Wall clock time and date at job start Mon Mar 30 2020 01:59:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.28717 * 125.32067 * 2 1 4 4 N 1.28987 * 108.99172 * 179.97438 * 3 2 1 5 5 C 1.34194 * 107.24974 * 0.02562 * 4 3 2 6 6 C 1.47976 * 126.69588 * 179.97438 * 5 4 3 7 7 O 1.21560 * 119.99548 * 180.02562 * 6 5 4 8 8 N 1.34774 * 120.00543 * 0.02562 * 6 5 4 9 9 C 1.40072 * 120.00284 * 179.97438 * 8 6 5 10 10 C 1.40425 * 125.97888 * 359.97438 * 9 8 6 11 11 C 1.35239 * 107.86772 * 179.73666 * 10 9 8 12 12 N 1.34962 * 107.86411 * 0.42152 * 11 10 9 13 13 C 1.46500 * 125.97410 * 179.83729 * 12 11 10 14 14 C 1.50706 * 109.47299 * 124.71196 * 13 12 11 15 15 H 1.07998 * 119.99503 * 0.02562 * 14 13 12 16 16 C 1.37871 * 120.00434 * 180.02562 * 14 13 12 17 17 N 1.31516 * 119.99826 * 359.72891 * 16 14 13 18 18 Si 1.86800 * 120.00406 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.46758 * 269.72576 * 18 16 14 20 20 H 1.48499 * 109.47026 * 29.72423 * 18 16 14 21 21 H 1.48496 * 109.47474 * 149.72459 * 18 16 14 22 22 N 1.31239 * 125.97697 * 179.97438 * 9 8 6 23 23 N 1.28877 * 125.31475 * 180.29363 * 2 1 3 24 24 H 1.09007 * 109.47189 * 89.97464 * 1 2 3 25 25 H 1.08998 * 109.47081 * 209.96811 * 1 2 3 26 26 H 1.08999 * 109.47231 * 329.97420 * 1 2 3 27 27 H 0.96998 * 119.99189 * 0.02562 * 8 6 5 28 28 H 1.07998 * 126.06464 * 359.97438 * 10 9 8 29 29 H 1.07999 * 126.06199 * 180.25642 * 11 10 9 30 30 H 1.09004 * 109.47078 * 4.71958 * 13 12 11 31 31 H 1.08993 * 109.47364 * 244.71729 * 13 12 11 32 32 H 0.97000 * 120.00236 * 0.27947 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2092 1.0502 0.0000 4 7 3.4470 0.6876 0.0005 5 6 3.4686 -0.6542 0.0003 6 6 4.6691 -1.5192 0.0002 7 8 4.5467 -2.7287 -0.0004 8 7 5.8982 -0.9664 0.0009 9 6 7.0346 -1.7853 0.0014 10 6 7.0396 -3.1895 0.0017 11 6 8.3282 -3.5999 -0.0038 12 7 9.1125 -2.5016 0.0019 13 6 10.5775 -2.4903 0.0022 14 6 11.0738 -1.6714 -1.1615 15 1 10.3685 -1.2057 -1.8338 16 6 12.4282 -1.5169 -1.3679 17 7 13.2870 -2.0797 -0.5462 18 14 13.0434 -0.5012 -2.8100 19 1 13.2210 -1.3797 -3.9940 20 1 12.0543 0.5606 -3.1253 21 1 14.3438 0.1228 -2.4570 22 7 8.2811 -1.3744 0.0015 23 7 2.2100 -1.0516 -0.0054 24 1 -0.3634 0.0005 -1.0277 25 1 -0.3633 -0.8903 0.5133 26 1 -0.3633 0.8897 0.5142 27 1 5.9958 -0.0013 0.0018 28 1 6.1688 -3.8284 0.0021 29 1 8.6690 -4.6247 -0.0089 30 1 10.9487 -3.5113 -0.0875 31 1 10.9373 -2.0534 0.9337 32 1 12.9677 -2.6069 0.2028 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001360627568.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:55 Heat of formation + Delta-G solvation = 187.155158 kcal Electronic energy + Delta-G solvation = -20000.029543 eV Core-core repulsion = 16615.738922 eV Total energy + Delta-G solvation = -3384.290621 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.103 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -44.77168 -40.84318 -39.34665 -35.65609 -35.02005 -33.70534 -33.53354 -31.04572 -29.50399 -29.25724 -26.67813 -25.44945 -23.57565 -23.00912 -21.96897 -20.69652 -19.90232 -18.42120 -17.99260 -17.21681 -17.20656 -16.50644 -15.55651 -15.35336 -14.68210 -14.43456 -14.20095 -13.87615 -13.78444 -13.77298 -13.24152 -12.55771 -12.48914 -12.31828 -11.88637 -11.51317 -11.47599 -11.17801 -10.85347 -10.75682 -10.58761 -10.37151 -10.16446 -9.90018 -9.02310 -8.57852 -8.28741 -7.61597 -6.58325 -4.32469 0.61200 1.08785 1.33316 2.35910 2.48813 2.88160 3.36134 3.38069 3.42505 3.59298 3.59843 3.67831 3.96053 4.32496 4.41257 4.48065 4.63525 4.85060 5.15394 5.20904 5.38231 5.56147 5.64252 6.02273 6.31541 6.39659 6.53661 6.72676 7.16553 7.32739 7.64173 7.77719 7.78673 7.93466 8.33963 8.46714 8.60874 9.35707 10.79546 Molecular weight = 277.10amu Principal moments of inertia in cm(-1) A = 0.033849 B = 0.003267 C = 0.003051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.003767 B = 8568.649190 C = 9175.187767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.135 5.135 3 N -0.053 5.053 4 N -0.250 5.250 5 C 0.137 3.863 6 C 0.624 3.376 7 O -0.484 6.484 8 N -0.605 5.605 9 C 0.257 3.743 10 C -0.284 4.284 11 C 0.054 3.946 12 N -0.314 5.314 13 C 0.248 3.752 14 C -0.609 4.609 15 H 0.065 0.935 16 C 0.023 3.977 17 N -0.905 5.905 18 Si 1.079 2.921 19 H -0.286 1.286 20 H -0.286 1.286 21 H -0.282 1.282 22 N -0.291 5.291 23 N -0.243 5.243 24 H 0.107 0.893 25 H 0.115 0.885 26 H 0.117 0.883 27 H 0.422 0.578 28 H 0.163 0.837 29 H 0.171 0.829 30 H 0.048 0.952 31 H 0.036 0.964 32 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.561 2.439 1.824 24.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.048 5.048 3 N -0.047 5.047 4 N -0.125 5.125 5 C -0.147 4.147 6 C 0.403 3.597 7 O -0.352 6.352 8 N -0.253 5.253 9 C 0.005 3.995 10 C -0.315 4.315 11 C -0.096 4.096 12 N -0.095 5.095 13 C 0.130 3.870 14 C -0.647 4.647 15 H 0.083 0.917 16 C -0.181 4.181 17 N -0.541 5.541 18 Si 0.906 3.094 19 H -0.212 1.212 20 H -0.212 1.212 21 H -0.207 1.207 22 N -0.122 5.122 23 N -0.097 5.097 24 H 0.125 0.875 25 H 0.134 0.866 26 H 0.135 0.865 27 H 0.260 0.740 28 H 0.180 0.820 29 H 0.188 0.812 30 H 0.065 0.935 31 H 0.054 0.946 32 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -22.754 3.625 1.083 23.067 hybrid contribution -1.769 -1.133 0.752 2.231 sum -24.523 2.492 1.835 24.718 Atomic orbital electron populations 1.22585 0.68272 1.07347 1.06567 1.50286 1.11217 1.00625 1.42637 1.78954 0.96268 1.13940 1.15510 1.76194 1.10169 1.09981 1.16157 1.24990 0.92901 0.90137 1.06694 1.15794 0.80008 0.85679 0.78198 1.90808 1.84900 1.12463 1.47053 1.41868 1.01935 1.10616 1.70907 1.18914 0.86258 0.90076 1.04302 1.21533 0.97498 0.92717 1.19749 1.22573 0.90771 0.93978 1.02264 1.48857 1.07671 1.01406 1.51608 1.19810 0.68797 0.98979 0.99409 1.22135 0.94908 1.35250 1.12388 0.91703 1.25924 0.92603 0.97500 1.02115 1.70825 1.37147 1.31091 1.15002 0.83387 0.75828 0.75865 0.74313 1.21219 1.21163 1.20712 1.77413 0.97798 1.09856 1.27148 1.75097 1.02199 1.14244 1.18188 0.87504 0.86638 0.86458 0.74047 0.81998 0.81212 0.93467 0.94589 0.92238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.21 11.62 59.85 0.70 0.91 16 2 N -0.13 -1.21 4.39 -16.65 -0.07 -1.29 16 3 N -0.05 -0.59 13.23 60.35 0.80 0.21 16 4 N -0.25 -3.31 12.26 32.09 0.39 -2.91 16 5 C 0.14 1.90 8.14 -156.24 -1.27 0.63 16 6 C 0.62 9.97 7.80 -12.27 -0.10 9.87 16 7 O -0.48 -8.70 14.22 5.31 0.08 -8.63 16 8 N -0.61 -10.06 5.44 -11.95 -0.07 -10.12 16 9 C 0.26 5.20 8.11 -154.45 -1.25 3.95 16 10 C -0.28 -5.52 9.60 -39.83 -0.38 -5.91 16 11 C 0.05 1.05 11.43 -17.24 -0.20 0.86 16 12 N -0.31 -7.26 3.67 -62.56 -0.23 -7.48 16 13 C 0.25 6.22 5.57 -5.19 -0.03 6.19 16 14 C -0.61 -17.05 9.24 -34.44 -0.32 -17.37 16 15 H 0.06 1.90 7.81 -52.49 -0.41 1.49 16 16 C 0.02 0.65 5.46 -17.82 -0.10 0.55 16 17 N -0.91 -26.29 13.65 55.43 0.76 -25.53 16 18 Si 1.08 25.01 29.90 -169.99 -5.08 19.92 16 19 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 20 H -0.29 -6.46 7.11 56.52 0.40 -6.05 16 21 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 22 N -0.29 -6.75 12.42 31.43 0.39 -6.36 16 23 N -0.24 -2.98 12.17 32.11 0.39 -2.59 16 24 H 0.11 0.05 8.14 -51.93 -0.42 -0.37 16 25 H 0.12 0.10 8.14 -51.93 -0.42 -0.33 16 26 H 0.12 0.00 8.14 -51.93 -0.42 -0.42 16 27 H 0.42 6.21 8.57 -40.82 -0.35 5.86 16 28 H 0.16 3.00 5.91 -52.49 -0.31 2.69 16 29 H 0.17 2.66 8.06 -52.49 -0.42 2.24 16 30 H 0.05 1.14 7.94 -51.93 -0.41 0.72 16 31 H 0.04 0.94 8.00 -51.93 -0.42 0.52 16 32 H 0.27 7.57 7.22 -40.82 -0.29 7.28 16 LS Contribution 297.60 15.07 4.48 4.48 Total: -1.00 -35.17 297.60 -3.79 -38.96 By element: Atomic # 1 Polarization: 4.33 SS G_CDS: -2.68 Total: 1.65 kcal Atomic # 6 Polarization: 2.63 SS G_CDS: -2.95 Total: -0.32 kcal Atomic # 7 Polarization: -58.43 SS G_CDS: 2.36 Total: -56.07 kcal Atomic # 8 Polarization: -8.70 SS G_CDS: 0.08 Total: -8.63 kcal Atomic # 14 Polarization: 25.01 SS G_CDS: -5.08 Total: 19.92 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -35.17 -3.79 -38.96 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001360627568.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 226.114 kcal (2) G-P(sol) polarization free energy of solvation -35.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 190.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.959 kcal (6) G-S(sol) free energy of system = (1) + (5) 187.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds