Wall clock time and date at job start Mon Mar 30 2020 01:40:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.46967 * 2 1 4 4 C 1.52995 * 109.47570 * 239.99821 * 2 1 3 5 5 N 1.46897 * 109.47492 * 179.97438 * 4 2 1 6 6 C 1.48538 * 111.00123 * 287.39971 * 5 4 2 7 7 C 1.54933 * 103.22579 * 200.28130 * 6 5 4 8 8 C 1.54593 * 102.92591 * 37.41127 * 7 6 5 9 9 O 1.42904 * 110.31066 * 96.95983 * 8 7 6 10 10 C 1.50700 * 110.31084 * 219.12964 * 8 7 6 11 11 H 1.08000 * 120.00330 * 115.71577 * 10 8 7 12 12 C 1.37886 * 119.99791 * 295.71403 * 10 8 7 13 13 N 1.31511 * 120.00026 * 0.02562 * 12 10 8 14 14 Si 1.86799 * 119.99683 * 179.97438 * 12 10 8 15 15 H 1.48500 * 109.47361 * 359.97438 * 14 12 10 16 16 H 1.48501 * 109.47009 * 120.00547 * 14 12 10 17 17 H 1.48509 * 109.46917 * 239.99845 * 14 12 10 18 18 C 1.47899 * 111.00068 * 170.00129 * 5 4 2 19 19 S 1.81407 * 109.47374 * 119.99621 * 2 1 3 20 20 C 1.81397 * 101.92142 * 305.00420 * 19 2 1 21 21 O 1.42099 * 108.57255 * 59.49057 * 19 2 1 22 22 O 1.42096 * 108.58195 * 190.51443 * 19 2 1 23 23 H 1.08998 * 109.46929 * 299.99646 * 1 2 3 24 24 H 1.08998 * 109.47268 * 60.00473 * 1 2 3 25 25 H 1.09003 * 109.46627 * 180.02562 * 1 2 3 26 26 H 1.09008 * 109.46983 * 59.99503 * 4 2 1 27 27 H 1.09000 * 109.47121 * 300.00084 * 4 2 1 28 28 H 1.09007 * 110.66246 * 318.71191 * 6 5 4 29 29 H 1.08993 * 110.66698 * 81.83885 * 6 5 4 30 30 H 1.09007 * 110.72333 * 279.05054 * 7 6 5 31 31 H 1.09004 * 110.72411 * 155.77248 * 7 6 5 32 32 H 0.96700 * 113.99325 * 64.28344 * 9 8 7 33 33 H 0.96995 * 119.99911 * 180.02562 * 13 12 10 34 34 H 1.09004 * 109.91646 * 26.49394 * 18 5 4 35 35 H 1.08998 * 109.92144 * 265.19786 * 18 5 4 36 36 H 1.09001 * 109.47205 * 59.99774 * 20 19 2 37 37 H 1.08997 * 109.47322 * 179.97438 * 20 19 2 38 38 H 1.09000 * 109.47351 * 299.99613 * 20 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2491 5 7 3.5090 -0.7207 -1.2494 6 6 4.0408 0.6328 -1.5523 7 6 5.4886 0.3473 -2.0243 8 6 5.3381 -0.9651 -2.8274 9 8 5.2268 -0.6821 -4.2237 10 6 6.5119 -1.8741 -2.5688 11 1 6.3609 -2.8252 -2.0798 12 6 7.7786 -1.4917 -2.9565 13 7 7.9625 -0.3334 -3.5515 14 14 9.2336 -2.6182 -2.6353 15 1 8.7637 -3.8523 -1.9561 16 1 9.8764 -2.9765 -3.9251 17 1 10.2177 -1.9209 -1.7688 18 6 4.0392 -1.6082 -2.3071 19 16 2.1347 -0.8550 1.4812 20 6 1.2998 0.0577 2.8079 21 8 1.6409 -2.1874 1.4680 22 8 3.5342 -0.6349 1.5915 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.6767 -0.2075 -2.1392 27 1 1.6768 -1.7489 -1.2491 28 1 3.4629 1.1041 -2.3473 29 1 4.0435 1.2542 -0.6569 30 1 6.1513 0.2034 -1.1708 31 1 5.8514 1.1517 -2.6643 32 1 6.0161 -0.2756 -4.6067 33 1 8.8536 -0.0645 -3.8246 34 1 3.3159 -1.6925 -3.1182 35 1 4.2528 -2.5934 -1.8927 36 1 0.2202 -0.0209 2.6795 37 1 1.5822 -0.3639 3.7726 38 1 1.5949 1.1063 2.7691 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001349108739.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:08 Heat of formation + Delta-G solvation = -141.246677 kcal Electronic energy + Delta-G solvation = -21063.358387 eV Core-core repulsion = 17839.225986 eV Total energy + Delta-G solvation = -3224.132400 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.24879 -37.81551 -37.26143 -36.74703 -34.81153 -34.13691 -31.38259 -30.04375 -29.82320 -27.21921 -25.52333 -23.48358 -21.96324 -21.28697 -19.46639 -19.13451 -17.87143 -17.24883 -17.00372 -16.89801 -16.36547 -16.11885 -15.83356 -15.28452 -14.73125 -14.39762 -14.00066 -13.97086 -13.86447 -13.75723 -13.40637 -13.16951 -13.05972 -12.92950 -12.83768 -12.78817 -12.68210 -12.44448 -12.29791 -12.06290 -12.00930 -11.89141 -11.70341 -11.08804 -10.98260 -10.61927 -10.11121 -9.40889 -8.23141 -6.35679 -0.77702 1.37715 1.40276 1.52243 2.04957 2.38821 2.85180 2.95036 3.05074 3.29356 3.63095 3.81418 3.94158 4.11780 4.16461 4.24998 4.30810 4.35414 4.49811 4.50857 4.55036 4.69012 4.76215 4.81275 4.92608 5.00893 5.07424 5.23899 5.29489 5.40859 5.60780 5.75040 5.94290 6.07381 6.16658 6.67702 7.33816 7.43812 8.83430 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.027962 B = 0.005376 C = 0.004945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.126571 B = 5207.344872 C = 5660.942724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.553 4.553 3 H 0.156 0.844 4 C 0.048 3.952 5 N -0.532 5.532 6 C 0.042 3.958 7 C -0.113 4.113 8 C 0.227 3.773 9 O -0.599 6.599 10 C -0.556 4.556 11 H 0.048 0.952 12 C 0.028 3.972 13 N -0.914 5.914 14 Si 0.959 3.041 15 H -0.276 1.276 16 H -0.274 1.274 17 H -0.277 1.277 18 C 0.060 3.940 19 S 2.408 3.592 20 C -0.643 4.643 21 O -0.990 6.990 22 O -0.969 6.969 23 H 0.106 0.894 24 H 0.089 0.911 25 H 0.072 0.928 26 H 0.069 0.931 27 H 0.083 0.917 28 H 0.051 0.949 29 H 0.091 0.909 30 H 0.042 0.958 31 H 0.053 0.947 32 H 0.379 0.621 33 H 0.270 0.730 34 H 0.045 0.955 35 H 0.065 0.935 36 H 0.159 0.841 37 H 0.135 0.865 38 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.695 6.206 9.692 20.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.664 4.664 3 H 0.173 0.827 4 C -0.081 4.081 5 N -0.256 5.256 6 C -0.085 4.085 7 C -0.152 4.152 8 C 0.188 3.812 9 O -0.409 6.409 10 C -0.594 4.594 11 H 0.066 0.934 12 C -0.172 4.172 13 N -0.554 5.554 14 Si 0.784 3.216 15 H -0.200 1.200 16 H -0.199 1.199 17 H -0.203 1.203 18 C -0.068 4.068 19 S 2.594 3.406 20 C -0.795 4.795 21 O -0.987 6.987 22 O -0.967 6.967 23 H 0.125 0.875 24 H 0.108 0.892 25 H 0.091 0.909 26 H 0.088 0.912 27 H 0.102 0.898 28 H 0.069 0.931 29 H 0.110 0.890 30 H 0.061 0.939 31 H 0.072 0.928 32 H 0.229 0.771 33 H 0.079 0.921 34 H 0.064 0.936 35 H 0.083 0.917 36 H 0.177 0.823 37 H 0.153 0.847 38 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -16.399 5.135 10.272 20.020 hybrid contribution 1.115 0.408 -1.024 1.568 sum -15.283 5.543 9.248 18.704 Atomic orbital electron populations 1.21849 0.87440 1.04680 1.06518 1.29974 1.07918 1.13602 1.14878 0.82658 1.22213 0.87786 1.01246 0.96821 1.64818 1.07355 1.08149 1.45319 1.23272 0.95329 0.90198 0.99671 1.22759 0.94887 0.98506 0.99007 1.19559 0.91499 0.91442 0.78738 1.86057 1.44217 1.84761 1.25844 1.21985 0.93477 1.04603 1.39330 0.93360 1.25669 1.01066 0.96456 0.93972 1.69685 1.23684 1.21050 1.41000 0.85503 0.79050 0.79006 0.78023 1.20046 1.19926 1.20267 1.22657 0.95721 0.96600 0.91777 1.08048 0.75843 0.76990 0.79707 1.30209 1.16023 1.16157 1.17119 1.93485 1.82598 1.35536 1.87087 1.93577 1.30562 1.86621 1.85892 0.87506 0.89193 0.90909 0.91243 0.89843 0.93055 0.89032 0.93916 0.92783 0.77085 0.92061 0.93644 0.91664 0.82304 0.84671 0.82754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 8.90 71.98 0.64 -1.03 16 2 C -0.55 -10.93 2.81 30.59 0.09 -10.85 16 3 H 0.16 2.40 7.37 -2.39 -0.02 2.38 16 4 C 0.05 1.40 4.14 86.30 0.36 1.76 16 5 N -0.53 -21.03 4.10 -883.02 -3.62 -24.65 16 6 C 0.04 1.64 5.91 86.65 0.51 2.15 16 7 C -0.11 -5.53 5.49 31.80 0.17 -5.36 16 8 C 0.23 12.02 0.99 -10.66 -0.01 12.01 16 9 O -0.60 -32.41 12.93 -148.98 -1.93 -34.34 16 10 C -0.56 -32.20 8.10 25.60 0.21 -32.00 16 11 H 0.05 2.86 7.34 -2.91 -0.02 2.84 16 12 C 0.03 1.57 5.26 84.66 0.45 2.02 16 13 N -0.91 -50.74 10.88 21.45 0.23 -50.51 16 14 Si 0.96 44.83 29.54 68.60 2.03 46.86 16 15 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 16 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 17 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 18 C 0.06 2.80 6.13 86.45 0.53 3.33 16 19 S 2.41 60.08 4.69 -56.49 -0.27 59.82 16 20 C -0.64 -7.04 10.01 113.37 1.14 -5.90 16 21 O -0.99 -32.09 18.06 -127.37 -2.30 -34.39 16 22 O -0.97 -35.27 17.26 -127.37 -2.20 -37.46 16 23 H 0.11 0.41 6.39 -2.39 -0.02 0.39 16 24 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 25 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 26 H 0.07 1.83 7.83 -2.38 -0.02 1.81 16 27 H 0.08 2.45 8.08 -2.39 -0.02 2.43 16 28 H 0.05 1.81 7.81 -2.38 -0.02 1.79 16 29 H 0.09 3.08 7.80 -2.39 -0.02 3.06 16 30 H 0.04 2.30 7.86 -2.38 -0.02 2.28 16 31 H 0.05 2.70 8.05 -2.38 -0.02 2.68 16 32 H 0.38 20.90 7.05 -74.06 -0.52 20.38 16 33 H 0.27 14.14 8.31 -92.71 -0.77 13.37 16 34 H 0.05 2.00 7.59 -2.39 -0.02 1.98 16 35 H 0.06 3.20 7.39 -2.39 -0.02 3.18 16 36 H 0.16 0.72 6.77 -2.39 -0.02 0.70 16 37 H 0.13 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.15 0.93 8.14 -2.39 -0.02 0.91 16 Total: -1.00 -77.59 314.76 -3.44 -81.03 By element: Atomic # 1 Polarization: 26.99 SS G_CDS: 0.53 Total: 27.52 kcal Atomic # 6 Polarization: -37.95 SS G_CDS: 4.08 Total: -33.87 kcal Atomic # 7 Polarization: -71.77 SS G_CDS: -3.38 Total: -75.16 kcal Atomic # 8 Polarization: -99.77 SS G_CDS: -6.42 Total: -106.20 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.86 kcal Atomic # 16 Polarization: 60.08 SS G_CDS: -0.27 Total: 59.82 kcal Total: -77.59 -3.44 -81.03 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349108739.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.216 kcal (2) G-P(sol) polarization free energy of solvation -77.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds