Wall clock time and date at job start Mon Mar 30 2020 01:40:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.46967 * 2 1 4 4 C 1.52995 * 109.47570 * 239.99821 * 2 1 3 5 5 N 1.46897 * 109.47492 * 179.97438 * 4 2 1 6 6 C 1.48538 * 111.00123 * 287.39971 * 5 4 2 7 7 C 1.54933 * 103.22579 * 200.28130 * 6 5 4 8 8 C 1.54593 * 102.92591 * 37.41127 * 7 6 5 9 9 O 1.42904 * 110.31066 * 96.95983 * 8 7 6 10 10 C 1.50700 * 110.31084 * 219.12964 * 8 7 6 11 11 H 1.08000 * 120.00330 * 115.71577 * 10 8 7 12 12 C 1.37886 * 119.99791 * 295.71403 * 10 8 7 13 13 N 1.31511 * 120.00026 * 0.02562 * 12 10 8 14 14 Si 1.86799 * 119.99683 * 179.97438 * 12 10 8 15 15 H 1.48500 * 109.47361 * 359.97438 * 14 12 10 16 16 H 1.48501 * 109.47009 * 120.00547 * 14 12 10 17 17 H 1.48509 * 109.46917 * 239.99845 * 14 12 10 18 18 C 1.47899 * 111.00068 * 170.00129 * 5 4 2 19 19 S 1.81407 * 109.47374 * 119.99621 * 2 1 3 20 20 C 1.81397 * 101.92142 * 305.00420 * 19 2 1 21 21 O 1.42099 * 108.57255 * 59.49057 * 19 2 1 22 22 O 1.42096 * 108.58195 * 190.51443 * 19 2 1 23 23 H 1.08998 * 109.46929 * 299.99646 * 1 2 3 24 24 H 1.08998 * 109.47268 * 60.00473 * 1 2 3 25 25 H 1.09003 * 109.46627 * 180.02562 * 1 2 3 26 26 H 1.09008 * 109.46983 * 59.99503 * 4 2 1 27 27 H 1.09000 * 109.47121 * 300.00084 * 4 2 1 28 28 H 1.09007 * 110.66246 * 318.71191 * 6 5 4 29 29 H 1.08993 * 110.66698 * 81.83885 * 6 5 4 30 30 H 1.09007 * 110.72333 * 279.05054 * 7 6 5 31 31 H 1.09004 * 110.72411 * 155.77248 * 7 6 5 32 32 H 0.96700 * 113.99325 * 64.28344 * 9 8 7 33 33 H 0.96995 * 119.99911 * 180.02562 * 13 12 10 34 34 H 1.09004 * 109.91646 * 26.49394 * 18 5 4 35 35 H 1.08998 * 109.92144 * 265.19786 * 18 5 4 36 36 H 1.09001 * 109.47205 * 59.99774 * 20 19 2 37 37 H 1.08997 * 109.47322 * 179.97438 * 20 19 2 38 38 H 1.09000 * 109.47351 * 299.99613 * 20 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2491 5 7 3.5090 -0.7207 -1.2494 6 6 4.0408 0.6328 -1.5523 7 6 5.4886 0.3473 -2.0243 8 6 5.3381 -0.9651 -2.8274 9 8 5.2268 -0.6821 -4.2237 10 6 6.5119 -1.8741 -2.5688 11 1 6.3609 -2.8252 -2.0798 12 6 7.7786 -1.4917 -2.9565 13 7 7.9625 -0.3334 -3.5515 14 14 9.2336 -2.6182 -2.6353 15 1 8.7637 -3.8523 -1.9561 16 1 9.8764 -2.9765 -3.9251 17 1 10.2177 -1.9209 -1.7688 18 6 4.0392 -1.6082 -2.3071 19 16 2.1347 -0.8550 1.4812 20 6 1.2998 0.0577 2.8079 21 8 1.6409 -2.1874 1.4680 22 8 3.5342 -0.6349 1.5915 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.6767 -0.2075 -2.1392 27 1 1.6768 -1.7489 -1.2491 28 1 3.4629 1.1041 -2.3473 29 1 4.0435 1.2542 -0.6569 30 1 6.1513 0.2034 -1.1708 31 1 5.8514 1.1517 -2.6643 32 1 6.0161 -0.2756 -4.6067 33 1 8.8536 -0.0645 -3.8246 34 1 3.3159 -1.6925 -3.1182 35 1 4.2528 -2.5934 -1.8927 36 1 0.2202 -0.0209 2.6795 37 1 1.5822 -0.3639 3.7726 38 1 1.5949 1.1063 2.7691 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001349108739.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:08 Heat of formation + Delta-G solvation = -112.361991 kcal Electronic energy + Delta-G solvation = -21062.105853 eV Core-core repulsion = 17839.225986 eV Total energy + Delta-G solvation = -3222.879866 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -38.56620 -36.71947 -35.72786 -35.57236 -33.48682 -32.00634 -30.09422 -28.98930 -28.02803 -25.71090 -23.89460 -22.35325 -20.38384 -19.36612 -18.44406 -17.06184 -16.85441 -16.04203 -15.85335 -15.14913 -14.87310 -14.61193 -14.11859 -13.77337 -13.57037 -13.32821 -13.07922 -12.94180 -12.72240 -12.07165 -11.98575 -11.73124 -11.71571 -11.67241 -11.65565 -11.21021 -10.94733 -10.87506 -10.74725 -10.54697 -10.36439 -10.24471 -10.09169 -9.85504 -9.10334 -8.52304 -8.05735 -7.87621 -6.13287 -4.18108 0.14621 2.94106 3.29523 3.37560 3.43965 3.86250 4.03363 4.27526 4.40688 4.58970 4.70596 4.75348 5.03946 5.07931 5.15405 5.30551 5.42590 5.53329 5.64379 5.71401 5.79554 5.85970 6.05136 6.13977 6.26876 6.42287 6.52984 6.97756 7.08841 7.31496 7.54133 7.65033 7.70520 7.90961 8.22622 8.83774 9.47885 9.57694 10.94782 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.027962 B = 0.005376 C = 0.004945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.126571 B = 5207.344872 C = 5660.942724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.567 4.567 3 H 0.134 0.866 4 C 0.058 3.942 5 N -0.520 5.520 6 C 0.031 3.969 7 C -0.118 4.118 8 C 0.243 3.757 9 O -0.596 6.596 10 C -0.524 4.524 11 H 0.064 0.936 12 C 0.067 3.933 13 N -0.902 5.902 14 Si 0.901 3.099 15 H -0.271 1.271 16 H -0.284 1.284 17 H -0.283 1.283 18 C 0.055 3.945 19 S 2.434 3.566 20 C -0.674 4.674 21 O -0.942 6.942 22 O -0.903 6.903 23 H 0.067 0.933 24 H 0.076 0.924 25 H 0.076 0.924 26 H 0.056 0.944 27 H 0.086 0.914 28 H 0.035 0.965 29 H 0.067 0.933 30 H 0.072 0.928 31 H 0.064 0.936 32 H 0.384 0.616 33 H 0.265 0.735 34 H 0.039 0.961 35 H 0.083 0.917 36 H 0.123 0.877 37 H 0.125 0.875 38 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.580 4.560 8.547 17.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.676 4.676 3 H 0.152 0.848 4 C -0.072 4.072 5 N -0.245 5.245 6 C -0.096 4.096 7 C -0.156 4.156 8 C 0.203 3.797 9 O -0.406 6.406 10 C -0.563 4.563 11 H 0.082 0.918 12 C -0.134 4.134 13 N -0.543 5.543 14 Si 0.728 3.272 15 H -0.196 1.196 16 H -0.210 1.210 17 H -0.209 1.209 18 C -0.072 4.072 19 S 2.612 3.388 20 C -0.821 4.821 21 O -0.940 6.940 22 O -0.900 6.900 23 H 0.086 0.914 24 H 0.095 0.905 25 H 0.095 0.905 26 H 0.074 0.926 27 H 0.105 0.895 28 H 0.053 0.947 29 H 0.086 0.914 30 H 0.090 0.910 31 H 0.083 0.917 32 H 0.235 0.765 33 H 0.075 0.925 34 H 0.057 0.943 35 H 0.101 0.899 36 H 0.142 0.858 37 H 0.143 0.857 38 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -14.299 3.522 9.151 17.338 hybrid contribution 0.539 0.870 -0.698 1.238 sum -13.760 4.391 8.453 16.736 Atomic orbital electron populations 1.21697 0.90641 1.03989 1.03907 1.30112 1.05401 1.13710 1.18423 0.84838 1.22038 0.90876 1.00283 0.93987 1.64876 1.04130 1.08816 1.46678 1.23345 0.98271 0.89765 0.98230 1.22987 0.92384 0.99655 1.00611 1.19343 0.90608 0.90694 0.79048 1.86070 1.44626 1.84767 1.25130 1.21750 0.91753 1.04440 1.38318 0.91786 1.25007 0.99013 0.95099 0.94292 1.69624 1.22987 1.20406 1.41265 0.86395 0.82003 0.80907 0.77852 1.19584 1.21013 1.20908 1.22865 0.96625 0.96803 0.90927 1.07876 0.76430 0.76763 0.77758 1.30524 1.14931 1.15992 1.20661 1.93544 1.82422 1.31991 1.86013 1.93644 1.26140 1.85736 1.84481 0.91396 0.90461 0.90540 0.92635 0.89515 0.94711 0.91435 0.90953 0.91698 0.76451 0.92477 0.94254 0.89889 0.85787 0.85671 0.85669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.14 8.90 37.16 0.33 -0.81 16 2 C -0.57 -6.45 2.81 -26.73 -0.08 -6.52 16 3 H 0.13 1.31 7.37 -51.92 -0.38 0.93 16 4 C 0.06 0.88 4.14 -3.83 -0.02 0.87 16 5 N -0.52 -10.29 4.10 -230.45 -0.94 -11.23 16 6 C 0.03 0.62 5.91 -1.90 -0.01 0.60 16 7 C -0.12 -2.82 5.49 -24.87 -0.14 -2.95 16 8 C 0.24 6.23 0.99 -90.41 -0.09 6.14 16 9 O -0.60 -15.76 12.93 -35.23 -0.46 -16.21 16 10 C -0.52 -14.62 8.10 -34.44 -0.28 -14.90 16 11 H 0.06 1.80 7.34 -52.49 -0.39 1.41 16 12 C 0.07 1.83 5.26 -17.82 -0.09 1.74 16 13 N -0.90 -24.64 10.88 55.43 0.60 -24.04 16 14 Si 0.90 21.48 29.54 -169.99 -5.02 16.46 16 15 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 16 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 17 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 18 C 0.05 1.24 6.13 -2.75 -0.02 1.22 16 19 S 2.43 31.93 4.69 -107.50 -0.50 31.42 16 20 C -0.67 -5.26 10.01 101.05 1.01 -4.25 16 21 O -0.94 -15.21 18.06 -57.83 -1.04 -16.25 16 22 O -0.90 -16.19 17.26 -57.83 -1.00 -17.19 16 23 H 0.07 0.34 6.39 -51.93 -0.33 0.01 16 24 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.06 0.80 7.83 -51.92 -0.41 0.39 16 27 H 0.09 1.28 8.08 -51.93 -0.42 0.86 16 28 H 0.03 0.65 7.81 -51.93 -0.41 0.24 16 29 H 0.07 1.19 7.80 -51.93 -0.41 0.79 16 30 H 0.07 1.87 7.86 -51.92 -0.41 1.47 16 31 H 0.06 1.58 8.05 -51.93 -0.42 1.16 16 32 H 0.38 10.32 7.05 45.56 0.32 10.64 16 33 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 34 H 0.04 0.85 7.59 -51.93 -0.39 0.46 16 35 H 0.08 1.92 7.39 -51.93 -0.38 1.53 16 36 H 0.12 0.68 6.77 -51.92 -0.35 0.32 16 37 H 0.12 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.12 0.75 8.14 -51.92 -0.42 0.32 16 LS Contribution 314.76 15.07 4.74 4.74 Total: -1.00 -33.73 314.76 -8.19 -41.92 By element: Atomic # 1 Polarization: 14.44 SS G_CDS: -5.20 Total: 9.24 kcal Atomic # 6 Polarization: -19.49 SS G_CDS: 0.62 Total: -18.86 kcal Atomic # 7 Polarization: -34.93 SS G_CDS: -0.34 Total: -35.27 kcal Atomic # 8 Polarization: -47.15 SS G_CDS: -2.50 Total: -49.65 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 16 Polarization: 31.93 SS G_CDS: -0.50 Total: 31.42 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -33.73 -8.19 -41.92 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349108739.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.438 kcal (2) G-P(sol) polarization free energy of solvation -33.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds