Wall clock time and date at job start Mon Mar 30 2020 01:40:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.47357 * 2 1 4 4 C 1.52999 * 109.47158 * 240.00144 * 2 1 3 5 5 N 1.46900 * 109.46965 * 174.80020 * 4 2 1 6 6 C 1.47899 * 110.99684 * 293.85547 * 5 4 2 7 7 C 1.53991 * 107.05886 * 214.16031 * 6 5 4 8 8 C 1.54597 * 105.14108 * 1.22593 * 7 6 5 9 9 O 1.42901 * 110.72587 * 263.42454 * 8 7 6 10 10 C 1.50700 * 110.72289 * 140.31729 * 8 7 6 11 11 H 1.08007 * 119.99571 * 241.45182 * 10 8 7 12 12 C 1.37872 * 120.00089 * 61.45527 * 10 8 7 13 13 N 1.31507 * 120.00229 * 0.02562 * 12 10 8 14 14 Si 1.86802 * 119.99827 * 179.97438 * 12 10 8 15 15 H 1.48495 * 109.47197 * 90.00221 * 14 12 10 16 16 H 1.48498 * 109.47208 * 210.00236 * 14 12 10 17 17 H 1.48505 * 109.47253 * 330.00000 * 14 12 10 18 18 C 1.48537 * 110.99663 * 176.46605 * 5 4 2 19 19 S 1.81407 * 109.46982 * 119.99952 * 2 1 3 20 20 C 1.81399 * 101.91956 * 299.78840 * 19 2 1 21 21 O 1.42099 * 108.57514 * 54.27372 * 19 2 1 22 22 O 1.42094 * 108.57430 * 185.29989 * 19 2 1 23 23 H 1.09002 * 109.47016 * 300.00139 * 1 2 3 24 24 H 1.09000 * 109.46778 * 59.99627 * 1 2 3 25 25 H 1.08997 * 109.46836 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47058 * 54.79395 * 4 2 1 27 27 H 1.09005 * 109.46983 * 294.79439 * 4 2 1 28 28 H 1.08999 * 109.92151 * 333.51394 * 6 5 4 29 29 H 1.08997 * 109.91482 * 94.80813 * 6 5 4 30 30 H 1.09003 * 110.31018 * 120.14510 * 7 6 5 31 31 H 1.09001 * 110.31069 * 242.21390 * 7 6 5 32 32 H 0.96701 * 113.99786 * 298.54033 * 9 8 7 33 33 H 0.97004 * 120.00150 * 179.97438 * 13 12 10 34 34 H 1.09006 * 110.66536 * 278.14883 * 18 5 4 35 35 H 1.08996 * 110.66941 * 41.28270 * 18 5 4 36 36 H 1.08991 * 109.47471 * 59.99970 * 20 19 2 37 37 H 1.09003 * 109.46806 * 180.02562 * 20 19 2 38 38 H 1.09002 * 109.47254 * 299.99641 * 20 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7212 -1.2492 5 7 3.5037 -0.6134 -1.3136 6 6 3.9230 0.7892 -1.5237 7 6 5.1910 0.7557 -2.3968 8 6 5.4399 -0.7417 -2.6900 9 8 6.3950 -1.2841 -1.7758 10 6 5.8956 -0.9379 -4.1130 11 1 5.3030 -1.5323 -4.7927 12 6 7.0691 -0.3588 -4.5471 13 7 7.7910 0.3645 -3.7194 14 14 7.6343 -0.6026 -6.3108 15 1 7.0765 0.4778 -7.1632 16 1 9.1176 -0.5603 -6.3656 17 1 7.1580 -1.9193 -6.8057 18 6 4.0431 -1.3747 -2.4694 19 16 2.1347 -0.8552 1.4812 20 6 1.4282 0.1553 2.8118 21 8 1.5440 -2.1466 1.5311 22 8 3.5500 -0.7373 1.5258 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.6026 -0.2640 -2.1368 27 1 1.7548 -1.7723 -1.2039 28 1 3.1341 1.3400 -2.0358 29 1 4.1447 1.2580 -0.5650 30 1 5.0250 1.3006 -3.3261 31 1 6.0351 1.1819 -1.8547 32 1 7.2658 -0.8663 -1.8228 33 1 8.6168 0.7716 -4.0247 34 1 4.1347 -2.4329 -2.2240 35 1 3.4145 -1.2356 -3.3488 36 1 0.3413 0.1541 2.7310 37 1 1.7217 -0.2581 3.7768 38 1 1.7977 1.1773 2.7273 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001349108736.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:03 Heat of formation + Delta-G solvation = -140.457459 kcal Electronic energy + Delta-G solvation = -21027.667679 eV Core-core repulsion = 17803.569502 eV Total energy + Delta-G solvation = -3224.098177 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.19409 -37.82035 -37.20094 -36.75413 -34.72396 -34.15670 -31.34549 -30.04876 -29.79856 -27.26686 -25.51375 -23.53032 -21.72819 -21.34906 -19.45203 -18.99161 -17.93083 -17.12605 -16.95933 -16.90463 -16.45437 -16.15583 -15.74646 -15.13579 -14.81942 -14.37918 -14.12618 -13.91899 -13.85411 -13.75724 -13.30107 -13.13108 -13.03238 -12.90145 -12.85901 -12.77207 -12.66975 -12.52942 -12.27301 -12.15853 -12.01708 -11.74515 -11.59434 -11.06810 -10.97024 -10.58955 -10.06838 -9.26382 -8.20133 -6.36886 -0.77879 1.39748 1.42518 1.52240 2.03821 2.38364 2.91059 2.98150 3.05574 3.30018 3.60844 3.84747 3.99438 4.09265 4.13544 4.19892 4.30364 4.34865 4.44952 4.52940 4.65385 4.75460 4.76309 4.86142 4.91689 5.00750 5.11127 5.24045 5.29403 5.48610 5.58384 5.76281 5.88991 6.11851 6.27731 6.69404 7.35177 7.50956 8.85510 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.038740 B = 0.004780 C = 0.004634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.591761 B = 5856.561850 C = 6040.573325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.555 4.555 3 H 0.154 0.846 4 C 0.048 3.952 5 N -0.530 5.530 6 C 0.042 3.958 7 C -0.120 4.120 8 C 0.235 3.765 9 O -0.591 6.591 10 C -0.563 4.563 11 H 0.055 0.945 12 C 0.030 3.970 13 N -0.912 5.912 14 Si 0.962 3.038 15 H -0.272 1.272 16 H -0.282 1.282 17 H -0.273 1.273 18 C 0.058 3.942 19 S 2.407 3.593 20 C -0.642 4.642 21 O -0.989 6.989 22 O -0.968 6.968 23 H 0.104 0.896 24 H 0.089 0.911 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.080 0.920 28 H 0.061 0.939 29 H 0.077 0.923 30 H 0.048 0.952 31 H 0.045 0.955 32 H 0.370 0.630 33 H 0.269 0.731 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.159 0.841 37 H 0.135 0.865 38 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.805 5.364 9.018 19.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.666 4.666 3 H 0.172 0.828 4 C -0.081 4.081 5 N -0.254 5.254 6 C -0.086 4.086 7 C -0.159 4.159 8 C 0.195 3.805 9 O -0.398 6.398 10 C -0.602 4.602 11 H 0.074 0.926 12 C -0.171 4.171 13 N -0.551 5.551 14 Si 0.787 3.213 15 H -0.197 1.197 16 H -0.207 1.207 17 H -0.198 1.198 18 C -0.070 4.070 19 S 2.593 3.407 20 C -0.794 4.794 21 O -0.986 6.986 22 O -0.965 6.965 23 H 0.123 0.877 24 H 0.108 0.892 25 H 0.091 0.909 26 H 0.090 0.910 27 H 0.099 0.901 28 H 0.079 0.921 29 H 0.095 0.905 30 H 0.067 0.933 31 H 0.063 0.937 32 H 0.218 0.782 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.177 0.823 37 H 0.153 0.847 38 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -16.424 4.106 9.749 19.536 hybrid contribution 0.639 1.090 -1.966 2.337 sum -15.785 5.196 7.783 18.350 Atomic orbital electron populations 1.21814 0.87463 1.04634 1.06384 1.30006 1.07919 1.13636 1.15040 0.82783 1.22208 0.88100 1.00936 0.96830 1.64823 1.09383 1.09644 1.41587 1.22901 0.96855 0.89278 0.99531 1.22706 0.96230 0.99436 0.97554 1.19645 0.85429 0.88764 0.86616 1.86177 1.24984 1.65354 1.63329 1.21881 1.08424 1.32811 0.97041 0.92641 1.25715 0.96100 0.93638 1.01664 1.69841 1.15071 1.33403 1.36773 0.85510 0.77342 0.78547 0.79886 1.19712 1.20721 1.19814 1.23042 0.95121 0.97736 0.91078 1.08084 0.75456 0.77402 0.79766 1.30184 1.15470 1.16565 1.17198 1.93488 1.79881 1.38264 1.86982 1.93606 1.29515 1.87233 1.86108 0.87745 0.89185 0.90942 0.91027 0.90128 0.92096 0.90484 0.93292 0.93657 0.78179 0.92219 0.92191 0.92226 0.82302 0.84658 0.82977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.71 8.94 71.98 0.64 -1.06 16 2 C -0.56 -11.07 2.73 30.60 0.08 -10.99 16 3 H 0.15 2.46 7.20 -2.39 -0.02 2.44 16 4 C 0.05 1.38 4.12 86.30 0.36 1.74 16 5 N -0.53 -20.86 4.25 -883.01 -3.75 -24.61 16 6 C 0.04 1.58 5.54 86.45 0.48 2.06 16 7 C -0.12 -5.75 5.26 31.47 0.17 -5.59 16 8 C 0.24 12.40 0.95 -10.33 -0.01 12.39 16 9 O -0.59 -34.23 13.10 -148.98 -1.95 -36.18 16 10 C -0.56 -31.21 8.14 25.60 0.21 -31.00 16 11 H 0.06 3.03 7.78 -2.91 -0.02 3.01 16 12 C 0.03 1.59 5.28 84.65 0.45 2.04 16 13 N -0.91 -50.37 11.00 21.44 0.24 -50.13 16 14 Si 0.96 42.88 29.54 68.60 2.03 44.91 16 15 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 16 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 17 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 18 C 0.06 2.63 5.70 86.65 0.49 3.12 16 19 S 2.41 60.16 4.81 -56.49 -0.27 59.89 16 20 C -0.64 -7.29 10.18 113.37 1.15 -6.14 16 21 O -0.99 -31.46 17.90 -127.37 -2.28 -33.74 16 22 O -0.97 -35.97 17.19 -127.37 -2.19 -38.16 16 23 H 0.10 0.46 6.56 -2.39 -0.02 0.45 16 24 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 25 H 0.07 0.96 8.05 -2.39 -0.02 0.94 16 26 H 0.07 1.80 7.92 -2.39 -0.02 1.78 16 27 H 0.08 2.36 8.14 -2.38 -0.02 2.34 16 28 H 0.06 1.91 7.63 -2.39 -0.02 1.89 16 29 H 0.08 2.77 8.10 -2.39 -0.02 2.75 16 30 H 0.05 2.38 7.84 -2.39 -0.02 2.36 16 31 H 0.04 2.32 7.99 -2.39 -0.02 2.30 16 32 H 0.37 21.58 7.46 -74.06 -0.55 21.03 16 33 H 0.27 14.07 8.31 -92.71 -0.77 13.30 16 34 H 0.06 2.85 8.14 -2.38 -0.02 2.83 16 35 H 0.06 2.50 7.92 -2.39 -0.02 2.48 16 36 H 0.16 0.75 6.88 -2.40 -0.02 0.74 16 37 H 0.13 1.44 8.14 -2.39 -0.02 1.42 16 38 H 0.15 1.06 8.14 -2.39 -0.02 1.04 16 Total: -1.00 -77.78 316.29 -3.66 -81.44 By element: Atomic # 1 Polarization: 29.50 SS G_CDS: 0.50 Total: 30.00 kcal Atomic # 6 Polarization: -37.45 SS G_CDS: 4.02 Total: -33.43 kcal Atomic # 7 Polarization: -71.23 SS G_CDS: -3.51 Total: -74.74 kcal Atomic # 8 Polarization: -101.65 SS G_CDS: -6.42 Total: -108.07 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.91 kcal Atomic # 16 Polarization: 60.16 SS G_CDS: -0.27 Total: 59.89 kcal Total: -77.78 -3.66 -81.44 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349108736.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.015 kcal (2) G-P(sol) polarization free energy of solvation -77.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds