Wall clock time and date at job start Mon Mar 30 2020 01:59:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.35418 * 119.46612 * 2 1 4 4 C 1.35778 * 121.24786 * 180.02562 * 3 2 1 5 5 C 1.39430 * 120.13957 * 359.94956 * 4 3 2 6 6 C 1.39424 * 118.95245 * 0.02902 * 5 4 3 7 7 C 1.46917 * 120.59306 * 179.97438 * 6 5 4 8 8 O 1.21571 * 120.00257 * 0.02562 * 7 6 5 9 9 O 1.34825 * 119.99591 * 179.97438 * 7 6 5 10 10 C 1.45200 * 116.99997 * 180.02562 * 9 7 6 11 11 H 1.09002 * 109.46620 * 30.00162 * 10 9 7 12 12 C 1.50701 * 109.47024 * 149.99727 * 10 9 7 13 13 H 1.07999 * 120.00531 * 0.02562 * 12 10 9 14 14 C 1.37885 * 119.99645 * 179.97438 * 12 10 9 15 15 N 1.31511 * 119.99763 * 0.02562 * 14 12 10 16 16 Si 1.86796 * 119.99682 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.47274 * 0.02562 * 16 14 12 18 18 H 1.48511 * 109.46619 * 120.00442 * 16 14 12 19 19 H 1.48496 * 109.47411 * 240.00046 * 16 14 12 20 20 C 1.52996 * 109.47367 * 270.00303 * 10 9 7 21 21 C 1.53002 * 117.49888 * 356.25163 * 20 10 9 22 22 C 1.53000 * 117.50107 * 64.90925 * 20 10 9 23 23 C 1.34651 * 119.47135 * 180.24658 * 2 1 3 24 24 O 1.21881 * 120.10703 * 0.02562 * 23 2 1 25 25 H 1.08991 * 109.47405 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.47134 * 120.00230 * 1 2 3 27 27 H 1.09001 * 109.47143 * 239.99854 * 1 2 3 28 28 H 1.08003 * 119.37528 * 359.97438 * 3 2 1 29 29 H 1.08005 * 119.93306 * 179.97438 * 4 3 2 30 30 H 1.08005 * 120.52473 * 179.97438 * 5 4 3 31 31 H 0.97007 * 119.99127 * 179.97438 * 15 14 12 32 32 H 1.09002 * 115.54951 * 210.58137 * 20 10 9 33 33 H 1.09000 * 117.49996 * 215.00804 * 21 20 10 34 34 H 1.08999 * 117.49664 * 0.02562 * 21 20 10 35 35 H 1.09008 * 117.49673 * 359.97438 * 22 20 10 36 36 H 1.08999 * 117.49959 * 144.99502 * 22 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1311 1.1790 0.0000 4 6 3.4883 1.2212 -0.0005 5 6 4.2255 0.0378 0.0000 6 6 3.5469 -1.1802 0.0004 7 6 4.2877 -2.4489 0.0004 8 8 5.5034 -2.4430 0.0005 9 8 3.6192 -3.6197 0.0014 10 6 4.4159 -4.8337 0.0019 11 1 5.3594 -4.6487 0.5153 12 6 3.6630 -5.9283 0.7132 13 1 2.6836 -5.7315 1.1236 14 6 4.2243 -7.1814 0.8393 15 7 5.4168 -7.4211 0.3392 16 14 3.2908 -8.5384 1.7205 17 1 1.9812 -8.0162 2.1869 18 1 3.0674 -9.6719 0.7873 19 1 4.0816 -9.0063 2.8871 20 6 4.6953 -5.2609 -1.4404 21 6 4.0495 -4.4397 -2.5582 22 6 5.5542 -4.3304 -2.2991 23 6 2.1275 -1.1723 -0.0050 24 8 1.5103 -2.2233 -0.0100 25 1 -0.3634 1.0276 -0.0005 26 1 -0.3633 -0.5139 -0.8900 27 1 -0.3633 -0.5139 0.8900 28 1 1.5723 2.1032 -0.0004 29 1 3.9978 2.1735 -0.0009 30 1 5.3052 0.0641 -0.0008 31 1 5.8117 -8.3027 0.4283 32 1 4.8010 -6.3339 -1.6008 33 1 3.7302 -4.9724 -3.4540 34 1 3.4259 -3.5949 -2.2661 35 1 5.9198 -3.4135 -1.8366 36 1 6.2248 -4.7911 -3.0244 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001347938748.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:17 Heat of formation + Delta-G solvation = -75.614554 kcal Electronic energy + Delta-G solvation = -21844.906738 eV Core-core repulsion = 18488.176409 eV Total energy + Delta-G solvation = -3356.730329 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.43275 -41.08148 -38.31860 -38.05651 -36.38410 -35.46549 -34.89521 -31.32067 -29.87289 -28.60063 -26.43482 -25.10570 -23.67916 -23.24505 -22.46931 -20.98219 -19.32848 -18.83048 -18.34084 -17.65817 -17.44847 -17.40621 -16.97493 -16.67391 -16.19687 -15.64925 -15.38677 -14.74859 -14.38825 -14.10310 -13.64395 -13.58476 -13.44695 -13.23722 -13.11290 -12.93192 -12.84226 -12.79718 -12.40659 -12.25474 -11.95542 -11.55957 -11.33884 -11.11820 -11.08038 -10.98960 -10.50097 -10.45679 -9.07589 -8.28588 -6.44519 -0.61062 0.87017 1.36064 1.38099 1.51759 1.54586 1.56561 2.15052 2.44403 2.69534 2.98053 3.11025 3.56595 3.79670 3.95526 4.02300 4.05286 4.18077 4.24541 4.26224 4.36040 4.43421 4.68912 4.77128 4.82845 4.90863 4.94200 4.95456 5.22245 5.25970 5.26620 5.50411 5.53403 5.54576 5.88027 5.96580 6.14529 6.59884 6.95566 7.05318 7.27201 8.79638 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.022076 B = 0.005566 C = 0.004961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.051056 B = 5029.698156 C = 5642.255844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.055 3.945 2 N -0.495 5.495 3 C 0.203 3.797 4 C -0.249 4.249 5 C 0.084 3.916 6 C -0.325 4.325 7 C 0.503 3.497 8 O -0.557 6.557 9 O -0.337 6.337 10 C 0.249 3.751 11 H 0.004 0.996 12 C -0.545 4.545 13 H 0.053 0.947 14 C 0.020 3.980 15 N -0.911 5.911 16 Si 0.981 3.019 17 H -0.271 1.271 18 H -0.267 1.267 19 H -0.269 1.269 20 C -0.141 4.141 21 C -0.171 4.171 22 C -0.190 4.190 23 C 0.512 3.488 24 O -0.563 6.563 25 H 0.153 0.847 26 H 0.071 0.929 27 H 0.070 0.930 28 H 0.243 0.757 29 H 0.206 0.794 30 H 0.149 0.851 31 H 0.271 0.729 32 H 0.104 0.896 33 H 0.105 0.895 34 H 0.072 0.928 35 H 0.085 0.915 36 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.803 23.676 -2.412 25.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 N -0.202 5.202 3 C 0.072 3.928 4 C -0.271 4.271 5 C 0.061 3.939 6 C -0.330 4.330 7 C 0.352 3.648 8 O -0.453 6.453 9 O -0.253 6.253 10 C 0.195 3.805 11 H 0.022 0.978 12 C -0.583 4.583 13 H 0.071 0.929 14 C -0.180 4.180 15 N -0.548 5.548 16 Si 0.803 3.197 17 H -0.196 1.196 18 H -0.191 1.191 19 H -0.194 1.194 20 C -0.160 4.160 21 C -0.208 4.208 22 C -0.227 4.227 23 C 0.313 3.687 24 O -0.445 6.445 25 H 0.171 0.829 26 H 0.090 0.910 27 H 0.089 0.911 28 H 0.259 0.741 29 H 0.223 0.777 30 H 0.167 0.833 31 H 0.080 0.920 32 H 0.122 0.878 33 H 0.123 0.877 34 H 0.091 0.909 35 H 0.103 0.897 36 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -8.828 22.755 -2.437 24.529 hybrid contribution 0.269 -1.440 0.442 1.530 sum -8.559 21.315 -1.995 23.056 Atomic orbital electron populations 1.22536 0.74452 1.07522 1.03993 1.45713 1.11150 1.06467 1.56841 1.23546 0.94554 0.89976 0.84750 1.21205 0.92842 0.99190 1.13817 1.22366 1.02117 0.90169 0.79288 1.20172 0.93225 0.92320 1.27297 1.21133 0.85868 0.85873 0.71958 1.90690 1.15606 1.88832 1.50155 1.86811 1.41573 1.15086 1.81783 1.19751 0.89856 0.78397 0.92464 0.97787 1.21213 1.04063 0.95689 1.37293 0.92897 1.25807 0.95982 1.00279 0.95953 1.70130 1.16214 1.23404 1.45083 0.85185 0.78360 0.77777 0.78347 1.19574 1.19141 1.19425 1.22686 1.03198 0.97943 0.92200 1.22790 0.94960 1.02831 1.00254 1.23128 0.93339 1.02322 1.03905 1.17063 0.88227 0.83951 0.79425 1.91022 1.69699 1.31308 1.52493 0.82882 0.90998 0.91134 0.74137 0.77721 0.83347 0.92014 0.87779 0.87676 0.90899 0.89670 0.88055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.67 10.04 127.77 1.28 1.95 16 2 N -0.49 -9.61 2.98 -673.14 -2.00 -11.61 16 3 C 0.20 1.57 10.28 83.57 0.86 2.43 16 4 C -0.25 -2.70 9.99 21.99 0.22 -2.48 16 5 C 0.08 2.06 9.70 22.84 0.22 2.28 16 6 C -0.32 -12.34 5.92 -19.80 -0.12 -12.46 16 7 C 0.50 25.66 6.73 70.09 0.47 26.13 16 8 O -0.56 -29.75 13.38 19.61 0.26 -29.49 16 9 O -0.34 -19.87 6.68 -50.49 -0.34 -20.21 16 10 C 0.25 15.61 2.39 29.85 0.07 15.69 16 11 H 0.00 0.31 7.16 -2.39 -0.02 0.29 16 12 C -0.55 -35.25 8.90 25.60 0.23 -35.02 16 13 H 0.05 3.50 7.81 -2.91 -0.02 3.48 16 14 C 0.02 1.19 5.16 84.66 0.44 1.63 16 15 N -0.91 -56.16 11.66 21.45 0.25 -55.91 16 16 Si 0.98 47.06 29.54 68.60 2.03 49.08 16 17 H -0.27 -12.96 7.11 99.48 0.71 -12.25 16 18 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 19 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 20 C -0.14 -8.07 5.23 -10.79 -0.06 -8.12 16 21 C -0.17 -8.33 9.74 30.62 0.30 -8.03 16 22 C -0.19 -9.32 9.87 30.62 0.30 -9.02 16 23 C 0.51 18.40 7.44 85.18 0.63 19.03 16 24 O -0.56 -26.74 15.20 15.59 0.24 -26.50 16 25 H 0.15 -0.13 7.69 -2.39 -0.02 -0.14 16 26 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 27 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 28 H 0.24 -1.63 7.79 -2.91 -0.02 -1.65 16 29 H 0.21 0.21 8.06 -2.91 -0.02 0.18 16 30 H 0.15 3.55 7.69 -2.91 -0.02 3.52 16 31 H 0.27 15.41 8.31 -92.70 -0.77 14.64 16 32 H 0.10 6.33 6.54 -2.39 -0.02 6.32 16 33 H 0.10 4.44 8.14 -2.39 -0.02 4.42 16 34 H 0.07 3.71 6.67 -2.39 -0.02 3.69 16 35 H 0.08 4.36 5.55 -2.38 -0.01 4.35 16 36 H 0.10 4.39 8.14 -2.39 -0.02 4.37 16 Total: -1.00 -96.55 307.99 6.39 -90.16 By element: Atomic # 1 Polarization: 9.36 SS G_CDS: 1.10 Total: 10.46 kcal Atomic # 6 Polarization: -10.84 SS G_CDS: 4.85 Total: -5.99 kcal Atomic # 7 Polarization: -65.77 SS G_CDS: -1.75 Total: -67.52 kcal Atomic # 8 Polarization: -76.35 SS G_CDS: 0.16 Total: -76.19 kcal Atomic # 14 Polarization: 47.06 SS G_CDS: 2.03 Total: 49.08 kcal Total: -96.55 6.39 -90.16 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347938748.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.547 kcal (2) G-P(sol) polarization free energy of solvation -96.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds