Wall clock time and date at job start Mon Mar 30 2020 01:40:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.47357 * 2 1 4 4 C 1.52999 * 109.47158 * 240.00144 * 2 1 3 5 5 N 1.46900 * 109.46965 * 174.80020 * 4 2 1 6 6 C 1.47899 * 110.99684 * 293.85547 * 5 4 2 7 7 C 1.53991 * 107.05886 * 214.16031 * 6 5 4 8 8 C 1.54597 * 105.14108 * 1.22593 * 7 6 5 9 9 O 1.42901 * 110.72587 * 263.42454 * 8 7 6 10 10 C 1.50700 * 110.72289 * 140.31729 * 8 7 6 11 11 H 1.08007 * 119.99571 * 241.45182 * 10 8 7 12 12 C 1.37872 * 120.00089 * 61.45527 * 10 8 7 13 13 N 1.31507 * 120.00229 * 0.02562 * 12 10 8 14 14 Si 1.86802 * 119.99827 * 179.97438 * 12 10 8 15 15 H 1.48495 * 109.47197 * 90.00221 * 14 12 10 16 16 H 1.48498 * 109.47208 * 210.00236 * 14 12 10 17 17 H 1.48505 * 109.47253 * 330.00000 * 14 12 10 18 18 C 1.48537 * 110.99663 * 176.46605 * 5 4 2 19 19 S 1.81407 * 109.46982 * 119.99952 * 2 1 3 20 20 C 1.81399 * 101.91956 * 299.78840 * 19 2 1 21 21 O 1.42099 * 108.57514 * 54.27372 * 19 2 1 22 22 O 1.42094 * 108.57430 * 185.29989 * 19 2 1 23 23 H 1.09002 * 109.47016 * 300.00139 * 1 2 3 24 24 H 1.09000 * 109.46778 * 59.99627 * 1 2 3 25 25 H 1.08997 * 109.46836 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47058 * 54.79395 * 4 2 1 27 27 H 1.09005 * 109.46983 * 294.79439 * 4 2 1 28 28 H 1.08999 * 109.92151 * 333.51394 * 6 5 4 29 29 H 1.08997 * 109.91482 * 94.80813 * 6 5 4 30 30 H 1.09003 * 110.31018 * 120.14510 * 7 6 5 31 31 H 1.09001 * 110.31069 * 242.21390 * 7 6 5 32 32 H 0.96701 * 113.99786 * 298.54033 * 9 8 7 33 33 H 0.97004 * 120.00150 * 179.97438 * 13 12 10 34 34 H 1.09006 * 110.66536 * 278.14883 * 18 5 4 35 35 H 1.08996 * 110.66941 * 41.28270 * 18 5 4 36 36 H 1.08991 * 109.47471 * 59.99970 * 20 19 2 37 37 H 1.09003 * 109.46806 * 180.02562 * 20 19 2 38 38 H 1.09002 * 109.47254 * 299.99641 * 20 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7212 -1.2492 5 7 3.5037 -0.6134 -1.3136 6 6 3.9230 0.7892 -1.5237 7 6 5.1910 0.7557 -2.3968 8 6 5.4399 -0.7417 -2.6900 9 8 6.3950 -1.2841 -1.7758 10 6 5.8956 -0.9379 -4.1130 11 1 5.3030 -1.5323 -4.7927 12 6 7.0691 -0.3588 -4.5471 13 7 7.7910 0.3645 -3.7194 14 14 7.6343 -0.6026 -6.3108 15 1 7.0765 0.4778 -7.1632 16 1 9.1176 -0.5603 -6.3656 17 1 7.1580 -1.9193 -6.8057 18 6 4.0431 -1.3747 -2.4694 19 16 2.1347 -0.8552 1.4812 20 6 1.4282 0.1553 2.8118 21 8 1.5440 -2.1466 1.5311 22 8 3.5500 -0.7373 1.5258 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.6026 -0.2640 -2.1368 27 1 1.7548 -1.7723 -1.2039 28 1 3.1341 1.3400 -2.0358 29 1 4.1447 1.2580 -0.5650 30 1 5.0250 1.3006 -3.3261 31 1 6.0351 1.1819 -1.8547 32 1 7.2658 -0.8663 -1.8228 33 1 8.6168 0.7716 -4.0247 34 1 4.1347 -2.4329 -2.2240 35 1 3.4145 -1.2356 -3.3488 36 1 0.3413 0.1541 2.7310 37 1 1.7217 -0.2581 3.7768 38 1 1.7977 1.1773 2.7273 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001349108736.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:03 Heat of formation + Delta-G solvation = -111.265984 kcal Electronic energy + Delta-G solvation = -21026.401842 eV Core-core repulsion = 17803.569502 eV Total energy + Delta-G solvation = -3222.832340 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -38.54807 -36.72613 -35.70964 -35.53019 -33.37062 -32.05041 -30.05055 -29.03429 -28.00973 -25.78623 -23.91427 -22.41698 -20.17533 -19.46008 -18.41587 -16.98961 -16.89108 -15.94581 -15.75112 -15.13796 -15.00933 -14.68965 -14.14266 -13.71655 -13.43981 -13.34298 -13.14085 -12.82299 -12.79251 -12.28887 -11.96906 -11.74034 -11.67418 -11.65238 -11.52535 -11.24002 -11.03515 -10.88877 -10.78479 -10.56141 -10.41726 -10.30478 -10.07764 -9.71680 -9.10153 -8.54688 -8.01839 -7.75715 -6.16223 -4.24729 0.14740 2.93119 3.23835 3.31641 3.35487 3.84656 4.04662 4.27397 4.37031 4.58461 4.72132 4.77551 5.04341 5.09473 5.13022 5.31329 5.42341 5.54151 5.65610 5.70201 5.78561 5.86516 5.98186 6.06049 6.19397 6.48399 6.64247 6.93400 7.08086 7.41196 7.54772 7.56676 7.62899 7.86612 8.23503 8.77649 9.44259 9.66561 10.90698 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.038740 B = 0.004780 C = 0.004634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.591761 B = 5856.561850 C = 6040.573325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.569 4.569 3 H 0.134 0.866 4 C 0.058 3.942 5 N -0.514 5.514 6 C 0.033 3.967 7 C -0.128 4.128 8 C 0.257 3.743 9 O -0.576 6.576 10 C -0.538 4.538 11 H 0.060 0.940 12 C 0.071 3.929 13 N -0.893 5.893 14 Si 0.899 3.101 15 H -0.281 1.281 16 H -0.285 1.285 17 H -0.273 1.273 18 C 0.052 3.948 19 S 2.430 3.570 20 C -0.672 4.672 21 O -0.945 6.945 22 O -0.898 6.898 23 H 0.066 0.934 24 H 0.076 0.924 25 H 0.076 0.924 26 H 0.054 0.946 27 H 0.085 0.915 28 H 0.029 0.971 29 H 0.067 0.933 30 H 0.060 0.940 31 H 0.068 0.932 32 H 0.376 0.624 33 H 0.266 0.734 34 H 0.076 0.924 35 H 0.048 0.952 36 H 0.123 0.877 37 H 0.125 0.875 38 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.252 3.596 8.711 17.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.678 4.678 3 H 0.152 0.848 4 C -0.072 4.072 5 N -0.238 5.238 6 C -0.094 4.094 7 C -0.167 4.167 8 C 0.217 3.783 9 O -0.383 6.383 10 C -0.577 4.577 11 H 0.078 0.922 12 C -0.131 4.131 13 N -0.533 5.533 14 Si 0.726 3.274 15 H -0.207 1.207 16 H -0.211 1.211 17 H -0.198 1.198 18 C -0.074 4.074 19 S 2.608 3.392 20 C -0.819 4.819 21 O -0.942 6.942 22 O -0.895 6.895 23 H 0.085 0.915 24 H 0.095 0.905 25 H 0.095 0.905 26 H 0.072 0.928 27 H 0.103 0.897 28 H 0.047 0.953 29 H 0.086 0.914 30 H 0.078 0.922 31 H 0.087 0.913 32 H 0.226 0.774 33 H 0.076 0.924 34 H 0.094 0.906 35 H 0.066 0.934 36 H 0.141 0.859 37 H 0.143 0.857 38 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -13.877 2.377 9.457 16.961 hybrid contribution -0.089 1.606 -1.930 2.513 sum -13.966 3.983 7.527 16.358 Atomic orbital electron populations 1.21672 0.90589 1.04028 1.03793 1.30145 1.05475 1.13795 1.18421 0.84807 1.22037 0.91032 1.00098 0.94011 1.64914 1.06018 1.09976 1.42937 1.22977 0.98008 0.88829 0.99599 1.22921 0.94867 1.01284 0.97630 1.19294 0.84548 0.87023 0.87447 1.86178 1.24877 1.64774 1.62483 1.21615 1.07639 1.32271 0.96138 0.92165 1.24992 0.96162 0.94056 0.97908 1.69742 1.14960 1.33252 1.35303 0.86493 0.77850 0.78609 0.84405 1.20692 1.21058 1.19791 1.23209 0.96358 0.98411 0.89465 1.07980 0.76446 0.76889 0.77872 1.30490 1.13699 1.17078 1.20654 1.93545 1.79875 1.34794 1.85991 1.93675 1.25134 1.86079 1.84607 0.91521 0.90524 0.90461 0.92829 0.89663 0.95270 0.91447 0.92152 0.91309 0.77437 0.92391 0.90581 0.93409 0.85861 0.85665 0.85640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.15 8.94 37.16 0.33 -0.82 16 2 C -0.57 -6.52 2.73 -26.73 -0.07 -6.59 16 3 H 0.13 1.34 7.20 -51.92 -0.37 0.97 16 4 C 0.06 0.88 4.12 -3.82 -0.02 0.86 16 5 N -0.51 -10.18 4.25 -230.45 -0.98 -11.16 16 6 C 0.03 0.65 5.54 -2.76 -0.02 0.64 16 7 C -0.13 -3.01 5.26 -25.37 -0.13 -3.14 16 8 C 0.26 6.59 0.95 -89.91 -0.09 6.50 16 9 O -0.58 -15.93 13.10 -35.23 -0.46 -16.39 16 10 C -0.54 -14.59 8.14 -34.44 -0.28 -14.87 16 11 H 0.06 1.61 7.78 -52.48 -0.41 1.20 16 12 C 0.07 1.90 5.28 -17.82 -0.09 1.81 16 13 N -0.89 -24.20 11.00 55.43 0.61 -23.59 16 14 Si 0.90 20.78 29.54 -169.99 -5.02 15.76 16 15 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 16 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 17 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 18 C 0.05 1.17 5.70 -1.90 -0.01 1.16 16 19 S 2.43 31.84 4.81 -107.50 -0.52 31.32 16 20 C -0.67 -5.32 10.18 101.05 1.03 -4.29 16 21 O -0.94 -15.02 17.90 -57.83 -1.04 -16.05 16 22 O -0.90 -16.36 17.19 -57.83 -0.99 -17.35 16 23 H 0.07 0.35 6.56 -51.93 -0.34 0.01 16 24 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 25 H 0.08 0.63 8.05 -51.93 -0.42 0.22 16 26 H 0.05 0.75 7.92 -51.93 -0.41 0.34 16 27 H 0.09 1.26 8.14 -51.93 -0.42 0.83 16 28 H 0.03 0.50 7.63 -51.93 -0.40 0.10 16 29 H 0.07 1.25 8.10 -51.93 -0.42 0.83 16 30 H 0.06 1.45 7.84 -51.93 -0.41 1.04 16 31 H 0.07 1.71 7.99 -51.93 -0.41 1.29 16 32 H 0.38 10.42 7.46 45.56 0.34 10.76 16 33 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 34 H 0.08 1.73 8.14 -51.93 -0.42 1.31 16 35 H 0.05 1.00 7.92 -51.93 -0.41 0.58 16 36 H 0.12 0.68 6.88 -51.93 -0.36 0.32 16 37 H 0.12 0.91 8.14 -51.92 -0.42 0.49 16 38 H 0.12 0.78 8.14 -51.92 -0.42 0.36 16 LS Contribution 316.29 15.07 4.77 4.77 Total: -1.00 -33.91 316.29 -8.25 -42.16 By element: Atomic # 1 Polarization: 14.55 SS G_CDS: -5.27 Total: 9.28 kcal Atomic # 6 Polarization: -19.40 SS G_CDS: 0.65 Total: -18.75 kcal Atomic # 7 Polarization: -34.38 SS G_CDS: -0.37 Total: -34.74 kcal Atomic # 8 Polarization: -47.31 SS G_CDS: -2.49 Total: -49.80 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Atomic # 16 Polarization: 31.84 SS G_CDS: -0.52 Total: 31.32 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -33.91 -8.25 -42.16 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349108736.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.110 kcal (2) G-P(sol) polarization free energy of solvation -33.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds