54951 * 210.58137 * 20 10 9 33 33 H 1.09000 * 117.49996 * 215.00804 * 21 20 10 34 34 H 1.08999 * 117.49664 * 0.02562 * 21 20 10 35 35 H 1.09008 * 117.49673 * 359.97438 * 22 20 10 36 36 H 1.08999 * 117.49959 * 144.99502 * 22 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1311 1.1790 0.0000 4 6 3.4883 1.2212 -0.0005 5 6 4.2255 0.0378 0.0000 6 6 3.5469 -1.1802 0.0004 7 6 4.2877 -2.4489 0.0004 8 8 5.5034 -2.4430 0.0005 9 8 3.6192 -3.6197 0.0014 10 6 4.4159 -4.8337 0.0019 11 1 5.3594 -4.6487 0.5153 12 6 3.6630 -5.9283 0.7132 13 1 2.6836 -5.7315 1.1236 14 6 4.2243 -7.1814 0.8393 15 7 5.4168 -7.4211 0.3392 16 14 3.2908 -8.5384 1.7205 17 1 1.9812 -8.0162 2.1869 18 1 3.0674 -9.6719 0.7873 19 1 4.0816 -9.0063 2.8871 20 6 4.6953 -5.2609 -1.4404 21 6 4.0495 -4.4397 -2.5582 22 6 5.5542 -4.3304 -2.2991 23 6 2.1275 -1.1723 -0.0050 24 8 1.5103 -2.2233 -0.0100 25 1 -0.3634 1.0276 -0.0005 26 1 -0.3633 -0.5139 -0.8900 27 1 -0.3633 -0.5139 0.8900 28 1 1.5723 2.1032 -0.0004 29 1 3.9978 2.1735 -0.0009 30 1 5.3052 0.0641 -0.0008 31 1 5.8117 -8.3027 0.4283 32 1 4.8010 -6.3339 -1.6008 33 1 3.7302 -4.9724 -3.4540 34 1 3.4259 -3.5949 -2.2661 35 1 5.9198 -3.4135 -1.8366 36 1 6.2248 -4.7911 -3.0244 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001347938748.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:17 Heat of formation + Delta-G solvation = -50.238831 kcal Electronic energy + Delta-G solvation = -21843.806365 eV Core-core repulsion = 18488.176409 eV Total energy + Delta-G solvation = -3355.629955 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.33379 -39.29238 -36.91337 -36.37375 -34.53082 -34.34645 -32.65920 -30.21590 -27.83807 -27.74666 -25.08977 -23.09822 -22.64599 -21.31683 -20.89174 -19.01744 -17.81571 -17.43013 -16.79461 -16.34622 -16.14034 -15.73318 -15.40166 -15.07233 -14.54407 -14.30105 -13.76001 -13.19744 -12.95906 -12.87516 -12.50504 -12.32479 -12.24532 -11.90001 -11.42995 -11.19201 -10.93163 -10.88333 -10.45769 -10.16503 -10.08059 -9.91720 -9.86584 -9.57902 -9.30830 -8.95866 -8.37772 -8.30317 -8.01660 -6.05492 -4.10376 0.40047 1.85048 2.46594 3.02176 3.32590 3.38998 3.45625 3.81078 3.96574 4.27386 4.41579 4.46622 4.87331 4.92886 5.06602 5.07832 5.11787 5.26890 5.40654 5.52145 5.76955 5.87358 5.99846 6.15924 6.26799 6.30975 6.37072 6.60260 6.82078 6.90518 7.04766 7.16676 7.35836 7.71358 7.75124 7.97425 8.10936 8.29138 8.79228 9.06851 9.53038 11.02115 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.022076 B = 0.005566 C = 0.004961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.051056 B = 5029.698156 C = 5642.255844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.502 5.502 3 C 0.160 3.840 4 C -0.249 4.249 5 C 0.051 3.949 6 C -0.245 4.245 7 C 0.513 3.487 8 O -0.524 6.524 9 O -0.318 6.318 10 C 0.243 3.757 11 H 0.051 0.949 12 C -0.509 4.509 13 H 0.071 0.929 14 C 0.062 3.938 15 N -0.887 5.887 16 Si 0.908 3.092 17 H -0.270 1.270 18 H -0.282 1.282 19 H -0.283 1.283 20 C -0.112 4.112 21 C -0.195 4.195 22 C -0.208 4.208 23 C 0.519 3.481 24 O -0.492 6.492 25 H 0.087 0.913 26 H 0.083 0.917 27 H 0.084 0.916 28 H 0.165 0.835 29 H 0.152 0.848 30 H 0.148 0.852 31 H 0.264 0.736 32 H 0.126 0.874 33 H 0.076 0.924 34 H 0.083 0.917 35 H 0.095 0.905 36 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.220 19.868 -1.929 21.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.213 5.213 3 C 0.030 3.970 4 C -0.272 4.272 5 C 0.029 3.971 6 C -0.251 4.251 7 C 0.358 3.642 8 O -0.418 6.418 9 O -0.232 6.232 10 C 0.190 3.810 11 H 0.068 0.932 12 C -0.548 4.548 13 H 0.089 0.911 14 C -0.140 4.140 15 N -0.526 5.526 16 Si 0.735 3.265 17 H -0.195 1.195 18 H -0.208 1.208 19 H -0.209 1.209 20 C -0.130 4.130 21 C -0.232 4.232 22 C -0.245 4.245 23 C 0.318 3.682 24 O -0.367 6.367 25 H 0.106 0.894 26 H 0.102 0.898 27 H 0.102 0.898 28 H 0.182 0.818 29 H 0.170 0.830 30 H 0.166 0.834 31 H 0.073 0.927 32 H 0.144 0.856 33 H 0.094 0.906 34 H 0.101 0.899 35 H 0.113 0.887 36 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -7.240 18.879 -1.946 20.314 hybrid contribution -0.195 -0.621 0.276 0.707 sum -7.435 18.258 -1.669 19.784 Atomic orbital electron populations 1.22179 0.76922 1.03713 1.05100 1.45645 1.09460 1.06894 1.59279 1.22207 0.94207 0.89453 0.91176 1.20570 0.92310 0.99406 1.14911 1.22014 1.01599 0.90247 0.83261 1.20466 0.92448 0.93517 1.18657 1.20164 0.85567 0.85254 0.73187 1.90756 1.14488 1.88474 1.48058 1.86813 1.41324 1.14357 1.80731 1.20162 0.91774 0.77346 0.91672 0.93171 1.21034 1.04313 0.94013 1.35399 0.91070 1.24900 0.95122 0.98274 0.95721 1.70022 1.15073 1.22500 1.44957 0.86276 0.79927 0.81145 0.79159 1.19465 1.20814 1.20855 1.22983 0.99243 0.98662 0.92151 1.22799 0.95216 1.04190 1.01042 1.23141 0.92734 1.03732 1.04920 1.17076 0.88393 0.82903 0.79840 1.91080 1.68580 1.28475 1.48601 0.89418 0.89794 0.89759 0.81807 0.83034 0.83384 0.92667 0.85624 0.90579 0.89869 0.88703 0.90629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.49 10.04 59.85 0.60 1.09 16 2 N -0.50 -5.64 2.98 -126.75 -0.38 -6.02 16 3 C 0.16 1.16 10.28 -16.85 -0.17 0.99 16 4 C -0.25 -2.06 9.99 -40.02 -0.40 -2.46 16 5 C 0.05 0.66 9.70 -38.70 -0.38 0.28 16 6 C -0.25 -4.45 5.92 -104.52 -0.62 -5.07 16 7 C 0.51 12.00 6.73 34.24 0.23 12.23 16 8 O -0.52 -12.84 13.38 -19.32 -0.26 -13.10 16 9 O -0.32 -8.52 6.68 -48.04 -0.32 -8.84 16 10 C 0.24 7.00 2.39 -27.88 -0.07 6.93 16 11 H 0.05 1.58 7.16 -51.93 -0.37 1.20 16 12 C -0.51 -15.30 8.90 -34.44 -0.31 -15.61 16 13 H 0.07 2.17 7.81 -52.49 -0.41 1.76 16 14 C 0.06 1.78 5.16 -17.82 -0.09 1.69 16 15 N -0.89 -26.22 11.66 55.43 0.65 -25.57 16 16 Si 0.91 22.18 29.54 -169.99 -5.02 17.16 16 17 H -0.27 -6.57 7.11 56.52 0.40 -6.16 16 18 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 19 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 20 C -0.11 -2.99 5.23 -90.62 -0.47 -3.47 16 21 C -0.20 -4.58 9.74 -26.69 -0.26 -4.84 16 22 C -0.21 -4.92 9.87 -26.70 -0.26 -5.19 16 23 C 0.52 9.05 7.44 -14.90 -0.11 8.94 16 24 O -0.49 -10.79 15.20 -16.44 -0.25 -11.04 16 25 H 0.09 0.29 7.69 -51.93 -0.40 -0.11 16 26 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 27 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 28 H 0.16 0.35 7.79 -52.48 -0.41 -0.05 16 29 H 0.15 0.71 8.06 -52.48 -0.42 0.28 16 30 H 0.15 1.81 7.69 -52.48 -0.40 1.41 16 31 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 32 H 0.13 3.61 6.54 -51.93 -0.34 3.27 16 33 H 0.08 1.61 8.14 -51.93 -0.42 1.19 16 34 H 0.08 2.00 6.67 -51.93 -0.35 1.65 16 35 H 0.09 2.30 5.55 -51.92 -0.29 2.01 16 36 H 0.08 1.63 8.14 -51.93 -0.42 1.21 16 LS Contribution 307.99 15.07 4.64 4.64 Total: -1.00 -37.28 307.99 -7.47 -44.75 By element: Atomic # 1 Polarization: 6.71 SS G_CDS: -4.22 Total: 2.49 kcal Atomic # 6 Polarization: -2.16 SS G_CDS: -2.31 Total: -4.47 kcal Atomic # 7 Polarization: -31.86 SS G_CDS: 0.27 Total: -31.59 kcal Atomic # 8 Polarization: -32.15 SS G_CDS: -0.83 Total: -32.98 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -37.28 -7.47 -44.75 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347938748.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.489 kcal (2) G-P(sol) polarization free energy of solvation -37.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds